mRNA_L-elsbetiae_contig11949.1661.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11949.1661.1
Unique NamemRNA_L-elsbetiae_contig11949.1661.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11949.1661.1 vs. uniprot
Match: H6SIA9_PARPM (Uncharacterized protein (Fragment) n=2 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIA9_PARPM)

HSP 1 Score: 191 bits (486), Expect = 1.370e-60
Identity = 104/139 (74.82%), Postives = 112/139 (80.58%), Query Frame = 1
Query:    1 AHHRAPPLPFGRRPPQSNYPPHTVPDVV-APRLDIHDDKGGISRVAPQELALLLRRLPPILHM-------SCSKGARGLSV*PQEPRIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSE 393
            AHHRAPPL F RRPPQSNYPP  VPD    PRLDI   KGGISR+AP++LA  L+ LPPILH+       SCSKG+ GLSV P E RIFT NSISLS CWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGF+S+
Sbjct:    1 AHHRAPPLLFRRRPPQSNYPPRRVPDPDHGPRLDIRRRKGGISRMAPRKLAPSLQSLPPILHIHRLMPLRSCSKGSWGLSVWPWELRIFTENSISLSWCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFDSK 139          
BLAST of mRNA_L-elsbetiae_contig11949.1661.1 vs. uniprot
Match: A0A0H2Z536_ECOK1 (Uncharacterized protein n=1 Tax=Escherichia coli O1:K1 / APEC TaxID=405955 RepID=A0A0H2Z536_ECOK1)

HSP 1 Score: 162 bits (409), Expect = 7.630e-48
Identity = 92/137 (67.15%), Postives = 100/137 (72.99%), Query Frame = 1
Query:   10 RAPPLPFGRRPPQSNYPPHTV--PDVVAPRLDIHDDKGGISRVAPQELALLLRRLPPILHM-------SCSKGARGLSV*PQEPRIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSE 393
            RAPPL F RRPPQSNYPP TV  P +  P L+    KGGISR AP  LA  L+ LPPILH+       S SKG+RGLSV P+   IFT +SISLSL WRQ G  YAIRAGRNLPDKEFRYLRTVIVTAAVYRGF+ E
Sbjct:   72 RAPPLLFRRRPPQSNYPPDTVRKPGITGPTLEHQTLKGGISRSAPCRLASTLQSLPPILHIKAQCSVSSYSKGSRGLSVLPRVHCIFTASSISLSLGWRQPGHHYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFDQE 208          
BLAST of mRNA_L-elsbetiae_contig11949.1661.1 vs. uniprot
Match: A0A182EY77_ONCOC (Uncharacterized protein n=2 Tax=Onchocerca ochengi TaxID=42157 RepID=A0A182EY77_ONCOC)

HSP 1 Score: 159 bits (402), Expect = 1.040e-46
Identity = 93/137 (67.88%), Postives = 101/137 (73.72%), Query Frame = 1
Query:   10 RAPPLPFGRRPPQSNYPPHTV--PDVVAPRLDIHDDKGGISRVAPQELALLLRRLPPILHM-------SCSKGARGLSV*PQEPRIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSE 393
            RAPPL F RRPPQSNYPP TV  PD   P L+    KGGISR+AP+ LA  L+ LPPILH+       S SKG+RGLSV P+   IFT  SISLSL WRQ G  YAIRAGRNLPDKEFRYLRTVIVTAAVYRGF+ E
Sbjct:   79 RAPPLLFRRRPPQSNYPPDTVRNPDY-GPTLEHQPLKGGISRMAPRRLASTLQSLPPILHIKDQCSVSSYSKGSRGLSVLPRVHCIFTAISISLSLGWRQPGHHYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFDQE 214          
BLAST of mRNA_L-elsbetiae_contig11949.1661.1 vs. uniprot
Match: B2PU91_PROST (Uncharacterized protein n=2 Tax=Providencia TaxID=586 RepID=B2PU91_PROST)

