mRNA_L-elsbetiae_contig11990.1696.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11990.1696.1
Unique NamemRNA_L-elsbetiae_contig11990.1696.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11990.1696.1 vs. uniprot
Match: D7G392_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G392_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.110e-50
Identity = 94/118 (79.66%), Postives = 103/118 (87.29%), Query Frame = 1 
Query:    1 LLLPHFPELERNFTVEIIVGERLEHLRGSHLVLEADDLISEEVMRRVYGKAPERQVSEMLGVKQPTAQVAAMLLKYGVAAEQFCYARFLKLTSNPPLHPPLAAAALRAASESAKIAED 354
            LLLPHF +LER+FTVE +VGERLEHL+ SHL LEADDLI E+VM+ VYGK PERQVS MLGVKQPTA VAA+LLKYGVAAE FCYARFLKL+ NPP HP LAA AL A+SESAKIAED
Sbjct: 1274 LLLPHFSDLERHFTVEFLVGERLEHLKRSHLALEADDLIPEDVMQHVYGKEPERQVSRMLGVKQPTADVAAVLLKYGVAAEHFCYARFLKLSRNPPPHPALAAVALAASSESAKIAED 1391
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BLAST of mRNA_L-elsbetiae_contig11990.1696.1 vs. uniprot
Match: A0A6H5KX64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX64_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.210e-49
Identity = 86/108 (79.63%), Postives = 94/108 (87.04%), Query Frame = 1 
Query:   31 RNFTVEIIVGERLEHLRGSHLVLEADDLISEEVMRRVYGKAPERQVSEMLGVKQPTAQVAAMLLKYGVAAEQFCYARFLKLTSNPPLHPPLAAAALRAASESAKIAED 354
            R+FTVE +VGERLEHL+ SHL LEADDLI E+VM+ VYGK PERQVS MLGVKQPTA VAA+LLKYGVAAE FCYARFLKL+ NPP HP LAA AL A+SESAKIAED
Sbjct:    8 RHFTVEFLVGERLEHLKRSHLALEADDLIPEDVMQHVYGKEPERQVSRMLGVKQPTADVAAVLLKYGVAAEHFCYARFLKLSRNPPPHPALAAVALAASSESAKIAED 115
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BLAST of mRNA_L-elsbetiae_contig11990.1696.1 vs. uniprot
Match: A0A6H5K5F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.130e-21
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    1 LLLPHFPELERNFTVEIIVGERLEHLRGSHLVLEADDLISEEVMRRVYGKAPERQVSEMLGVKQPTAQVAAMLLKYGVAAEQFCYARFLKLTSN 282
            LLLPHF EL+++FTV  +VG+ L  L+ SHL L+A DLI +++M  VYGK  ERQ+S +LGVK+PT ++  +L  +GV    FC+ARFL+LT +
Sbjct:  606 LLLPHFSELDKHFTVAFLVGQGLNDLKKSHLALQAGDLIPDDIMMGVYGKNKERQLS-ILGVKEPTQEMVKVLRNHGVEPWNFCHARFLRLTKS 698
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11990.1696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G392_ECTSI1.110e-5079.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX64_9PHAE1.210e-4979.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5F0_9PHAE3.130e-2152.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11990contigL-elsbetiae_contig11990:1157..3810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size450
Cds size450
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11990.1696.1prot_L-elsbetiae_contig11990.1696.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11990 1157..3810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815398.4836047-CDS-L-elsbetiae_contig11990:1156..13281622815398.4836047-CDS-L-elsbetiae_contig11990:1156..1328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11990 1157..1328 -
