mRNA_L-elsbetiae_contig1196.1670.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1196.1670.1
Unique NamemRNA_L-elsbetiae_contig1196.1670.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1196.1670.1 vs. uniprot
Match: D8LPW8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPW8_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 4.260e-83
Identity = 122/127 (96.06%), Postives = 126/127 (99.21%), Query Frame = 1
Query:    1 QVGPERYRAPECLFHPEQMGSECMGVHECLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPSIMDSKSL 381
            +VGPERYRAPECLFHPEQ+GSE MGVH+CLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGP+IMDSKSL
Sbjct:  249 RVGPERYRAPECLFHPEQLGSESMGVHDCLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPNIMDSKSL 375          
BLAST of mRNA_L-elsbetiae_contig1196.1670.1 vs. uniprot
Match: A0A1V9ZXS0_9STRA (Actin (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXS0_9STRA)

HSP 1 Score: 192 bits (488), Expect = 9.560e-58
Identity = 86/126 (68.25%), Postives = 111/126 (88.10%), Query Frame = 1
Query:    4 VGPERYRAPECLFHPEQMGSECMGVHECLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPSIMDSKSL 381
            +GPE++RAPE LF P+ +GSE  GV +CL+  I+R+DMD+R+TLF Q+VLSGGSTLFPGFGDRLL+EVRK+APK++KIRI+APP R++STW+GGSILASLATFK MW+T+AE+ EHG SI+  K+L
Sbjct:  266 LGPEKFRAPEILFRPDLIGSEYTGVQDCLVHAILRSDMDLRKTLFSQIVLSGGSTLFPGFGDRLLSEVRKKAPKDIKIRISAPPARQYSTWIGGSILASLATFKTMWITKAEYEEHGASIVHRKTL 391          
BLAST of mRNA_L-elsbetiae_contig1196.1670.1 vs. uniprot
Match: F0WRQ9_9STRA (Actinlike protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0WRQ9_9STRA)

HSP 1 Score: 191 bits (484), Expect = 4.400e-57
Identity = 85/126 (67.46%), Postives = 110/126 (87.30%), Query Frame = 1
Query:    4 VGPERYRAPECLFHPEQMGSECMGVHECLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPSIMDSKSL 381
            +G E++RAPE LF PE +GSEC GVHE L++ IM++DMD+R+TLF Q++LSGGSTLFPGFGDRLL EVRK APK++KIRI+APP R  STW+GGSILASLATFK+MW+T++E+ E+GPSI+  ++L
Sbjct:  272 IGAEKFRAPEVLFRPELIGSECRGVHESLVQAIMKSDMDLRKTLFSQIILSGGSTLFPGFGDRLLAEVRKLAPKDIKIRISAPPTRLHSTWIGGSILASLATFKNMWITKSEYEEYGPSILHRRAL 397          
BLAST of mRNA_L-elsbetiae_contig1196.1670.1 vs. uniprot
Match: A0A2D4CJD5_PYTIN (Actin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CJD5_PYTIN)

HSP 1 Score: 190 bits (482), Expect = 8.560e-57
Identity = 84/126 (66.67%), Postives = 111/126 (88.10%), Query Frame = 1
Query:    4 VGPERYRAPECLFHPEQMGSECMGVHECLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPSIMDSKSL 381
            +GPE++RAPE LF PE +GSE  GVHECL++ IM++DMD+R+TLF Q++LSGGST+FPGFGDRLL EVRK+APK++KIRI+APP R +STW+GGSILASLATFK+MW+T++E+ E+G SI+  K+ 
Sbjct:  271 IGPEKFRAPEVLFRPELIGSEGGGVHECLVQAIMKSDMDLRKTLFSQIILSGGSTMFPGFGDRLLAEVRKKAPKDIKIRISAPPTRLYSTWIGGSILASLATFKNMWITKSEYEEYGASILYRKAF 396          
BLAST of mRNA_L-elsbetiae_contig1196.1670.1 vs. uniprot
Match: A0A5D6YMY9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YMY9_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.840e-56
Identity = 84/126 (66.67%), Postives = 110/126 (87.30%), Query Frame = 1
Query:    4 VGPERYRAPECLFHPEQMGSECMGVHECLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPSIMDSKSL 381
            +G E++RAPE LF PE +GSE  GV +CL++ IM++DMD+R+TLF Q++LSGGSTLFPGFGDRLL EVRK+APK++KIRI+APP R +STW+GGSILASLATFK+MW+T++E+ EHG SI+  K+L
Sbjct:  260 IGAEKFRAPEVLFRPELIGSESGGVQDCLVQAIMKSDMDLRKTLFSQIILSGGSTLFPGFGDRLLAEVRKKAPKDIKIRISAPPTRLYSTWIGGSILASLATFKNMWITKSEYEEHGASILHRKAL 385          
BLAST of mRNA_L-elsbetiae_contig1196.1670.1 vs. uniprot
Match: A0A2C6KZ09_9APIC (Actin-related protein arp1 n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KZ09_9APIC)

