mRNA_L-elsbetiae_contig11949.1663.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11949.1663.1
Unique NamemRNA_L-elsbetiae_contig11949.1663.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11949.1663.1 vs. uniprot
Match: R6IML5_9PROT (Uncharacterized protein n=1 Tax=Azospirillum sp. CAG:260 TaxID=1262706 RepID=R6IML5_9PROT)

HSP 1 Score: 211 bits (536), Expect = 7.070e-68
Identity = 103/145 (71.03%), Postives = 116/145 (80.00%), Query Frame = 1
Query:    1 LSHLSVSTEPVSRLRHWCSSEYLRISPLHSEFHSPLSDSRLPVSKAVPRLSPGISPLT*KSAYVRFTPSNSEQR*PPSYYRGCWHEVSRGFFTGYRHYLHRRKSFTTLRPSSLTRHGWIRLAPIVQYSPLLPPVGVWAVSQSQCG 435
            LS LSV+ +P SRLRHWCS++YLRISPLH  FH PL +S   V  A+P+LS GISPL+  +AY  FTPSNSEQR PPSYYRGCWHEVSRGFF  YRH+ H RKSFT  +PSSLTRHGW+R+A I QYS LLPPVGVW VSQ QCG
Sbjct:    2 LSSLSVNIQPDSRLRHWCSTQYLRISPLHWVFHYPLCNSSHIVIMAIPKLSSGISPLSYITAYTPFTPSNSEQRLPPSYYRGCWHEVSRGFFRCYRHHRHTRKSFTIRKPSSLTRHGWVRVASIAQYSSLLPPVGVWTVSQFQCG 146          
BLAST of mRNA_L-elsbetiae_contig11949.1663.1 vs. uniprot
Match: H6SIC9_PARPM (Uncharacterized protein (Fragment) n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIC9_PARPM)

HSP 1 Score: 173 bits (439), Expect = 1.090e-53
Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = 1
Query:  127 VSKAVPRLSPGISPLT*KSAYVRFTPSNSEQR*PPSYYRGCWHEVSRGFFTGYRHYLHRRKSFTTLRPSSLTRHGWIRLAPIVQYSPLLPPVGVWAVSQSQCG 435
            VSKA P LSPG+SPLT  +AY  FTPS+SEQR PPSYYRGCWHEVSRGFF  YRH+LH RKSFTT RPSSLTRHG +R++PI QYSPLLPPVGVWAVSQSQCG
Sbjct:    2 VSKAFPGLSPGLSPLTDLTAYALFTPSDSEQRLPPSYYRGCWHEVSRGFFWCYRHHLHTRKSFTTRRPSSLTRHGCVRVSPIAQYSPLLPPVGVWAVSQSQCG 104          
BLAST of mRNA_L-elsbetiae_contig11949.1663.1 vs. uniprot
Match: A0A0V0H4B3_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H4B3_SOLCH)

HSP 1 Score: 154 bits (389), Expect = 1.640e-45
Identity = 86/146 (58.90%), Postives = 96/146 (65.75%), Query Frame = 1
Query:    1 LSHLSVSTEPVSRLRHWCSSEYLRISPLHSEFHSPLSDSRLPVSKAVPRLSPGISPLT*KSAYVRFTPSNSEQR*PPSYYRGCWHEVSRGFFTGYRHYLHRRKSF-TTLRPSSLTRHGWIRLAPIVQYSPLLPPVGVWAVSQSQCG 435
            LS +SV   PV RLR WCSS+YLRISPLH EF  PL  S   VS     LSP +   T  + Y  FTP+NS  R PP YYRGCWH VSRG F  YR     RK+  TT  PSS TR+  +RL+PI + SPLLPPVGVWAVSQSQCG
Sbjct:    1 LSSMSVRCSPVGRLRCWCSSQYLRISPLHWEFLLPLLPSSXSVSTPSMELSPTLXQQTXLTTYGLFTPNNSGXRLPPPYYRGCWHGVSRGLFLRYRQVSSLRKAXXTTQGPSSRTRYCSVRLSPIAENSPLLPPVGVWAVSQSQCG 146          
BLAST of mRNA_L-elsbetiae_contig11949.1663.1 vs. uniprot
Match: A0A0S6TJ15_9PROT (Uncharacterized protein n=1 Tax=Gluconobacter frateurii NBRC 103465 TaxID=1307834 RepID=A0A0S6TJ15_9PROT)

