mRNA_L-elsbetiae_contig11972.1679.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11972.1679.1
Unique NamemRNA_L-elsbetiae_contig11972.1679.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11972.1679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11972contigL-elsbetiae_contig11972:5193..5730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size540
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815396.863484-UTR-L-elsbetiae_contig11972:5192..53911622815396.863484-UTR-L-elsbetiae_contig11972:5192..5391Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11972 5193..5391 +
1691682878.151518-UTR-L-elsbetiae_contig11972:5192..53911691682878.151518-UTR-L-elsbetiae_contig11972:5192..5391Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11972 5193..5391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815396.8765972-CDS-L-elsbetiae_contig11972:5391..57301622815396.8765972-CDS-L-elsbetiae_contig11972:5391..5730Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11972 5392..5730 +
1691682878.1695437-CDS-L-elsbetiae_contig11972:5391..57301691682878.1695437-CDS-L-elsbetiae_contig11972:5391..5730Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11972 5392..5730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11972.1679.1prot_L-elsbetiae_contig11972.1679.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11972 5392..5730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11972.1679.1

>prot_L-elsbetiae_contig11972.1679.1 ID=prot_L-elsbetiae_contig11972.1679.1|Name=mRNA_L-elsbetiae_contig11972.1679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MRRVRILLLGQPSHSWSDSDGCVCAPTRPGISHMCVFMPWLVVVCYAVLC
AADFFGYPICLSVGNIKRGVLCHGCGLMCRTARRRVLVRGNFPSNKDAVR
AQQGTIWDKERCS
back to top

mRNA from alignment at L-elsbetiae_contig11972:5193..5730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11972.1679.1 ID=mRNA_L-elsbetiae_contig11972.1679.1|Name=mRNA_L-elsbetiae_contig11972.1679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=538bp|location=Sequence derived from alignment at L-elsbetiae_contig11972:5193..5730+ (Laminarionema elsbetiae ELsaHSoW15)
ATTACGGTAACTTCCTGGAGACCAGACTGACTTCCATGGAAGTATGTAAA
ACGCTTGGGCACGTCGCTTCCATAAATAATTGTTTGTCCATGGGAAGTTT
CAAGCGTACCTTCCATGGAGGCGCCTTCATGGCAGCAGGGGGGTGACGGA
CATCAACATAATTGGTTAGTAAACGGTCCGCTCCTCGCCCCAGCGAGGTA
TGCGTCGAGTACGGATACTGTTGTTGGGTCAACCCAGCCACAGCTGGTCA
GACAGCGATGGGTGTGTCTGTGCGCCGACTCGACCTGGGATATCCCATAT
GTGTGTGTTTATGCCATGGTTGGTTGTGGTTTGTTACGCCGTGTTGTGCG
CCGCCGACTTCTTCGGTTATCCCATATGTTTGTCCGTGGGTAACATCAAA
CGCGGGGTATTGTGCCATGGCTGTGGTTTGATGTGCCGTACAGCGCGCAG
AAGAGTCTTAGTGCGGGGCAATTTCCCGTCTAATAAGGATGCAGTTCGGG
CGCAGCAGGGTACAATTTGGGACAAAGAAAGATGCAGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11972:5193..5730+

>mRNA_L-elsbetiae_contig11972.1679.1 ID=mRNA_L-elsbetiae_contig11972.1679.1|Name=mRNA_L-elsbetiae_contig11972.1679.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig11972:5193..5730+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTCGAGTACGGATACTGTTGTTGGGTCAACCCAGCCACAGCTGGTC
AGACAGCGATGGGTGTGTCTGTGCGCCGACTCGACCTGGGATATCCCATA
TGTGTGTGTTTATGCCATGGTTGGTTGTGGTTTGTTACGCCGTGTTGTGC
GCCGCCGACTTCTTCGGTTATCCCATATGTTTGTCCGTGGGTAACATCAA
ACGCGGGGTATTGTGCCATGGCTGTGGTTTGATGTGCCGTACAGCGCGCA
GAAGAGTCTTAGTGCGGGGCAATTTCCCGTCTAATAAGGATGCAGTTCGG
GCGCAGCAGGGTACAATTTGGGACAAAGAAAGATGCAGCATGCGTCGAGT
ACGGATACTGTTGTTGGGTCAACCCAGCCACAGCTGGTCAGACAGCGATG
GGTGTGTCTGTGCGCCGACTCGACCTGGGATATCCCATATGTGTGTGTTT
ATGCCATGGTTGGTTGTGGTTTGTTACGCCGTGTTGTGCGCCGCCGACTT
CTTCGGTTATCCCATATGTTTGTCCGTGGGTAACATCAAACGCGGGGTAT
TGTGCCATGGCTGTGGTTTGATGTGCCGTACAGCGCGCAGAAGAGTCTTA
GTGCGGGGCAATTTCCCGTCTAATAAGGATGCAGTTCGGGCGCAGCAGGG
TACAATTTGGGACAAAGAAAGATGCAGC
back to top