HSP 1 Score: 182 bits (461), Expect = 2.040e-56
Identity = 83/127 (65.35%), Postives = 104/127 (81.89%), Query Frame = 1
Query:    1 QVGPERYRAPECLFHPEQMGSECMGVHECLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPSIMDSKSL 381
            Q+  ERYRAPE LFHP  +G E  G+HE L+  + R D+D+RRTL+ Q+VL+GGST+F GFGDRLLNEVRK APK++KIRI+APPERKFSTW+GGSILASLATFK MWV++ E+ E+G  I+  K+L
Sbjct:   44 QIASERYRAPEILFHPSLIGLEYAGMHELLVTSVSRCDLDLRRTLYSQIVLAGGSTMFHGFGDRLLNEVRKLAPKDIKIRISAPPERKFSTWIGGSILASLATFKKMWVSKQEYEEYGAGILHRKTL 170          
BLAST of mRNA_L-elsbetiae_contig1196.1670.1 vs. uniprot
Match: K3X404_GLOUD (Uncharacterized protein n=30 Tax=Oomycota TaxID=4762 RepID=K3X404_GLOUD)

HSP 1 Score: 189 bits (479), Expect = 2.720e-56
Identity = 84/126 (66.67%), Postives = 111/126 (88.10%), Query Frame = 1
Query:    4 VGPERYRAPECLFHPEQMGSECMGVHECLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPSIMDSKSL 381
            +G E++RAPE LF PE +GSE  GVHECL++ IM++DMD+R+TLF Q++LSGGST+FPGFGDRLL EVRK+APK++KIRI+APP R +STW+GGSILASLATFK+MW+T++E+ E+G SI+  K+L
Sbjct:  276 IGAEKFRAPEVLFRPEIIGSEGGGVHECLVQAIMKSDMDLRKTLFSQIILSGGSTMFPGFGDRLLAEVRKKAPKDIKIRISAPPTRLYSTWIGGSILASLATFKNMWITKSEYEEYGASILHRKAL 401          
BLAST of mRNA_L-elsbetiae_contig1196.1670.1 vs. uniprot
Match: A0A6G0WX95_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WX95_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.260e-55
Identity = 86/126 (68.25%), Postives = 112/126 (88.89%), Query Frame = 1
Query:    4 VGPERYRAPECLFHPEQMGSECMGVHECLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPSIMDSKSL 381
            +GPE++RAPE LF PE +GSE  GVH+CLL+ I+R D+D+R+TLF Q++LSGGSTLFPGFGDRLL+EVRK+APK++KIRI+APP R++STW+GGSILASLATFK MW+T+AE+ EHG SI+  K++
Sbjct: 1255 LGPEKFRAPEILFRPELIGSEHTGVHDCLLQAILRADLDLRKTLFSQIILSGGSTLFPGFGDRLLSEVRKRAPKDIKIRISAPPARQYSTWIGGSILASLATFKTMWITKAEYEEHGASIVHRKTI 1380          
BLAST of mRNA_L-elsbetiae_contig1196.1670.1 vs. uniprot
Match: A0A812SYX2_SYMMI (ACTR1A protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SYX2_SYMMI)

