mRNA_L-elsbetiae_contig1199.1695.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1199.1695.1 vs. uniprot
Match: D7FLH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH4_ECTSI) HSP 1 Score: 363 bits (933), Expect = 5.850e-100 Identity = 346/907 (38.15%), Postives = 409/907 (45.09%), Query Frame = 2 Query: 590 RLFRDIGWSFLVDSVRVRPLHEEMTASLLEEVEKRRGQKTSRGSTS-HGPADFASAVL-----------------AXXXXXXXXXXXXXXXXXXXXXXXXSTVGIASERPGAAXXXXXXXXXXXXXFGGKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAETAQTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAAPPRGVVQAGLQELSAATRSVSTIXXXXXXXXXXXXXXXXXXXXXXXXXXGKPS-LGISAAFSRQSVRSGETLGYYGREEIEVLSAISKNPSRIAAYNRITEGKAGNKEDRPSSEHVAVALPSPRRRRPRTTGAAMQTSASAPILRPGSGEAGA--------------------NAPPGPASSAASAASEWRVSTARNRRKGVDA-ERRLTAVVSDG-------------PPPSRTVKMYRNAAREYRKGCSAGQAMWKELQHEPSATRTGSHSTWSTRSRGSGSIGGGPAPVAADWSSNSTSTLLELPQIGNTPASAKVSWAARD----GPEDSG-DDSDDGAGLGQEWGAGGGGGSRSTALRSGRGNVGGVNSAANDWFAATRHGRDDAVPGGMQLSLGRGPGWEDTFAFKRSTARRAIQTSRLTAGKKGTRWVSSTASSPKKWDWDWSSRPVSALSACRVESLLSKFDAACAGGRDHSISMPKASGRKRASVAGPAGSAARPAAVGGTGPRTVVETAVAXXXXXXXXXXXXTTGEATREDATANPPPPAA-----GLAAKEREGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPPKEPVLNPDVSGDGGGEDHRLISVEVQKRNKEVVKLQQKIVALLVKGNDNARRR 3121 RLF+DIGWSFLVD+VRVRPLHEEMTA LL+EVE+RR QKTSR STS G + F VL + + VG+ S GAA R E A A P GV Q G L+ + SV+T GK S ++ AFS QSVRSG TLGYYGREE+ VLSAISKNPSRIA YNR+TE K GN S E +PSP RRRPRTT + M+ S+S L SGE+ + + PP A+ + A S V A D E L A++ G PPPSRTVKMYRNAAREY +G SAGQAMW +LQ + RTGS S G GG + D SS+STST +LPQIGNT AS KVSW ARD GPE S +DSDD E GGG GS S+ R GRG VGGV SAANDWFAATRHGRDDAVPGG +++L RGPGWEDT+AF+RSTARRAI+TSR+ +GKK +SS A+ P KW+WDW SRP+SAL A R+E L SKFD +S P R+ P +A G P XXXXXXXXXXXX E T + + +PP P A G AA G P ++ ++ + G G H L+ VEVQKR+KE+VKLQQKI+ALLVKGND+ARRR Sbjct: 722 RLFQDIGWSFLVDTVRVRPLHEEMTAGLLDEVERRRAQKTSRRSTSSRGGSSFYKTVLDATSAAPAAAPPSPSATSTPQTVTFGERTASSGPLVAGRAASAPVGVGSHPSGAAAT--------------SPARPGDCQENDRDALAAGRSERGAAGEAVAEPNPLAVTAPRRTEAAAAARRQAEAERRQVALATIEKHRSCHRAASACSPAAAQT--------------DTVPSSGVNQEGRVRLARDSNSVATTLTGRPVSSGDHLGAARAADRK-----GKLSRTTMTRAFSAQSVRSGATLGYYGREELNVLSAISKNPSRIAVYNRVTEAKQGNNGGENSPEIAVAPVPSPHRRRPRTTPSTMRLSSSTAALSL-SGESSSLTRSPSXXXXGKQQRSATVLSPPPSTAADDSRAESGEGVRPAAGLAYAGDGKETPLGAMIGPGVGFGLNVGVMSEQPPPSRTVKMYRNAAREYGRGASAGQAMWMDLQRDVPVARTGSRCRRDIHS-GRHVGGGTTSATVLDLSSSSTSTFQDLPQIGNTSASEKVSWGARDDSGTGPEGSDLEDSDDEVQAILEL-EGGGVGSGSSTARHGRGGVGGVASAANDWFAATRHGRDDAVPGGTRVALNRGPGWEDTYAFRRSTARRAIKTSRILSGKKMP-LLSSAATLPGKWNWDWCSRPLSALPADRIEYLQSKFD--------DDMSAPFGEARR------PTSAATISIGDGSAAPXXXXXXXXXXXXXXXXXXXXXXXXEKTDAEGSLSPPSPTALADNKGKAASTATG----------------VVDNSAATAHKARRGRSERVNEHGRDEKDCDREQLNTEPTRDGIIR---NASGSGRAH-LVPVEVQKRSKELVKLQQKIIALLVKGNDHARRR 1557