HSP 1 Score: 129 bits (323), Expect = 8.500e-36
Identity = 68/102 (66.67%), Postives = 74/102 (72.55%), Query Frame = 3
Query:  129 IKGSSEVEPRDFTPDLKVSLRALYAQ*FRTTLAPFVLPRLLARS*PGLLYRLPSLSSPAKELYNPKAFITHAAWLDQACAHCPIFPTAASRRSLGRVSVPVW 434
            +K SS+V+P DFT D    LRALYAQ FR TL P  +         GLL R+PS SSP+K LYNPK F THAA LDQA AHCPIFPTAASRRSLGRVSVPVW
Sbjct:    3 LKCSSQVKPGDFTSDCINRLRALYAQSFRATLRPLRITAAAGTKLAGLLLRVPSSSSPSKVLYNPKTFFTHAALLDQAFAHCPIFPTAASRRSLGRVSVPVW 104          
BLAST of mRNA_L-elsbetiae_contig11949.1663.1 vs. uniprot
Match: A0A6A5L825_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L825_LUPAL)

HSP 1 Score: 132 bits (333), Expect = 9.480e-36
Identity = 80/142 (56.34%), Postives = 85/142 (59.86%), Query Frame = 3
Query:    9 PQRQYRASEPPSPLVFFRISTNFTSTLGVPLTSLGLKTSSIKGSSEVEPRDFTPDLKVSLRALYAQ*FRTTLAPFVLPRLLARS*PGLLYRLPSLSSPAKELYNPKAFITHAAWLDQACAHCPIFPTAASRRSLGRVSVPVW 434
            P RQ  +  PPSP VFF ISTNFTSTLG+P +S  LK +SIK  S+                                       PGLL  LPS SS AKELYNPKAFITHAA LDQACAHCPIFPTAASRRSLGRVSVPVW
Sbjct:   14 PDRQCPSRWPPSPPVFFPISTNFTSTLGIPPSSPELKPASIKSYSQ---------------------------------------PGLLLTLPSSSSRAKELYNPKAFITHAALLDQACAHCPIFPTAASRRSLGRVSVPVW 116          
BLAST of mRNA_L-elsbetiae_contig11949.1663.1 vs. uniprot
Match: A0A6A5L4G5_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L4G5_LUPAL)

HSP 1 Score: 138 bits (348), Expect = 2.610e-35
Identity = 83/144 (57.64%), Postives = 88/144 (61.11%), Query Frame = 3
Query:    3 FAPQRQYRASEPPSPLVFFRISTNFTSTLGVPLTSLGLKTSSIKGSSEVEPRDFTPDLKVSLRALYAQ*FRTTLAPFVLPRLLARS*PGLLYRLPSLSSPAKELYNPKAFITHAAWLDQACAHCPIFPTAASRRSLGRVSVPVW 434
            FAPQRQ  +  PPSP VFF ISTNFTSTLG+P +S  LK +SIK  S+                                       PGLL  LPS SS AKELYNPKAFITHAA LDQACAHCPIFPTAASRRSLGRVSVPVW
Sbjct:  444 FAPQRQCPSRWPPSPPVFFPISTNFTSTLGIPPSSPELKPASIKSYSQ---------------------------------------PGLLLTLPSSSSRAKELYNPKAFITHAALLDQACAHCPIFPTAASRRSLGRVSVPVW 548          
BLAST of mRNA_L-elsbetiae_contig11949.1663.1 vs. uniprot
Match: A0A6A5L866_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L866_LUPAL)