HSP 1 Score: 176 bits (447), Expect = 7.220e-55
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1
Query:    4 VGPERYRAPECLFHPEQMGSECMGVHECLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQA--PKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPSIMDSKSL 381
            +G E +RAPE LF P+ +GSE  GVH+CL+K +M++D+D+RRTL  Q+VLSGGSTLF GFGDRLLNEVRK    PK+ KIRI APPER +STW+GGSILASLATFK MWV++ +++E+G S++ ++SL
Sbjct:    1 MGAEAFRAPEILFQPDLIGSESRGVHDCLVKAVMKSDLDLRRTLLSQMVLSGGSTLFAGFGDRLLNEVRKHPLLPKDTKIRIAAPPERLYSTWIGGSILASLATFKSMWVSKQDYQENGASVLSARSL 128          
BLAST of mRNA_L-elsbetiae_contig1196.1670.1 vs. uniprot
Match: U6KLL3_EIMTE (Actin, putative n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6KLL3_EIMTE)

HSP 1 Score: 184 bits (466), Expect = 1.440e-54
Identity = 86/126 (68.25%), Postives = 103/126 (81.75%), Query Frame = 1
Query:    4 VGPERYRAPECLFHPEQMGSECMGVHECLLKGIMRTDMDMRRTLFGQVVLSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILASLATFKDMWVTRAEFREHGPSIMDSKSL 381
            VG ERYRAPE LFHP  +G E  GVHE ++  I R D+D+RRTLF Q+VL+GGST F GFGDRLLNE+RK APK++KIRI+APPERKFSTW+GGSILASL++FK MWV R E+ E GPSI+  K+L
Sbjct:  255 VGAERYRAPEILFHPSLVGLEYPGVHELVVNSISRADLDLRRTLFSQIVLAGGSTYFHGFGDRLLNEIRKAAPKDIKIRISAPPERKFSTWIGGSILASLSSFKKMWVPRQEYEECGPSILHRKTL 380          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1196.1670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPW8_ECTSI4.260e-8396.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9ZXS0_9STRA9.560e-5868.25Actin (Fragment) n=1 Tax=Thraustotheca clavata Tax... [more]
F0WRQ9_9STRA4.400e-5767.46Actinlike protein putative n=2 Tax=Albugo TaxID=65... [more]
A0A2D4CJD5_PYTIN8.560e-5766.67Actin-like protein n=1 Tax=Pythium insidiosum TaxI... [more]
A0A5D6YMY9_9STRA1.840e-5666.67Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2C6KZ09_9APIC2.040e-5665.35Actin-related protein arp1 n=1 Tax=Cystoisospora s... [more]
K3X404_GLOUD2.720e-5666.67Uncharacterized protein n=30 Tax=Oomycota TaxID=47... [more]
A0A6G0WX95_9STRA2.260e-5568.25Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A812SYX2_SYMMI7.220e-5563.28ACTR1A protein n=1 Tax=Symbiodinium microadriaticu... [more]
U6KLL3_EIMTE1.440e-5468.25Actin, putative n=1 Tax=Eimeria tenella TaxID=5802... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1196contigL-elsbetiae_contig1196:112..1997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue6.4e-66
Seed eggNOG ortholog2880.D8LPW8
Preferred nameACTR1A
KEGG koko:K16575
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000086,GO:0000278,GO:0001775,GO:0002177,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0003824,GO:0005198,GO:0005200,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005869,GO:0005875,GO:0005884,GO:0005938,GO:0006793,GO:0006796,GO:0006810,GO:0006887,GO:0006888,GO:0006928,GO:0006955,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007276,GO:0007283,GO:0007346,GO:0008088,GO:0008089,GO:0008090,GO:0008150,GO:0008152,GO:0008976,GO:0009987,GO:0010389,GO:0010564,GO:0010970,GO:0012505,GO:0015629,GO:0015630,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019882,GO:0019884,GO:0019886,GO:0019896,GO:0019953,GO:0022402,GO:0022406,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030135,GO:0030137,GO:0030141,GO:0030705,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032504,GO:0032940,GO:0032991,GO:0034643,GO:0034774,GO:0036230,GO:0042119,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0045055,GO:0045321,GO:0046903,GO:0046907,GO:0047497,GO:0048002,GO:0048193,GO:0048232,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0051704,GO:0051726,GO:0060205,GO:0060271,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0071944,GO:0072384,GO:0097708,GO:0097711,GO:0098930,GO:0099080,GO:0099081,GO:0099111,GO:0099503,GO:0099512,GO:0099513,GO:0099568,GO:0099738,GO:0101002,GO:0120031,GO:0120036,GO:0140056,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1904813
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0676@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Ec32 ortholog descriptionActin family
Ec32 orthologEc-15_001860.1
Exons3
Model size384
Cds size384
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1196.1670.1prot_L-elsbetiae_contig1196.1670.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1196 112..1997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815396.0161695-CDS-L-elsbetiae_contig1196:111..3151622815396.0161695-CDS-L-elsbetiae_contig1196:111..315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1196 112..315 +
1691682877.6321325-CDS-L-elsbetiae_contig1196:111..3151691682877.6321325-CDS-L-elsbetiae_contig1196:111..315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1196 112..315 +
1622815396.0347435-CDS-L-elsbetiae_contig1196:1240..13511622815396.0347435-CDS-L-elsbetiae_contig1196:1240..1351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1196 1241..1351 +
1691682877.6438372-CDS-L-elsbetiae_contig1196:1240..13511691682877.6438372-CDS-L-elsbetiae_contig1196:1240..1351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1196 1241..1351 +
1622815396.0493855-CDS-L-elsbetiae_contig1196:1928..19971622815396.0493855-CDS-L-elsbetiae_contig1196:1928..1997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1196 1929..1997 +
1691682877.6531343-CDS-L-elsbetiae_contig1196:1928..19971691682877.6531343-CDS-L-elsbetiae_contig1196:1928..1997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1196 1929..1997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1196.1670.1