BLAST of mRNA_L-elsbetiae_contig1199.1695.1 vs. uniprot
Match: A0A6H5JHV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV9_9PHAE) HSP 1 Score: 295 bits (754), Expect = 2.410e-78 Identity = 268/701 (38.23%), Postives = 312/701 (44.51%), Query Frame = 2 Query: 575 TRRICRLFRDIGWSFLVDSVRVRPLHEEMTASLLEEVEKRRGQKTSRGSTS-HGPADFASAVLAXXXXXXXXXXXXXXXXXXXXXXXXSTVGIASERPGAAXXXXXXXXXXXXXFGGKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RAETAQTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAAPPRGVVQAGLQELSAATRSVSTIXXXXXXXXXXXXXXXXXXXXXXXXXXGKPSLGISAAFSRQSVRSGETLGYYGREEIEVLSAISKNPSRIAAYNRITEGKAGNKEDRPSSEHVAVA-LPSPRRRRPRTTGAAMQTSASAPILRPGSGEAGA-------------------NAPPGPASSAASAASEWRVSTARN-RRKGVDAERRLTA-------------VVSDGPPPSRTVKMYRNAAREYRKGCSAGQAMWKELQHEPSATRTGSHSTWSTRSRGS------GSIGGGPAPVAADWSSNSTSTLLELPQIGNTPASAK---VSWAARD----GPEDSG-DDSDDGAGLGQEWGAGGGGGSRSTALRSGRGNVGGVNSAANDWFAATRHGRDDAVPGGMQLSLGRGPGWEDTFAFKRSTARRAIQTSRLTAGKKGTRWVSSTASSPKKWDWDWSSRPVSALSACRVESLLSKFD 2521 T+ RLFR+IGWSFLVD+VRVRPLHEEMTA+LL+EVE+ R QKTSR STS G F VL +S P A G T R E A A S A GV Q G L+ + SV+T P+ ++ AFS QSVRSG TLGYYGREE++VLSAISKNPSRIA YNRITE K GN E+ P +AVA +PSPRRRRPRT + ++ S S L G ++ + PP A+ A S V A G + L A VVS+ PPPSRT KMYRNAAREY +G SAGQAMW E R R R I G P+ S + NTP VSW ARD GPE S DDSDD E GGG GS S+ R GRG V GV SAANDWFAATRHGRDDAVPGG +++L RGPGWEDT+AFKRSTARRAI++SR+ +GKK +SS A+ P KW+WDW SRP+SAL R+E LLSKFD Sbjct: 394 TQPRARLFRNIGWSFLVDTVRVRPLHEEMTAALLDEVERLRAQKTSRRSTSSRGGLSFYKTVLDATSAAPTAAHPSPSAISTPQSVTFGERMASSGPPVAGLAASTPASVGSHPSGAAATSPSRPGDCQENDRDALAAGRSKHGAAGEAVPEPNPLTVTAHRRTEAAVAAKRQEEAERRQAALATIEKHRSCHRAASARSPAAAQT--------------STAASSGVNQEGKDRLARGSNSVATTLTGRPVSSIDHLGAARAADRKGNL---SPTT-MTRAFSEQSVRSGATLGYYGREEVKVLSAISKNPSRIAVYNRITEEKQGNGENSPE---IAVAPVPSPRRRRPRTMPSTVRLSRSTAALSLGGEDSSLTQSTWSSSNGKRQRSSTVLSPPPSTAADNLRAESGEGVRPATGLAHAGGGEDTPLGAMIGPGVGLGLNVGVVSEQPPPSRTAKMYRNAAREYGRGASAGQAMWMFAVSEGHPPRPARRRRNEIRRRFRLVVKFYVHIAGPPSNWDHFGFRKSEDREVNRSTGRNTPIKKNAGVVSWGARDDAGTGPEGSDLDDSDDEVQAIHEL-EGGGVGSGSSTARHGRGGVEGVASAANDWFAATRHGRDDAVPGGTRVALSRGPGWEDTYAFKRSTARRAIKSSRIVSGKKNMPLLSSAATLPGKWNWDWCSRPLSALPVDRIEYLLSKFD 1072
BLAST of mRNA_L-elsbetiae_contig1199.1695.1 vs. uniprot