HSP 1 Score: 138 bits (348), Expect = 3.650e-35
Identity = 83/144 (57.64%), Postives = 88/144 (61.11%), Query Frame = 3
Query:    3 FAPQRQYRASEPPSPLVFFRISTNFTSTLGVPLTSLGLKTSSIKGSSEVEPRDFTPDLKVSLRALYAQ*FRTTLAPFVLPRLLARS*PGLLYRLPSLSSPAKELYNPKAFITHAAWLDQACAHCPIFPTAASRRSLGRVSVPVW 434
            FAPQRQ  +  PPSP VFF ISTNFTSTLG+P +S  LK +SIK  S+                                       PGLL  LPS SS AKELYNPKAFITHAA LDQACAHCPIFPTAASRRSLGRVSVPVW
Sbjct:  421 FAPQRQCPSRWPPSPPVFFPISTNFTSTLGIPPSSPELKPASIKSYSQ---------------------------------------PGLLLTLPSSSSRAKELYNPKAFITHAALLDQACAHCPIFPTAASRRSLGRVSVPVW 525          
BLAST of mRNA_L-elsbetiae_contig11949.1663.1 vs. uniprot
Match: A0A6A5L6S4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L6S4_LUPAL)

HSP 1 Score: 138 bits (348), Expect = 3.690e-35
Identity = 83/144 (57.64%), Postives = 88/144 (61.11%), Query Frame = 3
Query:    3 FAPQRQYRASEPPSPLVFFRISTNFTSTLGVPLTSLGLKTSSIKGSSEVEPRDFTPDLKVSLRALYAQ*FRTTLAPFVLPRLLARS*PGLLYRLPSLSSPAKELYNPKAFITHAAWLDQACAHCPIFPTAASRRSLGRVSVPVW 434
            FAPQRQ  +  PPSP VFF ISTNFTSTLG+P +S  LK +SIK  S+                                       PGLL  LPS SS AKELYNPKAFITHAA LDQACAHCPIFPTAASRRSLGRVSVPVW
Sbjct:  421 FAPQRQCPSRWPPSPPVFFPISTNFTSTLGIPPSSPELKPASIKSYSQ---------------------------------------PGLLLTLPSSSSRAKELYNPKAFITHAALLDQACAHCPIFPTAASRRSLGRVSVPVW 525          
BLAST of mRNA_L-elsbetiae_contig11949.1663.1 vs. uniprot
Match: A0A6A5KZ04_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KZ04_LUPAL)

HSP 1 Score: 132 bits (333), Expect = 3.740e-34
Identity = 80/142 (56.34%), Postives = 85/142 (59.86%), Query Frame = 3
Query:    9 PQRQYRASEPPSPLVFFRISTNFTSTLGVPLTSLGLKTSSIKGSSEVEPRDFTPDLKVSLRALYAQ*FRTTLAPFVLPRLLARS*PGLLYRLPSLSSPAKELYNPKAFITHAAWLDQACAHCPIFPTAASRRSLGRVSVPVW 434
            P RQ  +  PPSP VFF ISTNFTSTLG+P +S  LK +SIK  S+                                       PGLL  LPS SS AKELYNPKAFITHAA LDQACAHCPIFPTAASRRSLGRVSVPVW
Sbjct:   14 PDRQCPSRWPPSPPVFFPISTNFTSTLGIPPSSPELKPASIKSYSQ---------------------------------------PGLLLTLPSSSSRAKELYNPKAFITHAALLDQACAHCPIFPTAASRRSLGRVSVPVW 116          
BLAST of mRNA_L-elsbetiae_contig11949.1663.1 vs. uniprot
Match: M1DBW2_SOLTU (30S ribosomal protein S12, chloroplastic n=3 Tax=Pentapetalae TaxID=1437201 RepID=M1DBW2_SOLTU)