>prot_L-elsbetiae_contig1196.1670.1 ID=prot_L-elsbetiae_contig1196.1670.1|Name=mRNA_L-elsbetiae_contig1196.1670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
QVGPERYRAPECLFHPEQMGSECMGVHECLLKGIMRTDMDMRRTLFGQVV
LSGGSTLFPGFGDRLLNEVRKQAPKNLKIRITAPPERKFSTWVGGSILAS
LATFKDMWVTRAEFREHGPSIMDSKSL*
back to top

mRNA from alignment at L-elsbetiae_contig1196:112..1997+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1196.1670.1 ID=mRNA_L-elsbetiae_contig1196.1670.1|Name=mRNA_L-elsbetiae_contig1196.1670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1886bp|location=Sequence derived from alignment at L-elsbetiae_contig1196:112..1997+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGGGCCAGAGCGCTACCGTGCGCCGGAGTGCCTGTTCCACCCGGA GCAGATGGGGTCCGAGTGCATGGGCGTGCACGAGTGCCTCCTCAAGGGCA TCATGCGCACGGACATGGACATGCGGCGGACGCTGTTCGGGCAAGTGGTG CTGTCGGGGGGCAGCACGCTCTTCCCGGGGTTCGGGGACCGGCTGCTCAA CGAGGTGGGTCGGTCGTGGTCGAGTTGTCATGGCTGTTGCTGCTACATGT TGCTGTTGTTTTTCACAAACGTTGCTGCTCTGCTGTTGTTGATGCTGTTG TTGATGTTGCTGCTGTTGTTTCTCACAAACGTTGCTGCTGCTGCTGCTGT TGCTGTTTTTGTTTCTCACAAACATCGCCTGTACGGTATCTGTATCTAAT CGGAATCGAAAAATCGGCAAACTCAGAATCTATTGTAGCACGATCACGGA GTCCCGGCCTGTGAACCTCAAAAACGCTGCAGCCATGAAAAGATCAGAAA AACAAGGGTTAAGGGATGGTGAAGGATTATTTGTGGGATTTGCCAGTCAC CCTGTTTCGCTTCCTGCTTGCGGGTCTGCGGTGCCTCCTAAGCTATATTG CCTTTGCGGTAGTTTCTCGTAAGGGGTGGGGGGAGGAGGAACAGAAGGAG ACAGGGAGGCAAGGAGGGAGGGGGTAGGGCACCATAGTTTCAGAGGTTCT CACGATTTTTTTCTTCGCTGGGGTAGAGAACGGAGATTTCTGTTTGCGTG CGGAAAAGGGTTCGTCTCCATTAATTTCGGCTGGATGTTTTTCGGGGGGG GGGGGGCTTACTGGCCTGCTACGACGCGGAACAATTGTTATTTTTACATG CATATTTTGCTGCGACTACTCAGTTAGCTCAGAACTTTTGAGAGAGACAT TGCCTACTCGATATGTAGTCAGATAGGTGGCTTGCTGTGTTAACGGTAAT ACCACACGAAGAAGCCCTCTTTGGAAGATTTGTAGTCCTTTTCAGCTTAA AAGACAAACAAACTATGTAGTGTCAGTTGTTCTGCTCGTGCTCTCTCGCA ACACCACGTCACAGGGCGCTGAACCTGCTCCGCGCCCTCTTTCCTGGAAC TCCATCACGTGAAAACGAAAACAAAACAGGTTCGGAAACAAGCGCCTAAA AATCTCAAAATCCGCATCACGGCGCCCCCTGAGCGCAAGTTCTCAACGTG GGTCGGAGGATCTATCCTGGCGTCCTTGGCCACGTTCAAGGTGCGATCTT GTGCGCGTCGTTGGTGGCACACACTGCTGTTCATGCTAAAACGTTAAATA TTCAACTTTCACGAATTTTTCCTCGCCATCATTACGGAAGATTCAAAAAT TCAGTGGCTTTTACAAAACGCGAATTGTTTTTGTTAATTTGGCAAACCGG AACAGCTACCAGTACCTCGGCGGGGGAGCAAGCGCGAATCTCGGGTTGGT TGGTTGGAGGAGTACATTGTAGCGTGTCACTGCCGCTCTTTACCGTAGGT GACATAAGATAAGACACCCCCTGGAGCGATATTCAAAGCTTGGTTACTCC GCAACGAATACGATTCTAACCACAAACGCCACATTTTCGGACAGCTCTCG ACGAGATCTTTCCAACGCCGCCCTTTTCGGGACTGACGCTCTGCTTGCGG GGGAGGAATCGAGCTTTAAAGATCGGTCCAGGGGCTGTCTTATCTTATGT CACCTACAGTAGAATAGCGTGTACTTTTATGGCAGCAACAGGCTGGAGTT CGAACCCGTTTCCTGCCCCTCTCCGCCCGCCCCTCTCTTTGTTGTTACTT TTAATCACCGTCAACAGGACATGTGGGTAACTCGAGCTGAGTTCAGAGAG CACGGACCGAGTATCATGGACAGCAAGTCCCTCTAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1196:112..1997+