Match: A0A7S4DFJ3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFJ3_HETAK) HSP 1 Score: 92.4 bits (228), Expect = 1.830e-17 Identity = 48/149 (32.21%), Postives = 82/149 (55.03%), Query Frame = 2 Query: 3188 GQLGPHYTFQSVMDFRAAFNFVDEDMSGCLDSEEWRRFLDRFKSTVAVVNMXXXXXXXXXXXXXSVEVGELVPVIFNKASSPQHHLIRHLIEYENTMDVKRFNNKNLPAAPAT-LQPDDAKRFFELHDSSNSGRLDQKTVKRMLLGLRV 3631 G LGPHY+ + V +FR AFN+VDEDMSG L+ EW FL RF ++ + ++++ EL+P+IFNKA+ Q ++ L+++ N+ K N + P L +D +R + +D+ +G + +T+K + L++ Sbjct: 9 GFLGPHYSMERVKEFREAFNYVDEDMSGRLEYAEWEIFLRRFDPKISQDMVRRNFLLIDKDYSGAIDIDELMPIIFNKATPEQCTIMLRLVQHANS---KTMNQSSRPPPDIDILTIEDVERLYAFYDTDKTGAISSETLKMVFDDLKI 154
BLAST of mRNA_L-elsbetiae_contig1199.1695.1 vs. uniprot
Match: A0A836CMC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC0_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.380e-8 Identity = 65/234 (27.78%), Postives = 91/234 (38.89%), Query Frame = 1 Query: 1 QVWIALGTEGGRLACWTLEDILASDATRMPGLKLRPVPSCLCPGLRSSFNPYSEKVEVSSTREQSEILLDSKRVCLSGNGSASSLRSEEGXXXXXXXXXARGGSVTIVGPAPTDGGGIGFEDEDDEDCSWFIAEAAAPKAVWQGHLGPITRIGSCAQPP-CFFSLGEDGYQRTWSIEGKVLGQFALPNASDNHA------PHLQAFPRHRVELSCRFRSRAAAPRRDDSQPPGR 681 V+IA GTE GR+ W L ++L + + L R +P+ CP S+ P + V+ E G+ S L VT P P +G E WQ H+G + +G A P C+F+LG+DG Q+ WS G +LG LPNA+D H P FP R+ + + S AAA R + P R Sbjct: 1274 DVYIAAGTESGRVLRWELSEVLGTLSDAHFALA-RLIPNKECPAHHRSYTPLATLVKEGRIVE--------------GSKSCGEL-------------------VTSSPPPPI----VGHSME------------------WQAHIGMVQVVGVGASAPRCWFTLGDDGVQQIWSAAGDLLGDILLPNATDEHIDQRGNPPPEWRFPLSRIVVHAQHHSTAAALLRQIAAAPAR 1451 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1199.1695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1199.1695.1 >prot_L-elsbetiae_contig1199.1695.1 ID=prot_L-elsbetiae_contig1199.1695.1|Name=mRNA_L-elsbetiae_contig1199.1695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1081bp MATSGRGQSKGRSSGSSPCQTPQTTTRRICRLFRDIGWSFLVDSVRVRPLback to top mRNA from alignment at L-elsbetiae_contig1199:17113..28086- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1199.1695.1 ID=mRNA_L-elsbetiae_contig1199.1695.1|Name=mRNA_L-elsbetiae_contig1199.1695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10974bp|location=Sequence derived from alignment at L-elsbetiae_contig1199:17113..28086- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1199:17113..28086- >mRNA_L-elsbetiae_contig1199.1695.1 ID=mRNA_L-elsbetiae_contig1199.1695.1|Name=mRNA_L-elsbetiae_contig1199.1695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6486bp|location=Sequence derived from alignment at L-elsbetiae_contig1199:17113..28086- (Laminarionema elsbetiae ELsaHSoW15)back to top |