HSP 1 Score: 126 bits (317), Expect = 2.110e-32
Identity = 80/144 (55.56%), Postives = 90/144 (62.50%), Query Frame = 3
Query:    3 FAPQRQYRASEPPSPLVFFRISTNFTSTLGVPLTSLGLKTSSIKGSSEVEPRDFTPDLKVSLRALYAQ*FRTTLAPFVLPRLLARS*PGLLYRLPSLSSPAKELYNPKAFITHAAWLDQACAHCPIFPTAASRRSLGRVSVPVW 434
            F  Q Q R S   SPLVFF IST+FT+   +P     L+  S    S VEP D T DLK  L+ LYAQ FR TLA  VLPRLLA++           SSP KE+++P AF  HAA L QA AHC  FPTAASRRSLGRVSVPVW
Sbjct:  113 FVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTVLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRLLAQN-------TVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVW 249          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11949.1663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R6IML5_9PROT7.070e-6871.03Uncharacterized protein n=1 Tax=Azospirillum sp. C... [more]
H6SIC9_PARPM1.090e-5380.58Uncharacterized protein (Fragment) n=1 Tax=Pararho... [more]
A0A0V0H4B3_SOLCH1.640e-4558.90Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A0S6TJ15_9PROT8.500e-3666.67Uncharacterized protein n=1 Tax=Gluconobacter frat... [more]
A0A6A5L825_LUPAL9.480e-3656.34Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L4G5_LUPAL2.610e-3557.64Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L866_LUPAL3.650e-3557.64Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L6S4_LUPAL3.690e-3557.64Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5KZ04_LUPAL3.740e-3456.34Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
M1DBW2_SOLTU2.110e-3255.5630S ribosomal protein S12, chloroplastic n=3 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11949contigL-elsbetiae_contig11949:4613..5047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.9
Seed ortholog evalue2.8e-08
Seed eggNOG ortholog1125701.HMPREF1221_00764
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2DPM9@1,332MQ@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815395.3102639-CDS-L-elsbetiae_contig11949:4612..47891622815395.3102639-CDS-L-elsbetiae_contig11949:4612..4789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11949 4613..4789 +
1691682877.1473358-CDS-L-elsbetiae_contig11949:4612..47891691682877.1473358-CDS-L-elsbetiae_contig11949:4612..4789Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11949 4613..4789 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815395.3217247-UTR-L-elsbetiae_contig11949:4789..50471622815395.3217247-UTR-L-elsbetiae_contig11949:4789..5047Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11949 4790..5047 +
1691682877.1595438-UTR-L-elsbetiae_contig11949:4789..50471691682877.1595438-UTR-L-elsbetiae_contig11949:4789..5047Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11949 4790..5047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11949.1663.1prot_L-elsbetiae_contig11949.1663.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11949 4613..4789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11949.1663.1

>prot_L-elsbetiae_contig11949.1663.1 ID=prot_L-elsbetiae_contig11949.1663.1|Name=mRNA_L-elsbetiae_contig11949.1663.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
LSHLSVSTEPVSRLRHWCSSEYLRISPLHSEFHSPLSDSRLPVSKAVPRL
SPGISPLT*
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mRNA from alignment at L-elsbetiae_contig11949:4613..5047+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11949.1663.1 ID=mRNA_L-elsbetiae_contig11949.1663.1|Name=mRNA_L-elsbetiae_contig11949.1663.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=435bp|location=Sequence derived from alignment at L-elsbetiae_contig11949:4613..5047+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTCGCACCTCAGCGTCAGTACCGAGCCAGTGAGCCGCCTTCGCCACTG GTGTTCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAGTTCCACT CACCTCTCTCGGACTCAAGACTTCCAGTATCAAAGGCAGTTCCGAGGTTG AGCCCCGGGATTTCACCCCTGACTTAAAAGTCAGCCTACGTGCGCTTTAC GCCCAGTAATTCCGAACAACGCTAGCCCCCTTCGTATTACCGCGGCTGCT GGCACGAAGTTAGCCGGGGCTTCTTTACCGGTTACCGTCATTATCTTCAC CGGCGAAAGAGCTTTACAACCCTAAGGCCTTCATCACTCACGCGGCATGG CTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCG TAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11949:4613..5047+

>mRNA_L-elsbetiae_contig11949.1663.1 ID=mRNA_L-elsbetiae_contig11949.1663.1|Name=mRNA_L-elsbetiae_contig11949.1663.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig11949:4613..5047+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTCGCACCTCAGCGTCAGTACCGAGCCAGTGAGCCGCCTTCGCCACTG
GTGTTCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAGTTCCACT
CACCTCTCTCGGACTCAAGACTTCCAGTATCAAAGGCAGTTCCGAGGTTG
AGCCCCGGGATTTCACCCCTGACTTAACTTTCGCACCTCAGCGTCAGTAC
CGAGCCAGTGAGCCGCCTTCGCCACTGGTGTTCTTCCGAATATCTACGAA
TTTCACCTCTACACTCGGAGTTCCACTCACCTCTCTCGGACTCAAGACTT
CCAGTATCAAAGGCAGTTCCGAGGTTGAGCCCCGGGATTTCACCCCTGAC
TTAA
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