mRNA_L-elsbetiae_contig11959.1669.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11959.1669.1
Unique NamemRNA_L-elsbetiae_contig11959.1669.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11959.1669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11959contigL-elsbetiae_contig11959:2048..3470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size875
Cds size873
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815395.931039-CDS-L-elsbetiae_contig11959:2047..27701622815395.931039-CDS-L-elsbetiae_contig11959:2047..2770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11959 2048..2770 +
1691682877.602948-CDS-L-elsbetiae_contig11959:2047..27701691682877.602948-CDS-L-elsbetiae_contig11959:2047..2770Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11959 2048..2770 +
1622815395.9405227-CDS-L-elsbetiae_contig11959:3320..34701622815395.9405227-CDS-L-elsbetiae_contig11959:3320..3470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11959 3321..3470 +
1691682877.6123967-CDS-L-elsbetiae_contig11959:3320..34701691682877.6123967-CDS-L-elsbetiae_contig11959:3320..3470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11959 3321..3470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11959.1669.1prot_L-elsbetiae_contig11959.1669.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11959 2048..3470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11959.1669.1

>prot_L-elsbetiae_contig11959.1669.1 ID=prot_L-elsbetiae_contig11959.1669.1|Name=mRNA_L-elsbetiae_contig11959.1669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=291bp
SQPRGESSAQQHSQGAAAAASARSALWENSSPLGSAAAAAAVMSGGDSDK
QQPQPWYPGASAGRPVLGSSSASSASSASATAAAFGMGSSMARRQARPPP
TALHNNNGGGIIDSGNSGGAGGRAREGGFPRPLLSPSSPSSSSYRGGGGS
GGLILPASSPAAAGGGVGAPQGGDLSKAWTDLSHSRQGAMASGGGGGSGG
GGRGGGAAAAGWDSSGATAARGTANTLKRPRPSSTQSEDFPRASQQPRGG
SGSGGGGGGGSGKSNVGRGIPFLGNFFGNSSASRRGSSESE
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mRNA from alignment at L-elsbetiae_contig11959:2048..3470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11959.1669.1 ID=mRNA_L-elsbetiae_contig11959.1669.1|Name=mRNA_L-elsbetiae_contig11959.1669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1423bp|location=Sequence derived from alignment at L-elsbetiae_contig11959:2048..3470+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCAGCCGCGCGGGGAGAGCTCGGCCCAGCAGCACTCGCAGGGCGCTGC
CGCCGCCGCCTCTGCACGCTCCGCGCTCTGGGAGAACAGCTCTCCGTTAG
GCTCTGCTGCTGCAGCTGCAGCGGTGATGTCTGGAGGGGATAGTGATAAG
CAGCAGCCCCAGCCTTGGTATCCCGGGGCGTCGGCGGGAAGACCCGTCTT
GGGGTCGTCGTCGGCGTCGTCGGCGTCATCGGCGTCCGCCACCGCCGCCG
CTTTCGGGATGGGGTCGTCGATGGCGCGACGGCAAGCGCGCCCCCCCCCC
ACCGCTCTGCACAACAACAACGGCGGCGGCATCATCGACAGCGGCAACAG
CGGGGGCGCCGGGGGTCGCGCCAGGGAGGGGGGGTTCCCGAGGCCGTTGC
TCTCGCCGTCATCTCCTTCCTCGTCGTCGTACAGGGGCGGCGGCGGTAGC
GGCGGCCTGATTCTACCCGCCTCCTCACCGGCAGCCGCGGGCGGAGGCGT
GGGGGCTCCGCAGGGAGGAGACCTCAGCAAGGCGTGGACGGACTTATCGC
ATTCACGGCAGGGTGCGATGGCGAGCGGCGGCGGCGGCGGTTCAGGAGGA
GGAGGACGAGGAGGAGGGGCTGCCGCCGCGGGTTGGGATTCGAGCGGTGC
