mRNA_L-elsbetiae_contig11960.1674.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11960.1674.1
Unique NamemRNA_L-elsbetiae_contig11960.1674.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11960.1674.1 vs. uniprot
Match: D8LBI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI8_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.860e-33
Identity = 69/91 (75.82%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:   10 DGVSAADLAPYGEADLSMALTAPPERLQRSAAETDPFDGRFLVPVGAARRVREAVARLVRLVDES-PEGRILECQAIEATVDCVEACFRRR 279
            DGVS ADLAPYGEA+LS ALT PPERLQRSAAE +PFD RFLVP  AAR V+EAVARLV L DES P GR LEC+A++A  DCVEACFRR+
Sbjct:  288 DGVSPADLAPYGEAELSTALTVPPERLQRSAAEANPFDDRFLVPADAARGVKEAVARLVSLADESGPAGRNLECEALDAAADCVEACFRRQ 378
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BLAST of mRNA_L-elsbetiae_contig11960.1674.1 vs. uniprot
Match: A0A6H5JNJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ9_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.520e-32
Identity = 69/91 (75.82%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:   10 DGVSAADLAPYGEADLSMALTAPPERLQRSAAETDPFDGRFLVPVGAARRVREAVARLVRLVDES-PEGRILECQAIEATVDCVEACFRRR 279
            DGVS ADLAPYGEADLS ALT PPERLQRSAAE +PFD RFLVP  AAR V+EAVARLV LVDES P GR LEC+A++A  D +EACFRR+
Sbjct:  274 DGVSPADLAPYGEADLSTALTVPPERLQRSAAEANPFDDRFLVPADAARGVKEAVARLVSLVDESGPAGRNLECEALDAAADRMEACFRRQ 364
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11960.1674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBI8_ECTSI2.860e-3375.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNJ9_9PHAE2.520e-3275.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11960contigL-elsbetiae_contig11960:1305..2308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003830.1
Exons2
Model size388
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815396.4454272-CDS-L-elsbetiae_contig11960:1306..14651622815396.4454272-CDS-L-elsbetiae_contig11960:1306..1465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11960 1307..1465 -
1691682877.9484618-CDS-L-elsbetiae_contig11960:1306..14651691682877.9484618-CDS-L-elsbetiae_contig11960:1306..1465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11960 1307..1465 -
1622815396.4593234-CDS-L-elsbetiae_contig11960:2083..23081622815396.4593234-CDS-L-elsbetiae_contig11960:2083..2308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11960 2084..2308 -
1691682877.957889-CDS-L-elsbetiae_contig11960:2083..23081691682877.957889-CDS-L-elsbetiae_contig11960:2083..2308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11960 2084..2308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11960.1674.1prot_L-elsbetiae_contig11960.1674.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11960 1307..2308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11960.1674.1