>mRNA_L-elsbetiae_contig1196.1670.1 ID=mRNA_L-elsbetiae_contig1196.1670.1|Name=mRNA_L-elsbetiae_contig1196.1670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig1196:112..1997+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGGGCCAGAGCGCTACCGTGCGCCGGAGTGCCTGTTCCACCCGGA
GCAGATGGGGTCCGAGTGCATGGGCGTGCACGAGTGCCTCCTCAAGGGCA
TCATGCGCACGGACATGGACATGCGGCGGACGCTGTTCGGGCAAGTGGTG
CTGTCGGGGGGCAGCACGCTCTTCCCGGGGTTCGGGGACCGGCTGCTCAA
CGAGCAGGTGGGGCCAGAGCGCTACCGTGCGCCGGAGTGCCTGTTCCACC
CGGAGCAGATGGGGTCCGAGTGCATGGGCGTGCACGAGTGCCTCCTCAAG
GGCATCATGCGCACGGACATGGACATGCGGCGGACGCTGTTCGGGCAAGT
GGTGCTGTCGGGGGGCAGCACGCTCTTCCCGGGGTTCGGGGACCGGCTGC
TCAACGAGGTTCGGAAACAAGCGCCTAAAAATCTCAAAATCCGCATCACG
GCGCCCCCTGAGCGCAAGTTCTCAACGTGGGTCGGAGGATCTATCCTGGC
GTCCTTGGCCACGTTCAAGGTTCGGAAACAAGCGCCTAAAAATCTCAAAA
TCCGCATCACGGCGCCCCCTGAGCGCAAGTTCTCAACGTGGGTCGGAGGA
TCTATCCTGGCGTCCTTGGCCACGTTCAAGGACATGTGGGTAACTCGAGC
TGAGTTCAGAGAGCACGGACCGAGTATCATGGACAGCAAGTCCCTCTAGG
ACATGTGGGTAACTCGAGCTGAGTTCAGAGAGCACGGACCGAGTATCATG
GACAGCAAGTCCCTCTAG
back to top