HSP 1 Score: 158 bits (399), Expect = 1.090e-46
Identity = 93/137 (67.88%), Postives = 101/137 (73.72%), Query Frame = 1
Query:   10 RAPPLPFGRRPPQSNYPPHTV--PDVVAPRLDIHDDKGGISRVAPQELALLLRRLPPILHM-------SCSKGARGLSV*PQEPRIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSE 393
            RAPPL FGRRPPQSNYPP TV  PD  A  L+    KGGISR+AP  LA  L+ LPPILH+       S SKG+RGLSV P+   IFT +SISLSL WRQ G  YAIRAGRNLPDKEFRYLRTVIVTAAVY GF+ E
Sbjct:   45 RAPPLRFGRRPPQSNYPPDTVRTPDYGA-TLEHQTLKGGISRLAPCRLASTLQSLPPILHIKAQCSVSSYSKGSRGLSVLPRVHCIFTASSISLSLGWRQPGHHYAIRAGRNLPDKEFRYLRTVIVTAAVYWGFDQE 180          
BLAST of mRNA_L-elsbetiae_contig11949.1661.1 vs. uniprot
Match: A0A8D8MY37_CULPI (Uncharacterized protein ORF91 n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8MY37_CULPI)

HSP 1 Score: 154 bits (390), Expect = 3.190e-45
Identity = 93/140 (66.43%), Postives = 101/140 (72.14%), Query Frame = 1
Query:    1 AHHRAPPLPFGRRPPQSNYPPHTV--PDVVAPRLDIHDDKGGISRVAPQELALLLRRLPPILHM-------SCSKGARGLSV*PQEPRIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSE 393
            A+ R PPL F RRPPQSNYPP TV  PD  +  L+    KGGISR AP  LA  L+ LPPILH+       S SKG+RGLSV P+   IFT +SISLSL WRQ G  YAIRAGRNLPDKEFRYLRTVIVTAAVY GFNSE
Sbjct:   14 AYLRTPPLLFRRRPPQSNYPPDTVRNPDYGS-TLEHQTLKGGISRSAPCRLASTLQSLPPILHIKAQCSVSSYSKGSRGLSVLPRVHCIFTASSISLSLGWRQPGHHYAIRAGRNLPDKEFRYLRTVIVTAAVYWGFNSE 152          
BLAST of mRNA_L-elsbetiae_contig11949.1661.1 vs. uniprot
Match: H6SIE1_PARPM (Putative glycosyl transferase (Glycosyl transferase family 2) n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIE1_PARPM)

HSP 1 Score: 155 bits (393), Expect = 6.580e-45
Identity = 85/116 (73.28%), Postives = 93/116 (80.17%), Query Frame = 1
Query:   70 VPDVV-APRLDIHDDKGGISRVAPQELALLLRRLPPILHM-------SCSKGARGLSV*PQEPRIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSE 393
            VPD    PRLDI   KGGISR+AP++LA  L+ LPPILH+       SCSKG+ GLSV P E RIFT NSISLS CWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGF+S+
Sbjct:  143 VPDPDHGPRLDIRRRKGGISRMAPRKLAPSLQSLPPILHIHRLMPLRSCSKGSWGLSVWPWELRIFTENSISLSWCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFDSK 258          
BLAST of mRNA_L-elsbetiae_contig11949.1661.1 vs. uniprot
Match: A0A0H2YW97_ECOK1 (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A0H2YW97_ECOK1)

