mRNA_L-elsbetiae_contig11979.1684.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11979.1684.1
Unique NamemRNA_L-elsbetiae_contig11979.1684.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11979.1684.1 vs. uniprot
Match: D7G2R7_ECTSI (Protein RFT1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R7_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 4.760e-19
Identity = 61/115 (53.04%), Postives = 75/115 (65.22%), Query Frame = -3 
Query:  288 NLWRELVAGALPHPGVVAAMAASSVAAFAASPSSP--GGSDGGVAWDAAGAAKHVGVGAACFVATAAVFARCEAEFVGEVAALWAARRRP---PSRGEGGXXDGGVDGGRREKTD 617
            NLWRE+V GA+PHPGVV+ MA SS AA+A SP++    G +GG   D   AAKHVGVG  CF+ TAAVF +CE  F+ E+ ALWAARR P     RG G      +DG   +K+D
Sbjct:  654 NLWREVVTGAVPHPGVVSIMALSSAAAYATSPAARHVAGGNGGAPLD---AAKHVGVGLVCFLVTAAVFVKCEGAFLRELGALWAARRPPGPDAGRGAGSGDAAALDGA--DKSD 763
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11979.1684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2R7_ECTSI4.760e-1953.04Protein RFT1 homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11979contigL-elsbetiae_contig11979:4725..5397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size674
Cds size423
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.1371577-UTR-L-elsbetiae_contig11979:4724..49741622815397.1371577-UTR-L-elsbetiae_contig11979:4724..4974Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11979 4725..4974 +
1691682878.273913-UTR-L-elsbetiae_contig11979:4724..49741691682878.273913-UTR-L-elsbetiae_contig11979:4724..4974Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11979 4725..4974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.183408-CDS-L-elsbetiae_contig11979:4974..53971622815397.183408-CDS-L-elsbetiae_contig11979:4974..5397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11979 4975..5397 +
1691682878.2826247-CDS-L-elsbetiae_contig11979:4974..53971691682878.2826247-CDS-L-elsbetiae_contig11979:4974..5397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11979 4975..5397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11979.1684.1prot_L-elsbetiae_contig11979.1684.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11979 4975..5397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11979.1684.1

>prot_L-elsbetiae_contig11979.1684.1 ID=prot_L-elsbetiae_contig11979.1684.1|Name=mRNA_L-elsbetiae_contig11979.1684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MNSTQNTHEPLINPFSPAARRRHHHHHHHLPRDSADDGEPPTARPPPPQT
PPRIWRRPPPWRRSTPLRPPRAWPHRPRPKQRRRRCRREKKARPRTPRRR
TRPWRRPRRGGGAPRPQVLATGCSSSRGGGGSVFVASASAS
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mRNA from alignment at L-elsbetiae_contig11979:4725..5397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11979.1684.1 ID=mRNA_L-elsbetiae_contig11979.1684.1|Name=mRNA_L-elsbetiae_contig11979.1684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=673bp|location=Sequence derived from alignment at L-elsbetiae_contig11979:4725..5397+ (Laminarionema elsbetiae ELsaHSoW15)
TTCTTTTCCAACTTTCAACTCTTTTTTTAAGGGCACCTCACTTTTCGACA
GCTCGTTCATACTCGGCATGTAGCAGCCGAATCGGCAACAACGAGCACAT
CTATGCCATACATATGATGGTATCGATCGAAAGAGCTGCAAAATTCCTGT
CCACCCTGAAAAAAAACGATAATTTGGCGGGCGGCCGCAGGACCGGCAGG
CACACCACCAAACTAACCGGCACGTTTGTCCCCCTGCCGCAAAAAAAACA
ATGAACTCAACTCAAAACACGCATGAACCCTTAATTAATCCGTTTTCTCC
CGCCGCCCGCCGTCGACACCACCATCACCACCACCACCTTCCCCGCGACT
CGGCGGACGACGGCGAGCCGCCCACAGCGCGGCCACCTCCCCCACAAACT
CCGCCTCGCATCTGGCGAAGACCGCCGCCGTGGCGACGAAGCACGCCGCT
CCGACCCCCACGTGCTTGGCCGCACCGGCCGCGTCCCAAGCAACGCCGCC
GTCGCTGCCGCCGGGAGAAGAAGGCGAGGCCGCGAACGCCGCGACGGAGG
ACGCGGCCATGGCGGCGACCACGCCGGGGTGGGGGAGCGCCCCGGCCACA
AGTTCTCGCCACAGGTTGCTCCTCCTCTCGCGGTGGTGGTGGTTCGGTTT
TCGTCGCGTCCGCGTCCGCATCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11979:4725..5397+

>mRNA_L-elsbetiae_contig11979.1684.1 ID=mRNA_L-elsbetiae_contig11979.1684.1|Name=mRNA_L-elsbetiae_contig11979.1684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig11979:4725..5397+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACTCAACTCAAAACACGCATGAACCCTTAATTAATCCGTTTTCTCC
CGCCGCCCGCCGTCGACACCACCATCACCACCACCACCTTCCCCGCGACT
CGGCGGACGACGGCGAGCCGCCCACAGCGCGGCCACCTCCCCCACAAACT
CCGCCTCGCATCTGGCGAAGACCGCCGCCGTGGCGACGAAGCACGCCGCT
CCGACCCCCACGTGCTTGGCCGCACCGGCCGCGTCCCAAGCAACGCCGCC
GTCGCTGCCGCCGGGAGAAGAAGGCGAGGCCGCGAACGCCGCGACGGAGG
ACGCGGCCATGGCGGCGACCACGCCGGGGTGGGGGAGCGCCCCGGCCACA
AGTTCTCGCCACAGGTTGCTCCTCCTCTCGCGGTGGTGGTGGTTCGGTTT
TCGTCGCGTCCGCGTCCGCATCCATGAACTCAACTCAAAACACGCATGAA
CCCTTAATTAATCCGTTTTCTCCCGCCGCCCGCCGTCGACACCACCATCA
CCACCACCACCTTCCCCGCGACTCGGCGGACGACGGCGAGCCGCCCACAG
CGCGGCCACCTCCCCCACAAACTCCGCCTCGCATCTGGCGAAGACCGCCG
CCGTGGCGACGAAGCACGCCGCTCCGACCCCCACGTGCTTGGCCGCACCG
GCCGCGTCCCAAGCAACGCCGCCGTCGCTGCCGCCGGGAGAAGAAGGCGA
GGCCGCGAACGCCGCGACGGAGGACGCGGCCATGGCGGCGACCACGCCGG
GGTGGGGGAGCGCCCCGGCCACAAGTTCTCGCCACAGGTTGCTCCTCCTC
TCGCGGTGGTGGTGGTTCGGTTTTCGTCGCGTCCGCGTCCGCATCC
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