mRNA_L-elsbetiae_contig1196.1672.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1196.1672.1
Unique NamemRNA_L-elsbetiae_contig1196.1672.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1196.1672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1196contigL-elsbetiae_contig1196:12981..13380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size400
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815395.9727356-CDS-L-elsbetiae_contig1196:12980..133791622815395.9727356-CDS-L-elsbetiae_contig1196:12980..13379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1196 12981..13379 +
1691682877.6224382-CDS-L-elsbetiae_contig1196:12980..133791691682877.6224382-CDS-L-elsbetiae_contig1196:12980..13379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1196 12981..13379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1196.1672.1prot_L-elsbetiae_contig1196.1672.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1196 12981..13379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1196.1672.1

>prot_L-elsbetiae_contig1196.1672.1 ID=prot_L-elsbetiae_contig1196.1672.1|Name=mRNA_L-elsbetiae_contig1196.1672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
NKQTPSDSSTATTHICTRPESMSTHPPKTVGLERPGAGCRARGYLEPNFR
REKATLHETPEASQRARGVAIVCFRESRDQGTGTECWSWTGQRAQLHHGQ
LQPRLNRLRRSWFEGEGSGEGVGGARTVYLLLR
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mRNA from alignment at L-elsbetiae_contig1196:12981..13380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1196.1672.1 ID=mRNA_L-elsbetiae_contig1196.1672.1|Name=mRNA_L-elsbetiae_contig1196.1672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=400bp|location=Sequence derived from alignment at L-elsbetiae_contig1196:12981..13380+ (Laminarionema elsbetiae ELsaHSoW15)
AACAAACAGACGCCTTCGGATTCTTCCACTGCCACTACACATATATGCAC
AAGGCCGGAGAGCATGTCGACGCATCCGCCAAAAACAGTTGGGCTAGAAC
GGCCAGGAGCAGGTTGTAGGGCCCGGGGCTATTTAGAGCCAAACTTTCGG
CGTGAAAAGGCTACGCTTCATGAAACGCCAGAGGCATCCCAAAGGGCACG
AGGCGTCGCGATAGTATGTTTCAGGGAGAGTAGAGATCAAGGTACTGGGA
CTGAGTGTTGGAGCTGGACGGGGCAACGGGCCCAACTTCACCACGGGCAA
CTACAACCGAGGCTGAATAGACTGCGACGTTCATGGTTCGAAGGAGAAGG
TTCAGGCGAGGGTGTAGGTGGAGCACGCACGGTATATTTGCTGCTGAGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1196:12981..13380+

>mRNA_L-elsbetiae_contig1196.1672.1 ID=mRNA_L-elsbetiae_contig1196.1672.1|Name=mRNA_L-elsbetiae_contig1196.1672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig1196:12981..13380+ (Laminarionema elsbetiae ELsaHSoW15)
AACAAACAGACGCCTTCGGATTCTTCCACTGCCACTACACATATATGCAC
AAGGCCGGAGAGCATGTCGACGCATCCGCCAAAAACAGTTGGGCTAGAAC
GGCCAGGAGCAGGTTGTAGGGCCCGGGGCTATTTAGAGCCAAACTTTCGG
CGTGAAAAGGCTACGCTTCATGAAACGCCAGAGGCATCCCAAAGGGCACG
AGGCGTCGCGATAGTATGTTTCAGGGAGAGTAGAGATCAAGGTACTGGGA
CTGAGTGTTGGAGCTGGACGGGGCAACGGGCCCAACTTCACCACGGGCAA
CTACAACCGAGGCTGAATAGACTGCGACGTTCATGGTTCGAAGGAGAAGG
TTCAGGCGAGGGTGTAGGTGGAGCACGCACGGTATATTTGCTGCTGAGGA
ACAAACAGACGCCTTCGGATTCTTCCACTGCCACTACACATATATGCACA
AGGCCGGAGAGCATGTCGACGCATCCGCCAAAAACAGTTGGGCTAGAACG
GCCAGGAGCAGGTTGTAGGGCCCGGGGCTATTTAGAGCCAAACTTTCGGC
GTGAAAAGGCTACGCTTCATGAAACGCCAGAGGCATCCCAAAGGGCACGA
GGCGTCGCGATAGTATGTTTCAGGGAGAGTAGAGATCAAGGTACTGGGAC
TGAGTGTTGGAGCTGGACGGGGCAACGGGCCCAACTTCACCACGGGCAAC
TACAACCGAGGCTGAATAGACTGCGACGTTCATGGTTCGAAGGAGAAGGT
TCAGGCGAGGGTGTAGGTGGAGCACGCACGGTATATTTGCTGCTGAGG
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