mRNA_L-elsbetiae_contig11955.1666.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11955.1666.1
Unique NamemRNA_L-elsbetiae_contig11955.1666.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11955.1666.1 vs. uniprot
Match: D7G2C3_ECTSI (Putative Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C3_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.520e-26
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 RCLEVFYEAYDTLEMSTYKNVAAWRERAETRPATAKGLLINSGAQDGEFKEYHS 162
            RCLE+FYEAYDTLEMSTY NVAAWRER E RPATAKGL+INSGAQ+G FKEYHS
Sbjct:  236 RCLEIFYEAYDTLEMSTYSNVAAWRERVEARPATAKGLIINSGAQNGAFKEYHS 289
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BLAST of mRNA_L-elsbetiae_contig11955.1666.1 vs. uniprot
Match: A0A835ZJ35_9STRA (Putative glutathione S-transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ35_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.480e-8
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 RCLEVFYEAYDTLEMSTYKNVAAWRERAETRPATAKGLLINSGAQDGE-FKEYHS 162
            +CL VFY+  + L +S Y+ V  W+E   +RPA AKG+ INS A++ + +KEYHS
Sbjct:  235 QCLSVFYKGDEPLGLSEYQEVMRWKENLLSRPAIAKGMRINSPAEENQQYKEYHS 289
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BLAST of mRNA_L-elsbetiae_contig11955.1666.1 vs. uniprot
Match: A0A2R5GYV1_9STRA (Glutathione S-transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GYV1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.310e-6
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    4 CLEVFYEAYDTLEMSTYKNVAAWRERAETRPATAKGLLINSGAQDGEFKEYHS 162
            CL  FY A +TLE+ +YKNV  W  R ++RPA   G+ IN G  D +++ Y S
Sbjct:  240 CLSQFYNADETLELDSYKNVQKWMARIKSRPAVKLGMQIN-GFGDSKYRNYSS 291
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11955.1666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2C3_ECTSI2.520e-2687.04Putative Glutathione S-transferase n=1 Tax=Ectocar... [more]
A0A835ZJ35_9STRA1.480e-847.27Putative glutathione S-transferase n=1 Tax=Tribone... [more]
A0A2R5GYV1_9STRA1.310e-645.28Glutathione S-transferase n=1 Tax=Hondaea fermenta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11955contigL-elsbetiae_contig11955:4541..4705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815395.7641017-CDS-L-elsbetiae_contig11955:4540..47051622815395.7641017-CDS-L-elsbetiae_contig11955:4540..4705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11955 4541..4705 -
1691682877.496582-CDS-L-elsbetiae_contig11955:4540..47051691682877.496582-CDS-L-elsbetiae_contig11955:4540..4705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11955 4541..4705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11955.1666.1prot_L-elsbetiae_contig11955.1666.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11955 4541..4705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11955.1666.1

>prot_L-elsbetiae_contig11955.1666.1 ID=prot_L-elsbetiae_contig11955.1666.1|Name=mRNA_L-elsbetiae_contig11955.1666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
RCLEVFYEAYDTLEMSTYKNVAAWRERAETRPATAKGLLINSGAQDGEFK
EYHS*
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mRNA from alignment at L-elsbetiae_contig11955:4541..4705-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11955.1666.1 ID=mRNA_L-elsbetiae_contig11955.1666.1|Name=mRNA_L-elsbetiae_contig11955.1666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig11955:4541..4705- (Laminarionema elsbetiae ELsaHSoW15)
AGGTGCTTGGAAGTGTTTTACGAGGCGTACGACACGCTGGAGATGTCCAC
CTACAAGAACGTTGCGGCCTGGCGCGAGAGAGCGGAGACCCGGCCGGCGA
CAGCTAAGGGGCTGCTCATCAACTCGGGCGCGCAAGACGGGGAGTTCAAG
GAGTACCACAGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11955:4541..4705-

>mRNA_L-elsbetiae_contig11955.1666.1 ID=mRNA_L-elsbetiae_contig11955.1666.1|Name=mRNA_L-elsbetiae_contig11955.1666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig11955:4541..4705- (Laminarionema elsbetiae ELsaHSoW15)
AGGTGCTTGGAAGTGTTTTACGAGGCGTACGACACGCTGGAGATGTCCAC
CTACAAGAACGTTGCGGCCTGGCGCGAGAGAGCGGAGACCCGGCCGGCGA
CAGCTAAGGGGCTGCTCATCAACTCGGGCGCGCAAGACGGGGAGTTCAAG
GAGTACCACAGCTAAAGGTGCTTGGAAGTGTTTTACGAGGCGTACGACAC
GCTGGAGATGTCCACCTACAAGAACGTTGCGGCCTGGCGCGAGAGAGCGG
AGACCCGGCCGGCGACAGCTAAGGGGCTGCTCATCAACTCGGGCGCGCAA
GACGGGGAGTTCAAGGAGTACCACAGCTAA
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