GACCGCGGCGAGGGGTACGGCGAACACGCTCAAGCGTCCTAGGCCGAGCA
GCACCCAGTCCGAAGATTTTCCGGTGAGAAGTGGTTTTTGCTTTGTTTGT
TTGTTTGTTCGTTTGTTTTTTGCGGGTGGGGGGGTCTGGGTCGGAGTGGG
CAGGGTGGGAGAGAGATAGTGAGCATGGAAGCAAAACATAAGGTTGTCTG
CCGGCGCTACTCTGTAGGGGGGGGGGGCAGGGGATCTGGGGATCTGCGTG
CCTTTTTTTTAACGACTCTCCGTCCGCGTGGTGTTGGCGGGTAGGTCTTT
CGTTCTGGGATTTCCGGCTGGCGACGGCGATGCAGATGGGCGATGCAGAT
GTTGCCCTGCCGCCTGCATCGCGTAGCCGGCACGATGCCACTTTTGTAGT
CGAGATATGTAAGTAATGGTTCACACGATTACACCACAGCAGCAGCAGCA
GTAGCAGAGCAGCGGCAGCGGCAATAGCAGTGGCAGTGGCAGAGGCCGCA
CCGGGTTGGTATTCATTTTTCTGCGAGACATGGCTCCCGAGCCGCATCCG
CCGCGGCCCCCTTGCGATGATCATGCTGGCCCTTCTGCCCTGTCCTCCAT
CGTTAAACCCGCGCGCACGGCAGCGAGCATCTCAGCAACCGCGTGGCGGC
AGTGGCAGTGGCGGCGGCGGCGGCGGCGGCAGCGGCAAGAGTAACGTCGG
CCGCGGCATTCCATTTCTCGGGAATTTTTTCGGGAATTCTTCGGCTTCCC
GCCGCGGAAGCAGCGAGTCGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11959:2048..3470+

>mRNA_L-elsbetiae_contig11959.1669.1 ID=mRNA_L-elsbetiae_contig11959.1669.1|Name=mRNA_L-elsbetiae_contig11959.1669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1746bp|location=Sequence derived from alignment at L-elsbetiae_contig11959:2048..3470+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCAGCCGCGCGGGGAGAGCTCGGCCCAGCAGCACTCGCAGGGCGCTGC
CGCCGCCGCCTCTGCACGCTCCGCGCTCTGGGAGAACAGCTCTCCGTTAG
GCTCTGCTGCTGCAGCTGCAGCGGTGATGTCTGGAGGGGATAGTGATAAG
CAGCAGCCCCAGCCTTGGTATCCCGGGGCGTCGGCGGGAAGACCCGTCTT
GGGGTCGTCGTCGGCGTCGTCGGCGTCATCGGCGTCCGCCACCGCCGCCG
CTTTCGGGATGGGGTCGTCGATGGCGCGACGGCAAGCGCGCCCCCCCCCC
ACCGCTCTGCACAACAACAACGGCGGCGGCATCATCGACAGCGGCAACAG
CGGGGGCGCCGGGGGTCGCGCCAGGGAGGGGGGGTTCCCGAGGCCGTTGC
TCTCGCCGTCATCTCCTTCCTCGTCGTCGTACAGGGGCGGCGGCGGTAGC
GGCGGCCTGATTCTACCCGCCTCCTCACCGGCAGCCGCGGGCGGAGGCGT
GGGGGCTCCGCAGGGAGGAGACCTCAGCAAGGCGTGGACGGACTTATCGC
ATTCACGGCAGGGTGCGATGGCGAGCGGCGGCGGCGGCGGTTCAGGAGGA
GGAGGACGAGGAGGAGGGGCTGCCGCCGCGGGTTGGGATTCGAGCGGTGC
GACCGCGGCGAGGGGTACGGCGAACACGCTCAAGCGTCCTAGGCCGAGCA
GCACCCAGTCCGAAGATTTTCCGAGCCAGCCGCGCGGGGAGAGCTCGGCC
CAGCAGCACTCGCAGGGCGCTGCCGCCGCCGCCTCTGCACGCTCCGCGCT
CTGGGAGAACAGCTCTCCGTTAGGCTCTGCTGCTGCAGCTGCAGCGGTGA
TGTCTGGAGGGGATAGTGATAAGCAGCAGCCCCAGCCTTGGTATCCCGGG
GCGTCGGCGGGAAGACCCGTCTTGGGGTCGTCGTCGGCGTCGTCGGCGTC
ATCGGCGTCCGCCACCGCCGCCGCTTTCGGGATGGGGTCGTCGATGGCGC
GACGGCAAGCGCGCCCCCCCCCCACCGCTCTGCACAACAACAACGGCGGC
GGCATCATCGACAGCGGCAACAGCGGGGGCGCCGGGGGTCGCGCCAGGGA
GGGGGGGTTCCCGAGGCCGTTGCTCTCGCCGTCATCTCCTTCCTCGTCGT
CGTACAGGGGCGGCGGCGGTAGCGGCGGCCTGATTCTACCCGCCTCCTCA
CCGGCAGCCGCGGGCGGAGGCGTGGGGGCTCCGCAGGGAGGAGACCTCAG
CAAGGCGTGGACGGACTTATCGCATTCACGGCAGGGTGCGATGGCGAGCG
GCGGCGGCGGCGGTTCAGGAGGAGGAGGACGAGGAGGAGGGGCTGCCGCC
GCGGGTTGGGATTCGAGCGGTGCGACCGCGGCGAGGGGTACGGCGAACAC
GCTCAAGCGTCCTAGGCCGAGCAGCACCCAGTCCGAAGATTTTCCGCGAG
CATCTCAGCAACCGCGTGGCGGCAGTGGCAGTGGCGGCGGCGGCGGCGGC
GGCAGCGGCAAGAGTAACGTCGGCCGCGGCATTCCATTTCTCGGGAATTT
TTTCGGGAATTCTTCGGCTTCCCGCCGCGGAAGCAGCGAGTCGGAACGAG
CATCTCAGCAACCGCGTGGCGGCAGTGGCAGTGGCGGCGGCGGCGGCGGC
GGCAGCGGCAAGAGTAACGTCGGCCGCGGCATTCCATTTCTCGGGAATTT
TTTCGGGAATTCTTCGGCTTCCCGCCGCGGAAGCAGCGAGTCGGAA
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