mRNA_L-elsbetiae_contig11958.1668.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig11958.1668.1 vs. uniprot
Match: A0A6H5J7F4_9PHAE (GPI mannosyltransferase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7F4_9PHAE) HSP 1 Score: 157 bits (397), Expect = 1.190e-41 Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = -2 Query: 52 TKPNAITTVVSVAVASRIATIALMVLANAVLPTHDAGGVHKFRPRTFPVPAGPAGIDGRDGGVLSAFTRWDAAWFLSIADSGYPSPSLSGGLGEEVDCGGTPRAWGGEEYE 384 T+ A TTV+SVAVASR AT+ALMVL NAVLPTHDAGGVHKFRPRTFPVP+ A GGV SAFTRWD+AWFLSIADSGYP P++ + +DC GT RAWGGEEYE Sbjct: 12 TRSGATTTVISVAVASRAATVALMVLGNAVLPTHDAGGVHKFRPRTFPVPSAGAXXXXGPGGVFSAFTRWDSAWFLSIADSGYPYPTVGSDDDDGIDCRGTTRAWGGEEYE 122
BLAST of mRNA_L-elsbetiae_contig11958.1668.1 vs. uniprot
Match: A0A4D9CW86_9STRA (GPI mannosyltransferase 2 (Fragment) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW86_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 1.260e-5 Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = -2 Query: 130 RIATIALMVLANAVLPTHDAGGVHKFRPR-TFPVPAGPAGIDGRDGGVLSAFTRWDAAWFLSIADSGYPS 336 R+A I VL + + P H A VH FRP + PVP+ +L AFT+WDAA+FLS+A GY S Sbjct: 49 RVAMILYAVLMDVLFPDHQATDVHVFRPSPSSPVPS-----------LLLAFTKWDAAYFLSLAQEGYGS 107 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11958.1668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11958.1668.1 >prot_L-elsbetiae_contig11958.1668.1 ID=prot_L-elsbetiae_contig11958.1668.1|Name=mRNA_L-elsbetiae_contig11958.1668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp PLLLRSLVVWLSAKLVVLVFLATPRSGRSPAVNFLAKTAAQGRRRVAAVGback to top mRNA from alignment at L-elsbetiae_contig11958:4021..4528+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig11958.1668.1 ID=mRNA_L-elsbetiae_contig11958.1668.1|Name=mRNA_L-elsbetiae_contig11958.1668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=508bp|location=Sequence derived from alignment at L-elsbetiae_contig11958:4021..4528+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig11958:4021..4528+ >mRNA_L-elsbetiae_contig11958.1668.1 ID=mRNA_L-elsbetiae_contig11958.1668.1|Name=mRNA_L-elsbetiae_contig11958.1668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig11958:4021..4528+ (Laminarionema elsbetiae ELsaHSoW15)back to top |