mRNA_L-elsbetiae_contig11974.1680.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11974.1680.1
Unique NamemRNA_L-elsbetiae_contig11974.1680.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11974.1680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11974contigL-elsbetiae_contig11974:2559..2995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size437
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11974.1680.1prot_L-elsbetiae_contig11974.1680.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11974 2561..2989 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815396.9152024-UTR-L-elsbetiae_contig11974:2558..25601622815396.9152024-UTR-L-elsbetiae_contig11974:2558..2560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11974 2559..2560 +
1691682878.1818695-UTR-L-elsbetiae_contig11974:2558..25601691682878.1818695-UTR-L-elsbetiae_contig11974:2558..2560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11974 2559..2560 +
1622815397.0195465-UTR-L-elsbetiae_contig11974:2989..29951622815397.0195465-UTR-L-elsbetiae_contig11974:2989..2995Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11974 2990..2995 +
1691682878.2032526-UTR-L-elsbetiae_contig11974:2989..29951691682878.2032526-UTR-L-elsbetiae_contig11974:2989..2995Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11974 2990..2995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815396.9309306-CDS-L-elsbetiae_contig11974:2560..29891622815396.9309306-CDS-L-elsbetiae_contig11974:2560..2989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11974 2561..2989 +
1691682878.1944041-CDS-L-elsbetiae_contig11974:2560..29891691682878.1944041-CDS-L-elsbetiae_contig11974:2560..2989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11974 2561..2989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11974.1680.1

>prot_L-elsbetiae_contig11974.1680.1 ID=prot_L-elsbetiae_contig11974.1680.1|Name=mRNA_L-elsbetiae_contig11974.1680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MYHFLVLFFFVSVSAYGVDGVSGPPAGLRMRGSAHAALSLWPPERPGGAK
KGRDGCYKWPSYLYTSRKKQEERAGEKEEVGRVLGLSVSGAQTEPSRGVP
KSFIAVVKKNGDELDDECCCLSSSPQGPDGGATKSEEKCLLC*
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mRNA from alignment at L-elsbetiae_contig11974:2559..2995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11974.1680.1 ID=mRNA_L-elsbetiae_contig11974.1680.1|Name=mRNA_L-elsbetiae_contig11974.1680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=437bp|location=Sequence derived from alignment at L-elsbetiae_contig11974:2559..2995+ (Laminarionema elsbetiae ELsaHSoW15)
GTATGTATCATTTTCTCGTTCTTTTTTTTTTTGTTTCGGTCTCGGCGTAC
GGAGTGGATGGAGTGAGTGGCCCCCCAGCTGGTTTACGCATGAGGGGCAG
CGCGCATGCTGCTTTGAGTCTCTGGCCCCCCGAACGGCCTGGCGGGGCAA
AGAAAGGGCGCGATGGCTGTTATAAATGGCCTTCCTACCTGTATACCTCA
AGAAAGAAGCAGGAGGAGAGGGCGGGAGAGAAAGAGGAGGTTGGCCGCGT
CTTGGGCCTTTCCGTTTCCGGCGCACAAACAGAGCCATCCCGGGGGGTGC
CGAAAAGTTTTATTGCAGTCGTGAAAAAAAATGGCGATGAATTGGATGAT
GAGTGTTGTTGTTTATCTTCGAGCCCCCAAGGTCCAGACGGCGGCGCCAC
GAAATCAGAAGAAAAGTGTCTTCTGTGCTGAACACAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11974:2559..2995+

>mRNA_L-elsbetiae_contig11974.1680.1 ID=mRNA_L-elsbetiae_contig11974.1680.1|Name=mRNA_L-elsbetiae_contig11974.1680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig11974:2559..2995+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATCATTTTCTCGTTCTTTTTTTTTTTGTTTCGGTCTCGGCGTACGG
AGTGGATGGAGTGAGTGGCCCCCCAGCTGGTTTACGCATGAGGGGCAGCG
CGCATGCTGCTTTGAGTCTCTGGCCCCCCGAACGGCCTGGCGGGGCAAAG
AAAGGGCGCGATGGCTGTTATAAATGGCCTTCCTACCTGTATACCTCAAG
AAAGAAGCAGGAGGAGAGGGCGGGAGAGAAAGAGGAGGTTGGCCGCGTCT
TGGGCCTTTCCGTTTCCGGCGCACAAACAGAGCCATCCCGGGGGGTGCCG
AAAAGTTTTATTGCAGTCGTGAAAAAAAATGGCGATGAATTGGATGATGA
GTGTTGTTGTTTATCTTCGAGCCCCCAAGGTCCAGACGGCGGCGCCACGA
AATCAGAAGAAAAGTGTCTTCTGTGCTGAATGTATCATTTTCTCGTTCTT
TTTTTTTTTGTTTCGGTCTCGGCGTACGGAGTGGATGGAGTGAGTGGCCC
CCCAGCTGGTTTACGCATGAGGGGCAGCGCGCATGCTGCTTTGAGTCTCT
GGCCCCCCGAACGGCCTGGCGGGGCAAAGAAAGGGCGCGATGGCTGTTAT
AAATGGCCTTCCTACCTGTATACCTCAAGAAAGAAGCAGGAGGAGAGGGC
GGGAGAGAAAGAGGAGGTTGGCCGCGTCTTGGGCCTTTCCGTTTCCGGCG
CACAAACAGAGCCATCCCGGGGGGTGCCGAAAAGTTTTATTGCAGTCGTG
AAAAAAAATGGCGATGAATTGGATGATGAGTGTTGTTGTTTATCTTCGAG
CCCCCAAGGTCCAGACGGCGGCGCCACGAAATCAGAAGAAAAGTGTCTTC
TGTGCTGA
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