HSP 1 Score: 134 bits (337), Expect = 2.530e-37
Identity = 85/138 (61.59%), Postives = 93/138 (67.39%), Query Frame = 1
Query:   10 RAPPLPFGRR-PPQSNYPPHTV--PDVVAPRLDIHDDKGGISRVAPQELALLLRRLPPILHM-------SCSKGARGLSV*PQEPRIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSE 393
            RAPPL F     P    PP TV  PD  +  L+    KGGISR AP  LA  L+ LPPILH+       S SKG+RGLSV P+   IFT +SISLSL WRQ G  YAIRAGRNLPDKEFRYLRTVIVTAAVYRGF+ E
Sbjct:   47 RAPPLLFXEENAPVKTTPPDTVRNPDYGS-TLEHQTLKGGISRSAPCRLASTLQSLPPILHIKAQCSVSSYSKGSRGLSVLPRVHCIFTASSISLSLGWRQPGHHYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFDQE 183          
BLAST of mRNA_L-elsbetiae_contig11949.1661.1 vs. uniprot
Match: A0A8D8FDL7_CULPI (Uncharacterized protein ORF91 (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8FDL7_CULPI)

HSP 1 Score: 130 bits (327), Expect = 1.180e-36
Identity = 79/122 (64.75%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   34 RRPPQSNYPPHTV--PDVVAPRLDIHDDKGGISRVAPQELALLLRRLPPILHM-------SCSKGARGLSV*PQEPRIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAV 372
            RRPPQSNYPP TV  PD  +  L+    KGGISR AP  LA  L+ LPPILH+       S SKG+RGLSV P+   IFT +SISLSL WRQ G  YAIRAGRNLPDKEFRYLR VIVT AV
Sbjct:    1 RRPPQSNYPPDTVRNPDYGS-TLEHQTLKGGISRSAPCRLASTLQSLPPILHIKAQCSVSSYSKGSRGLSVLPRVHCIFTASSISLSLGWRQPGHHYAIRAGRNLPDKEFRYLRMVIVTTAV 121          
BLAST of mRNA_L-elsbetiae_contig11949.1661.1 vs. uniprot
Match: A4EB58_COLAA (Uncharacterized protein n=1 Tax=Collinsella aerofaciens (strain ATCC 25986 / DSM 3979 / JCM 10188 / KCTC 3647 / NCTC 11838 / VPI 1003) TaxID=411903 RepID=A4EB58_COLAA)

HSP 1 Score: 131 bits (329), Expect = 8.190e-36
Identity = 82/135 (60.74%), Postives = 91/135 (67.41%), Query Frame = 1
Query:   10 RAPPLPFGRRPPQSNYPPHTVPDVV-APRLDIHDDKGGISRVAPQELALLLRRLPPILHM-------SCSKGARGLSV*PQEPRIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFNS 390
            RAPPLPF RRPPQSN PP TVP+ V    L     +G I R AP+ LA   R L PIL+        SCS+G+RGLSV P+  RIFT ++IS     RQR SR A RAGRNLPDKEFRYLRTVIVTAAVYRG  S
Sbjct:   72 RAPPLPFRRRPPQSNCPPGTVPEPVDGLGLGRRSREGSIPRAAPRGLAPPDRCLLPILYTRDQRPMPSCSEGSRGLSVLPRVSRIFTTSAISPGPWSRQRPSRCAFRAGRNLPDKEFRYLRTVIVTAAVYRGLAS 206          
BLAST of mRNA_L-elsbetiae_contig11949.1661.1 vs. uniprot
Match: A0A0C9MM56_9FUNG (Hydrolase (Fragment) n=1 Tax=Mucor ambiguus TaxID=91626 RepID=A0A0C9MM56_9FUNG)

