mRNA_L-elsbetiae_contig11980.1689.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11980.1689.1
Unique NamemRNA_L-elsbetiae_contig11980.1689.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11980.1689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11980contigL-elsbetiae_contig11980:818..1884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.6804628-CDS-L-elsbetiae_contig11980:817..9281622815397.6804628-CDS-L-elsbetiae_contig11980:817..928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11980 818..928 +
1691682878.5583825-CDS-L-elsbetiae_contig11980:817..9281691682878.5583825-CDS-L-elsbetiae_contig11980:817..928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11980 818..928 +
1622815397.6913931-CDS-L-elsbetiae_contig11980:1620..18841622815397.6913931-CDS-L-elsbetiae_contig11980:1620..1884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11980 1621..1884 +
1691682878.5672712-CDS-L-elsbetiae_contig11980:1620..18841691682878.5672712-CDS-L-elsbetiae_contig11980:1620..1884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11980 1621..1884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11980.1689.1prot_L-elsbetiae_contig11980.1689.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11980 818..1884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11980.1689.1

>prot_L-elsbetiae_contig11980.1689.1 ID=prot_L-elsbetiae_contig11980.1689.1|Name=mRNA_L-elsbetiae_contig11980.1689.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
LASQKTPTATAPSAMSRRRIRRTVREDSDSSDDEAGTALLRRMRSKSVRR
LSVNDDDDEDEDEDDDDGAGNTDEEGDEDVLLVEDGRSRAPPSIPTAGSG
AGLGGDTGTGTGTGAGAGADGGDAD
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mRNA from alignment at L-elsbetiae_contig11980:818..1884+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11980.1689.1 ID=mRNA_L-elsbetiae_contig11980.1689.1|Name=mRNA_L-elsbetiae_contig11980.1689.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1067bp|location=Sequence derived from alignment at L-elsbetiae_contig11980:818..1884+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGCATCACAAAAAACACCCACAGCCACAGCACCATCAGCCATGTCGCG
GAGAAGGATTCGCCGTACTGTCCGCGAAGACAGCGACAGCAGCGACGATG
AAGCGGGAACGGTAAACTCTCTCTTTCGGTCGGCCTTTTTTTTGAGGTGG
TCTCCAGACACAAAACGACAAGTTTGACGTGTTGGCGTGTTGGCGGAGGG
TGTCGGTACGGTGGCGGTATGCAGTGTAGTCGCACACACTTTCGCAATGT
CCACATGCTTACCTTCGATACGGCACAGTCAGCGAGGATCCCTCGTTAAC
ACTTGGCGGGGCCACGGGCTACGGCCCAGTTTTCGTGGCTCGTCTTCAGG
CTTGGTTCTTTCTTCACCCGTAAATTGTCTTCGCGCCTTTTCAGAGGGAG
GAGCCGTTGTTGTGTATCTACAATATGTACACATGTACATGCATACAAAT
CTAGATACGGTACATCTAAATCTTGTACAATATATCTAGACTAGCCCTCC
CGCAACTAGACCTATTATACATCCATATGCACCTATGTGTAGTCTAGACA
GACGTGTCTCCTCCTCTGTCATCGGCGAGGTGCTACTAGCACACGTTCTT
GTGTACCAGTGCGGTTGTGTCTCGCGCAACCTAGGCTGAAGAACCCTCTG
CAACCATATCATATCACGACCACGCGCTTCAATTTTGTAGCGCGTAAGAT
TGCAAGGAGGATATTACATACATACATACCTGTACATACTGTACAAATAA
CATACACACGTGTACCTCAACGAATCACCTCCTGCCACCCCCCATCCTCT
CAGGCTTTGCTTCGCCGAATGAGGTCTAAGTCGGTGCGAAGGCTCTCGGT
CAATGATGACGACGATGAGGACGAAGATGAAGATGACGATGACGGCGCCG
GAAACACGGACGAAGAAGGTGACGAAGATGTCCTACTTGTAGAGGACGGC
CGGAGCCGAGCACCACCATCGATCCCTACCGCGGGGAGTGGCGCTGGGTT
GGGTGGCGATACTGGTACTGGTACTGGTACTGGTGCTGGTGCTGGTGCTG
ATGGCGGCGATGCGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11980:818..1884+

>mRNA_L-elsbetiae_contig11980.1689.1 ID=mRNA_L-elsbetiae_contig11980.1689.1|Name=mRNA_L-elsbetiae_contig11980.1689.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig11980:818..1884+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGCATCACAAAAAACACCCACAGCCACAGCACCATCAGCCATGTCGCG
GAGAAGGATTCGCCGTACTGTCCGCGAAGACAGCGACAGCAGCGACGATG
AAGCGGGAACGCTTGCATCACAAAAAACACCCACAGCCACAGCACCATCA
GCCATGTCGCGGAGAAGGATTCGCCGTACTGTCCGCGAAGACAGCGACAG
CAGCGACGATGAAGCGGGAACGGCTTTGCTTCGCCGAATGAGGTCTAAGT
CGGTGCGAAGGCTCTCGGTCAATGATGACGACGATGAGGACGAAGATGAA
GATGACGATGACGGCGCCGGAAACACGGACGAAGAAGGTGACGAAGATGT
CCTACTTGTAGAGGACGGCCGGAGCCGAGCACCACCATCGATCCCTACCG
CGGGGAGTGGCGCTGGGTTGGGTGGCGATACTGGTACTGGTACTGGTACT
GGTGCTGGTGCTGGTGCTGATGGCGGCGATGCGGACGCTTTGCTTCGCCG
AATGAGGTCTAAGTCGGTGCGAAGGCTCTCGGTCAATGATGACGACGATG
AGGACGAAGATGAAGATGACGATGACGGCGCCGGAAACACGGACGAAGAA
GGTGACGAAGATGTCCTACTTGTAGAGGACGGCCGGAGCCGAGCACCACC
ATCGATCCCTACCGCGGGGAGTGGCGCTGGGTTGGGTGGCGATACTGGTA
CTGGTACTGGTACTGGTGCTGGTGCTGGTGCTGATGGCGGCGATGCGGAC
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