1691682879.0580087-CDS-L-elsbetiae_contig11990:1156..13281691682879.0580087-CDS-L-elsbetiae_contig11990:1156..1328Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11990 1157..1328 -
1622815398.5017388-CDS-L-elsbetiae_contig11990:1770..18831622815398.5017388-CDS-L-elsbetiae_contig11990:1770..1883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11990 1771..1883 -
1691682879.0699217-CDS-L-elsbetiae_contig11990:1770..18831691682879.0699217-CDS-L-elsbetiae_contig11990:1770..1883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11990 1771..1883 -
1622815398.5144448-CDS-L-elsbetiae_contig11990:2136..22691622815398.5144448-CDS-L-elsbetiae_contig11990:2136..2269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11990 2137..2269 -
1691682879.0777361-CDS-L-elsbetiae_contig11990:2136..22691691682879.0777361-CDS-L-elsbetiae_contig11990:2136..2269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11990 2137..2269 -
1622815398.526561-CDS-L-elsbetiae_contig11990:3778..38101622815398.526561-CDS-L-elsbetiae_contig11990:3778..3810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11990 3779..3810 -
1691682879.0856042-CDS-L-elsbetiae_contig11990:3778..38101691682879.0856042-CDS-L-elsbetiae_contig11990:3778..3810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11990 3779..3810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11990.1696.1

>prot_L-elsbetiae_contig11990.1696.1 ID=prot_L-elsbetiae_contig11990.1696.1|Name=mRNA_L-elsbetiae_contig11990.1696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
LLLPHFPELERNFTVEIIVGERLEHLRGSHLVLEADDLISEEVMRRVYGK
APERQVSEMLGVKQPTAQVAAMLLKYGVAAEQFCYARFLKLTSNPPLHPP
LAAAALRAASESAKIAEDTAKAANESARVAAGSGRAATEAGVPSKRRPQ*
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mRNA from alignment at L-elsbetiae_contig11990:1157..3810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11990.1696.1 ID=mRNA_L-elsbetiae_contig11990.1696.1|Name=mRNA_L-elsbetiae_contig11990.1696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2654bp|location=Sequence derived from alignment at L-elsbetiae_contig11990:1157..3810- (Laminarionema elsbetiae ELsaHSoW15)
CTCCTCTTGCCGCACTTTCCGGAGCTGGAACGGTGAGAGGCTGTCGTATT
TTGTGTGCCTGTTAACTTGCTTGTTTTTCTCCTACTACTGTGTGTTGCCT
TGCGGATGGGTTAATTACAACCCCGCGAGAGGCTGTCTATATGTGTCCAC
ATTGTTTATCTTTATTGTTTTGTTTCTTTCGAATTTGGATTTTTTTCCGA
GACTCCTGAGGGAAGAGGAAAATATCAGCGTGGCAGAGCCACGTTCCCGC
AGATACATATCTGCGCCAACTGGATCGTGTCTCTCCCTCTCTGCTCAAAC
AATACCTCTTCCCTCCGTAACAACAACCGAGGATTCTACATCCTCAGGTG
AAGGGAACTAGTCTTACTGCAAGCAGTAGGCTCGGATGACCAAGTCCCCA
AATGGTATCCTACCATTTCCTACGCCAAACTAGAACAGCGTCTCTAGCTA
CTGATACCGGATCTTCTCCTCTCCCCCACCTTCGAAAGAAAAAGGTGGGT
GGGCGGGGAAAAGACTCGACATGTTGGCCGCTGCTGAAGCTGACCACCTC
CTGGAAGCTCTTTTCCGTGTCCACCTTGCTCCATTCCTCTGCGCTTCCTG
GAGCGCTAAAACTCTCGAGGTGAACAGACAAACAGGTGGCTTCCACAAAG
TGAGCCACCTTCTACTCAAATACTAGGGGCCCTGTGCCGCGTAATACAAC
TCACCCCGAGTACCCCAAAACATCGGTGAACGCCTTCGGAACTAATCTAA
ACAAACTTTACGGTTTCATTCAGTAAATATCTGTTTGTTCCACCGCTGCA
CGGCTTCAGCAAACCTGCCCTTTGTTTAGAAGTGTGAAGATGGTCACACA
TATGCTACTATGTTTTGTACAACCTTTTTTTTTTTCCTCTTTCACATTTA
TTTCCAGTGCTCGATGGGTTCCTTGCCGCAAGGGCATCTTGCCAGAGTAC
