mRNA_L-elsbetiae_contig11958.1668.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11958.1668.1
Unique NamemRNA_L-elsbetiae_contig11958.1668.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11958.1668.1 vs. uniprot
Match: A0A6H5J7F4_9PHAE (GPI mannosyltransferase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7F4_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.190e-41
Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = -2
Query:   52 TKPNAITTVVSVAVASRIATIALMVLANAVLPTHDAGGVHKFRPRTFPVPAGPAGIDGRDGGVLSAFTRWDAAWFLSIADSGYPSPSLSGGLGEEVDCGGTPRAWGGEEYE 384
            T+  A TTV+SVAVASR AT+ALMVL NAVLPTHDAGGVHKFRPRTFPVP+  A      GGV SAFTRWD+AWFLSIADSGYP P++     + +DC GT RAWGGEEYE
Sbjct:   12 TRSGATTTVISVAVASRAATVALMVLGNAVLPTHDAGGVHKFRPRTFPVPSAGAXXXXGPGGVFSAFTRWDSAWFLSIADSGYPYPTVGSDDDDGIDCRGTTRAWGGEEYE 122          
BLAST of mRNA_L-elsbetiae_contig11958.1668.1 vs. uniprot
Match: A0A4D9CW86_9STRA (GPI mannosyltransferase 2 (Fragment) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW86_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.260e-5
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = -2
Query:  130 RIATIALMVLANAVLPTHDAGGVHKFRPR-TFPVPAGPAGIDGRDGGVLSAFTRWDAAWFLSIADSGYPS 336
            R+A I   VL + + P H A  VH FRP  + PVP+           +L AFT+WDAA+FLS+A  GY S
Sbjct:   49 RVAMILYAVLMDVLFPDHQATDVHVFRPSPSSPVPS-----------LLLAFTKWDAAYFLSLAQEGYGS 107          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11958.1668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7F4_9PHAE1.190e-4171.17GPI mannosyltransferase 2 n=2 Tax=Ectocarpus TaxID... [more]
A0A4D9CW86_9STRA1.260e-544.29GPI mannosyltransferase 2 (Fragment) n=1 Tax=Nanno... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11958contigL-elsbetiae_contig11958:4021..4528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size508
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815395.8876245-CDS-L-elsbetiae_contig11958:4020..44311622815395.8876245-CDS-L-elsbetiae_contig11958:4020..4431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11958 4021..4431 +
1691682877.5689912-CDS-L-elsbetiae_contig11958:4020..44311691682877.5689912-CDS-L-elsbetiae_contig11958:4020..4431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11958 4021..4431 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815395.898757-UTR-L-elsbetiae_contig11958:4431..45281622815395.898757-UTR-L-elsbetiae_contig11958:4431..4528Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11958 4432..4528 +
1691682877.5884128-UTR-L-elsbetiae_contig11958:4431..45281691682877.5884128-UTR-L-elsbetiae_contig11958:4431..4528Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11958 4432..4528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11958.1668.1prot_L-elsbetiae_contig11958.1668.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11958 4021..4431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11958.1668.1

>prot_L-elsbetiae_contig11958.1668.1 ID=prot_L-elsbetiae_contig11958.1668.1|Name=mRNA_L-elsbetiae_contig11958.1668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
PLLLRSLVVWLSAKLVVLVFLATPRSGRSPAVNFLAKTAAQGRRRVAAVG
DAQEPRGVPSCEGRQDSAVAAVYTRRPSRHRKSSRSEFVHAARIVGGEDG
VREDHQGDSGDPGGYGDRDNRGDCVGFGPTPAGLRP*
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mRNA from alignment at L-elsbetiae_contig11958:4021..4528+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11958.1668.1 ID=mRNA_L-elsbetiae_contig11958.1668.1|Name=mRNA_L-elsbetiae_contig11958.1668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=508bp|location=Sequence derived from alignment at L-elsbetiae_contig11958:4021..4528+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTCTTGCTTCGTTCTCTCGTCGTCTGGCTCTCGGCGAAGCTGGTCGT GCTCGTATTCCTCGCCACCCCACGCTCTGGGCGTTCCCCCGCAGTCAACT TCCTCGCCAAGACCGCCGCTCAAGGAAGGAGAAGGGTAGCCGCTGTCGGC GATGCTCAGGAACCACGCGGCGTCCCATCGTGTGAAGGCCGACAGGACTC CGCCGTCGCGGCCGTCTATACCCGCCGGCCCAGCCGGCACCGGAAAAGTT CTCGGTCGGAATTTGTGCACGCCGCCCGCATCGTGGGTGGGGAGGACGGC GTTCGCGAGGACCATCAGGGCGATAGTGGCGATCCTGGAGGCTACGGCGA CAGAGACAACCGTGGTGATTGCGTTGGGTTTGGTCCCACCCCTGCCGGGT TGCGGCCGTGATGTAGGCATGTAAAAACCTCTCGGCGAAAACAAAAAAGT GTTCTCACTTCTTCCTCTCTGTGGATATACACCCGGTGTGACTGCTGTGC CCACACGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11958:4021..4528+

>mRNA_L-elsbetiae_contig11958.1668.1 ID=mRNA_L-elsbetiae_contig11958.1668.1|Name=mRNA_L-elsbetiae_contig11958.1668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig11958:4021..4528+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCTCTTGCTTCGTTCTCTCGTCGTCTGGCTCTCGGCGAAGCTGGTCGT
GCTCGTATTCCTCGCCACCCCACGCTCTGGGCGTTCCCCCGCAGTCAACT
TCCTCGCCAAGACCGCCGCTCAAGGAAGGAGAAGGGTAGCCGCTGTCGGC
GATGCTCAGGAACCACGCGGCGTCCCATCGTGTGAAGGCCGACAGGACTC
CGCCGTCGCGGCCGTCTATACCCGCCGGCCCAGCCGGCACCGGAAAAGTT
CTCGGTCGGAATTTGTGCACGCCGCCCGCATCGTGGGTGGGGAGGACGGC
GTTCGCGAGGACCATCAGGGCGATAGTGGCGATCCTGGAGGCTACGGCGA
CAGAGACAACCGTGGTGATTGCGTTGGGTTTGGTCCCACCCCTGCCGGGT
TGCGGCCGTGACCCCTCTTGCTTCGTTCTCTCGTCGTCTGGCTCTCGGCG
AAGCTGGTCGTGCTCGTATTCCTCGCCACCCCACGCTCTGGGCGTTCCCC
CGCAGTCAACTTCCTCGCCAAGACCGCCGCTCAAGGAAGGAGAAGGGTAG
CCGCTGTCGGCGATGCTCAGGAACCACGCGGCGTCCCATCGTGTGAAGGC
CGACAGGACTCCGCCGTCGCGGCCGTCTATACCCGCCGGCCCAGCCGGCA
CCGGAAAAGTTCTCGGTCGGAATTTGTGCACGCCGCCCGCATCGTGGGTG
GGGAGGACGGCGTTCGCGAGGACCATCAGGGCGATAGTGGCGATCCTGGA
GGCTACGGCGACAGAGACAACCGTGGTGATTGCGTTGGGTTTGGTCCCAC
CCCTGCCGGGTTGCGGCCGTGA
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