>prot_L-elsbetiae_contig11960.1674.1 ID=prot_L-elsbetiae_contig11960.1674.1|Name=mRNA_L-elsbetiae_contig11960.1674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
VAVDGVSAADLAPYGEADLSMALTAPPERLQRSAAETDPFDGRFLVPVGA
ARRVREAVARLVRLVDESPEGRILECQAIEATVDCVEACFRRRRTERTAP
PPPPPPAGGGAGLDPSTGAGAAAPAAAP
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mRNA from alignment at L-elsbetiae_contig11960:1305..2308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11960.1674.1 ID=mRNA_L-elsbetiae_contig11960.1674.1|Name=mRNA_L-elsbetiae_contig11960.1674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1004bp|location=Sequence derived from alignment at L-elsbetiae_contig11960:1305..2308- (Laminarionema elsbetiae ELsaHSoW15)
GTCGCGGTCGACGGAGTGTCCGCCGCCGACCTGGCGCCGTACGGAGAAGC
GGACCTGTCCATGGCGCTTACCGCCCCACCGGAGAGGCTGCAGCGCTCCG
CCGCGGAGACCGACCCGTTCGACGGCCGCTTTCTGGTGCCGGTGGGTGCC
GCCCGCAGGGTACGGGAGGCCGTAGCGCGGCTCGTGAGGCTTGTTGATGA
GAGCCCGGAGGGCAGGATCCTGGAGGTATGTGGGATGTACATACGCATGA
TGTGTGACTGGTTGATTCCCCGTACGGGCCAATTATTGCTTGTGTGGAGT
GAATGTACACATCCGTCCGTACTTCGCGCGGTGTTACTTCCGGAAGTATG
CGCCGTGCTTGTGTGTCACTTGCGGCCGGGGGTGCTTTTTCCAGGAGCAG
GAGCCCCGGGCGTGCATGCGTGGCGTGCGTGCGTGCGTGCTTCGTCTGTT
TCCCTTTAGCCGTGTGTTTGTTTCAACGATAGTTTGAGACCGGTAGTGCC
TCTCCCACGGCAGTATTTATACTTTGTAACCCCAAAAAACGGGTCTATCT
ACGCAAGTAACTTGAAGGTTTTTTGGCGTGGGATTTTCGCAGCCTGTTGG
AATGATGTCGCCCCGGTGGCGGCGCTCCTGTCGCGGGCCGTGTGCTTTAG
TAACGCGGTAGTCCCGTTGCGCTTCTTGGACAGCCGCTGGAAGCAGTGCA
TACATGCATACTTCAAGTGCATACCTGTAGAGGCGCACGAACCATCGTTC
ACGCAACTCAACCAATAACTACTGAACAAACCCAACACCGCCGACCGTCC
CCTTGTGTTTTGTCTTTTTTTAAAATAAACAATTTTCTCGCAGTGCCAGG
CAATCGAGGCGACCGTCGACTGCGTCGAGGCGTGCTTCCGCCGCCGGCGC
ACGGAAAGAACGGCGCCTCCGCCCCCCCCCCCTCCTGCGGGGGGGGGGGC
AGGATTAGACCCGAGTACCGGCGCGGGCGCGGCGGCACCAGCGGCGGCAC
CAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11960:1305..2308-

>mRNA_L-elsbetiae_contig11960.1674.1 ID=mRNA_L-elsbetiae_contig11960.1674.1|Name=mRNA_L-elsbetiae_contig11960.1674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig11960:1305..2308- (Laminarionema elsbetiae ELsaHSoW15)
GTCGCGGTCGACGGAGTGTCCGCCGCCGACCTGGCGCCGTACGGAGAAGC
GGACCTGTCCATGGCGCTTACCGCCCCACCGGAGAGGCTGCAGCGCTCCG
CCGCGGAGACCGACCCGTTCGACGGCCGCTTTCTGGTGCCGGTGGGTGCC
GCCCGCAGGGTACGGGAGGCCGTAGCGCGGCTCGTGAGGCTTGTTGATGA
GAGCCCGGAGGGCAGGATCCTGGAGGTCGCGGTCGACGGAGTGTCCGCCG
CCGACCTGGCGCCGTACGGAGAAGCGGACCTGTCCATGGCGCTTACCGCC
CCACCGGAGAGGCTGCAGCGCTCCGCCGCGGAGACCGACCCGTTCGACGG
CCGCTTTCTGGTGCCGGTGGGTGCCGCCCGCAGGGTACGGGAGGCCGTAG
CGCGGCTCGTGAGGCTTGTTGATGAGAGCCCGGAGGGCAGGATCCTGGAG
TGCCAGGCAATCGAGGCGACCGTCGACTGCGTCGAGGCGTGCTTCCGCCG
CCGGCGCACGGAAAGAACGGCGCCTCCGCCCCCCCCCCCTCCTGCGGGGG
GGGGGGCAGGATTAGACCCGAGTACCGGCGCGGGCGCGGCGGCACCAGCG
GCGGCACCATGCCAGGCAATCGAGGCGACCGTCGACTGCGTCGAGGCGTG
CTTCCGCCGCCGGCGCACGGAAAGAACGGCGCCTCCGCCCCCCCCCCCTC
CTGCGGGGGGGGGGGCAGGATTAGACCCGAGTACCGGCGCGGGCGCGGCG
GCACCAGCGGCGGCACCA
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