TGAAACGTGGTCACACAGAAGGATTCCTTTCCCCGAGGCCCCCACTTCCC
CCGTCTGCGGTGCTTGCCTAAGATTTTTTTCGCAAGAAGGGTTCAGCAGT
CCCTTTCCCTCGTCGCGGTGAGGTCGAAGTAGCTCGGTCTTGAAAGTTGT
CAAGTGTTACGTGATATCGGCGCTTCGCGCCTGTACTCGAAAGGGCTCAA
GAGTAGACCGGCGTTCGTTCACAAAATGTCGGCTAAAAAACACATGTGTA
TGAAGCAGGAACAACGGAAGAATGGGGTATCTTTACCATATGTATGCAGA
TATCATGGAGCTCCTCGCGAACATTTTTCCTCGGGGTGTGTGCCCGGGGT
GCGTGGCGACGTGCGCCTTGTACGGTAGCGTCCGTAGAGCTTGTTGCGCG
TTCGGACATCGGTTTCTCTGTGTTCTATTTTCGTGTTTTGTTTTGTTTTT
TTCTTACGGATACCCACACGTATACCAGCGCTCGGACTAATTTTTGAAAT
AATGAAAAAGAGCGCGTGGGGATCGTGCCGAGCAAAAAAGGCGTTTCCCG
TATCTCGGATGTACTCTTCTCTTTTGAAACAACAAACGAAGGAATTTTAC
GGTGGAGATTATCGTGGGCGAGAGATTGGAGCACCTCAGGGGCAGCCACT
TGGTCCTAGAGGCCGACGACCTCATTTCCGAGGAGGTCATGCGGCGGGTG
TATGGCAAGGCCCCGGAGCGCCAGGTCAGTACGGGCTGGTGGATCTGTTG
TTTGATATGGTTCCTTCCATATCTGGATTGCAAACCAGACTTATCACGGT
GTTTATAGGCTGTGGTGTCAGCACTAGTTCTGCATCTACCAGTGATTATA
TTTGTGTAAGTGTGTGTGTGTTTGTGTGTGTGATATTGCGAGACGGCAGG
GCAGTCTTGTCCACACGGTTGAAAAACATCAGGGTTTTGACAGGGGGATT
TTTTGCAACATGCTCTGCCGTACACAGGTTTCCGAGATGCTCGGCGTCAA
GCAGCCCACGGCCCAGGTCGCGGCGATGCTGCTAAAATACGGAGTGGCCG
CCGAACAGTTCTGCTATGCTCGGTTCCTGAAGCTCACGAGGTGTGTGCGC
GCGTGCACGCATGCGCGGGCGAGACGGTGGTGCGACGGTTCTTGCGTTTG
CGGGTGAATATCGGCATTGCGACAGCTCGTTGGCGGGGGGTGCGACAGGG
TCGGGGGAGAAATCCCTGTAGTGACCCCGCAATTTGCAGTCGCCGAGTAC
TTGCAATCGCCCCGTGCCGTGTACATGCGCGCGAGAAGCGCCTTCGCAGT
AGCTAGCGTGTTTATCCCAGAACCCGAGCTATTGTGATGGAGCGCCCCGC
CCACAGACGCAGCGTTCCATCATTTCCGACGCAAAACTCCGGAAATAGTA
GTTGAACATGACGCGTGACGGCAGGTGTCTCTCACCTCCGCTCTGTTCTC
TACTCACCCGCTGCACAACGCGCCTACTTCCTGCTTGGTTGCTTCGAACC
GCGGTGTTGGCAATTTACCCCGCCCTCCCCAGCAACCCTCCTCTCCATCC
GCCGCTTGCGGCAGCTGCCCTGAGGGCCGCGTCCGAGTCGGCCAAGATCG
CAGAGGACACGGCAAAAGCCGCGAACGAGTCGGCGCGGGTGGCCGCAGGG
TCTGGAAGGGCTGCGACAGAGGCGGGGGTGCCGTCCAAGCGCCGACCACA
GTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11990:1157..3810-

>mRNA_L-elsbetiae_contig11990.1696.1 ID=mRNA_L-elsbetiae_contig11990.1696.1|Name=mRNA_L-elsbetiae_contig11990.1696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig11990:1157..3810- (Laminarionema elsbetiae ELsaHSoW15)
CTCCTCTTGCCGCACTTTCCGGAGCTGGAACGCTCCTCTTGCCGCACTTT
CCGGAGCTGGAACGGAATTTTACGGTGGAGATTATCGTGGGCGAGAGATT
GGAGCACCTCAGGGGCAGCCACTTGGTCCTAGAGGCCGACGACCTCATTT
CCGAGGAGGTCATGCGGCGGGTGTATGGCAAGGCCCCGGAGCGCCAGGAA
TTTTACGGTGGAGATTATCGTGGGCGAGAGATTGGAGCACCTCAGGGGCA
GCCACTTGGTCCTAGAGGCCGACGACCTCATTTCCGAGGAGGTCATGCGG
CGGGTGTATGGCAAGGCCCCGGAGCGCCAGGTTTCCGAGATGCTCGGCGT
CAAGCAGCCCACGGCCCAGGTCGCGGCGATGCTGCTAAAATACGGAGTGG
CCGCCGAACAGTTCTGCTATGCTCGGTTCCTGAAGCTCACGAGGTTTCCG
AGATGCTCGGCGTCAAGCAGCCCACGGCCCAGGTCGCGGCGATGCTGCTA
AAATACGGAGTGGCCGCCGAACAGTTCTGCTATGCTCGGTTCCTGAAGCT
CACGAGCAACCCTCCTCTCCATCCGCCGCTTGCGGCAGCTGCCCTGAGGG
CCGCGTCCGAGTCGGCCAAGATCGCAGAGGACACGGCAAAAGCCGCGAAC
GAGTCGGCGCGGGTGGCCGCAGGGTCTGGAAGGGCTGCGACAGAGGCGGG
GGTGCCGTCCAAGCGCCGACCACAGTAGCAACCCTCCTCTCCATCCGCCG
CTTGCGGCAGCTGCCCTGAGGGCCGCGTCCGAGTCGGCCAAGATCGCAGA
GGACACGGCAAAAGCCGCGAACGAGTCGGCGCGGGTGGCCGCAGGGTCTG
GAAGGGCTGCGACAGAGGCGGGGGTGCCGTCCAAGCGCCGACCACAGTAG
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