mRNA_L-elsbetiae_contig11980.1690.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11980.1690.1
Unique NamemRNA_L-elsbetiae_contig11980.1690.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11980.1690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11980contigL-elsbetiae_contig11980:2944..3471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size530
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.7238722-CDS-L-elsbetiae_contig11980:2943..34711622815397.7238722-CDS-L-elsbetiae_contig11980:2943..3471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11980 2944..3471 +
1691682878.5752184-CDS-L-elsbetiae_contig11980:2943..34711691682878.5752184-CDS-L-elsbetiae_contig11980:2943..3471Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11980 2944..3471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11980.1690.1prot_L-elsbetiae_contig11980.1690.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11980 2944..3471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11980.1690.1

>prot_L-elsbetiae_contig11980.1690.1 ID=prot_L-elsbetiae_contig11980.1690.1|Name=mRNA_L-elsbetiae_contig11980.1690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
ARRGGREGPRAGEAARAMLGWVGGAGSGREGREGGGRRRPRRAAAAGVNY
AVLHAPPPLEDPDEDGDGDESGTGDDGDGGGGGRRKASKAAGAKRPRRTE
PSPKKKPSRHKKGKRKFCAEMSDFVVSISDSDGGEGDISSSGADGSYSSS
SDDDDDDEVAAPRTKRARVSRRRAGG
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mRNA from alignment at L-elsbetiae_contig11980:2944..3471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11980.1690.1 ID=mRNA_L-elsbetiae_contig11980.1690.1|Name=mRNA_L-elsbetiae_contig11980.1690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig11980:2944..3471+ (Laminarionema elsbetiae ELsaHSoW15)
GCAAGACGAGGTGGGAGGGAGGGGCCGAGAGCGGGAGAGGCAGCCAGGGC
GATGCTCGGTTGGGTAGGCGGGGCTGGAAGCGGACGCGAAGGTAGAGAAG
GCGGGGGCCGACGGAGGCCAAGGCGTGCCGCGGCGGCTGGGGTCAACTAC
GCCGTTCTCCACGCGCCCCCCCCCCTTGAGGACCCCGACGAGGACGGCGA
CGGCGACGAGAGCGGTACCGGTGATGACGGTGATGGCGGTGGCGGTGGAC
GGCGGAAGGCTTCCAAGGCCGCCGGGGCCAAGAGGCCGAGGAGAACGGAG
CCAAGCCCAAAGAAGAAACCCAGCAGGCACAAGAAGGGGAAACGTAAATT
TTGCGCCGAGATGAGTGACTTTGTTGTCTCGATCAGCGACAGCGACGGCG
GCGAGGGCGATATTTCTTCTTCTGGTGCCGATGGTTCTTATTCTTCTTCG
TCTGACGACGATGATGACGATGAGGTTGCGGCGCCGCGGACCAAGAGAGC
GCGCGTGTCAAGGAGAAGAGCCGGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11980:2944..3471+

>mRNA_L-elsbetiae_contig11980.1690.1 ID=mRNA_L-elsbetiae_contig11980.1690.1|Name=mRNA_L-elsbetiae_contig11980.1690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig11980:2944..3471+ (Laminarionema elsbetiae ELsaHSoW15)
GCAAGACGAGGTGGGAGGGAGGGGCCGAGAGCGGGAGAGGCAGCCAGGGC
GATGCTCGGTTGGGTAGGCGGGGCTGGAAGCGGACGCGAAGGTAGAGAAG
GCGGGGGCCGACGGAGGCCAAGGCGTGCCGCGGCGGCTGGGGTCAACTAC
GCCGTTCTCCACGCGCCCCCCCCCCTTGAGGACCCCGACGAGGACGGCGA
CGGCGACGAGAGCGGTACCGGTGATGACGGTGATGGCGGTGGCGGTGGAC
GGCGGAAGGCTTCCAAGGCCGCCGGGGCCAAGAGGCCGAGGAGAACGGAG
CCAAGCCCAAAGAAGAAACCCAGCAGGCACAAGAAGGGGAAACGTAAATT
TTGCGCCGAGATGAGTGACTTTGTTGTCTCGATCAGCGACAGCGACGGCG
GCGAGGGCGATATTTCTTCTTCTGGTGCCGATGGTTCTTATTCTTCTTCG
TCTGACGACGATGATGACGATGAGGTTGCGGCGCCGCGGACCAAGAGAGC
GCGCGTGTCAAGGAGAAGAGCCGGGGGCGCAAGACGAGGTGGGAGGGAGG
GGCCGAGAGCGGGAGAGGCAGCCAGGGCGATGCTCGGTTGGGTAGGCGGG
GCTGGAAGCGGACGCGAAGGTAGAGAAGGCGGGGGCCGACGGAGGCCAAG
GCGTGCCGCGGCGGCTGGGGTCAACTACGCCGTTCTCCACGCGCCCCCCC
CCCTTGAGGACCCCGACGAGGACGGCGACGGCGACGAGAGCGGTACCGGT
GATGACGGTGATGGCGGTGGCGGTGGACGGCGGAAGGCTTCCAAGGCCGC
CGGGGCCAAGAGGCCGAGGAGAACGGAGCCAAGCCCAAAGAAGAAACCCA
GCAGGCACAAGAAGGGGAAACGTAAATTTTGCGCCGAGATGAGTGACTTT
GTTGTCTCGATCAGCGACAGCGACGGCGGCGAGGGCGATATTTCTTCTTC
TGGTGCCGATGGTTCTTATTCTTCTTCGTCTGACGACGATGATGACGATG
AGGTTGCGGCGCCGCGGACCAAGAGAGCGCGCGTGTCAAGGAGAAGAGCC
GGGGGC
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