mRNA_L-elsbetiae_contig11981.1691.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11981.1691.1
Unique NamemRNA_L-elsbetiae_contig11981.1691.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11981.1691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11981contigL-elsbetiae_contig11981:1538..2006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size469
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11981.1691.1prot_L-elsbetiae_contig11981.1691.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11981 1576..1929 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.755674-UTR-L-elsbetiae_contig11981:1537..15751622815397.755674-UTR-L-elsbetiae_contig11981:1537..1575Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11981 1538..1575 +
1691682878.5849159-UTR-L-elsbetiae_contig11981:1537..15751691682878.5849159-UTR-L-elsbetiae_contig11981:1537..1575Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11981 1538..1575 +
1622815397.8232799-UTR-L-elsbetiae_contig11981:1929..20061622815397.8232799-UTR-L-elsbetiae_contig11981:1929..2006Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11981 1930..2006 +
1691682878.6049485-UTR-L-elsbetiae_contig11981:1929..20061691682878.6049485-UTR-L-elsbetiae_contig11981:1929..2006Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11981 1930..2006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.8053234-CDS-L-elsbetiae_contig11981:1575..19291622815397.8053234-CDS-L-elsbetiae_contig11981:1575..1929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11981 1576..1929 +
1691682878.5968769-CDS-L-elsbetiae_contig11981:1575..19291691682878.5968769-CDS-L-elsbetiae_contig11981:1575..1929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11981 1576..1929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11981.1691.1

>prot_L-elsbetiae_contig11981.1691.1 ID=prot_L-elsbetiae_contig11981.1691.1|Name=mRNA_L-elsbetiae_contig11981.1691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MQKPTTKHRIPTTHGSANGAKTIYRYGWSWMQAHNTPAVCMRCFGYSMPS
PRDTLNTPYRLPAAFQMPQPYFQIPARRGGGVNARFFYHVPFRMQRMRRI
TTTDWLVPGTFIKALTP*
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mRNA from alignment at L-elsbetiae_contig11981:1538..2006+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11981.1691.1 ID=mRNA_L-elsbetiae_contig11981.1691.1|Name=mRNA_L-elsbetiae_contig11981.1691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=469bp|location=Sequence derived from alignment at L-elsbetiae_contig11981:1538..2006+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCGTTTCACTTGAACAGATACATACGTTGCCCTGACATGCAAAAGCCC
ACCACCAAACACCGGATACCAACGACTCATGGCTCTGCCAATGGAGCAAA
GACTATCTACCGTTATGGTTGGTCTTGGATGCAAGCTCACAATACGCCTG
CGGTGTGCATGAGATGTTTTGGATACAGCATGCCCTCGCCGAGGGACACA
CTCAACACCCCATATCGACTTCCGGCAGCTTTCCAAATGCCTCAACCGTA
CTTCCAAATACCGGCGAGGCGGGGGGGGGGCGTTAACGCGCGTTTTTTCT
ACCATGTGCCGTTTAGGATGCAACGCATGCGGCGGATTACAACCACTGAC
TGGCTAGTCCCTGGGACATTTATTAAGGCCTTGACTCCATAATTTGCAGT
CTAGACTATGTGTACCACAGGTCGTTTGTATCATGACAGCTCAGTGTCGT
TTCCACCATCTGTATCTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11981:1538..2006+

>mRNA_L-elsbetiae_contig11981.1691.1 ID=mRNA_L-elsbetiae_contig11981.1691.1|Name=mRNA_L-elsbetiae_contig11981.1691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig11981:1538..2006+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAAAGCCCACCACCAAACACCGGATACCAACGACTCATGGCTCTGC
CAATGGAGCAAAGACTATCTACCGTTATGGTTGGTCTTGGATGCAAGCTC
ACAATACGCCTGCGGTGTGCATGAGATGTTTTGGATACAGCATGCCCTCG
CCGAGGGACACACTCAACACCCCATATCGACTTCCGGCAGCTTTCCAAAT
GCCTCAACCGTACTTCCAAATACCGGCGAGGCGGGGGGGGGGCGTTAACG
CGCGTTTTTTCTACCATGTGCCGTTTAGGATGCAACGCATGCGGCGGATT
ACAACCACTGACTGGCTAGTCCCTGGGACATTTATTAAGGCCTTGACTCC
ATAAATGCAAAAGCCCACCACCAAACACCGGATACCAACGACTCATGGCT
CTGCCAATGGAGCAAAGACTATCTACCGTTATGGTTGGTCTTGGATGCAA
GCTCACAATACGCCTGCGGTGTGCATGAGATGTTTTGGATACAGCATGCC
CTCGCCGAGGGACACACTCAACACCCCATATCGACTTCCGGCAGCTTTCC
AAATGCCTCAACCGTACTTCCAAATACCGGCGAGGCGGGGGGGGGGCGTT
AACGCGCGTTTTTTCTACCATGTGCCGTTTAGGATGCAACGCATGCGGCG
GATTACAACCACTGACTGGCTAGTCCCTGGGACATTTATTAAGGCCTTGA
CTCCATAA
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