HSP 1 Score: 130 bits (327), Expect = 3.010e-35
Identity = 78/129 (60.47%), Postives = 86/129 (66.67%), Query Frame = 1
Query:   31 GRRPPQSNYPPHTVP-DVVAPRLDIHDDKGGISRVAPQELALLLRRLPPILHMS-------CSKGARGLSV*PQEPRIFTGNSISLSLCWRQRGSRYAIRAGRNLPDKEFRYLRTVIVTAAVYRGFNSE 393
            GRRPPQSN PP TVP      RL+   D+GGI    P +LAL  +RLPPIL+ S       CSK   GLSV  +   IFTG  IS  L  RQR SRYAIRAG+NLPDKEFRYLRTVIVTAAVY GF S+
Sbjct:  105 GRRPPQSNCPPDTVPIPDYGTRLEPRYDQGGIPTAPPPKLALRFQRLPPILYRSYPNPISSCSKAPWGLSVLSRVTCIFTGIKISPDLSLRQRPSRYAIRAGQNLPDKEFRYLRTVIVTAAVYWGFGSQ 233          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11949.1661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H6SIA9_PARPM1.370e-6074.82Uncharacterized protein (Fragment) n=2 Tax=Pararho... [more]
A0A0H2Z536_ECOK17.630e-4867.15Uncharacterized protein n=1 Tax=Escherichia coli O... [more]
A0A182EY77_ONCOC1.040e-4667.88Uncharacterized protein n=2 Tax=Onchocerca ochengi... [more]
B2PU91_PROST1.090e-4667.88Uncharacterized protein n=2 Tax=Providencia TaxID=... [more]
A0A8D8MY37_CULPI3.190e-4566.43Uncharacterized protein ORF91 n=1 Tax=Culex pipien... [more]
H6SIE1_PARPM6.580e-4573.28Putative glycosyl transferase (Glycosyl transferas... [more]
A0A0H2YW97_ECOK12.530e-3761.59Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A8D8FDL7_CULPI1.180e-3664.75Uncharacterized protein ORF91 (Fragment) n=1 Tax=C... [more]
A4EB58_COLAA8.190e-3660.74Uncharacterized protein n=1 Tax=Collinsella aerofa... [more]
A0A0C9MM56_9FUNG3.010e-3560.47Hydrolase (Fragment) n=1 Tax=Mucor ambiguus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11949contigL-elsbetiae_contig11949:882..1295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size393
Cds size162
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11949.1661.1prot_L-elsbetiae_contig11949.1661.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11949 985..1167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815395.1269782-UTR-L-elsbetiae_contig11949:881..9841622815395.1269782-UTR-L-elsbetiae_contig11949:881..984Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11949 882..984 +
1691682877.0503073-UTR-L-elsbetiae_contig11949:881..9841691682877.0503073-UTR-L-elsbetiae_contig11949:881..984Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11949 882..984 +
1622815395.2000206-UTR-L-elsbetiae_contig11949:1167..12951622815395.2000206-UTR-L-elsbetiae_contig11949:1167..1295Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11949 1168..1295 +
1691682877.0861728-UTR-L-elsbetiae_contig11949:1167..12951691682877.0861728-UTR-L-elsbetiae_contig11949:1167..1295Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11949 1168..1295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815395.1407166-CDS-L-elsbetiae_contig11949:984..10691622815395.1407166-CDS-L-elsbetiae_contig11949:984..1069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11949 985..1069 +
1691682877.069742-CDS-L-elsbetiae_contig11949:984..10691691682877.069742-CDS-L-elsbetiae_contig11949:984..1069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11949 985..1069 +
1622815395.1887722-CDS-L-elsbetiae_contig11949:1090..11671622815395.1887722-CDS-L-elsbetiae_contig11949:1090..1167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11949 1091..1167 +
1691682877.0779493-CDS-L-elsbetiae_contig11949:1090..11671691682877.0779493-CDS-L-elsbetiae_contig11949:1090..1167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11949 1091..1167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11949.1661.1

>prot_L-elsbetiae_contig11949.1661.1 ID=prot_L-elsbetiae_contig11949.1661.1|Name=mRNA_L-elsbetiae_contig11949.1661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
MTTRVVFQGWLHKSWRSCFDAYHLSYTCPVVKVHGVFPSDRRNPASSRGI
QFH*
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mRNA from alignment at L-elsbetiae_contig11949:882..1295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11949.1661.1 ID=mRNA_L-elsbetiae_contig11949.1661.1|Name=mRNA_L-elsbetiae_contig11949.1661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig11949:882..1295+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCACCATCGCGCGCCTCCGTTACCATTTGGGAGGCGACCGCCCCAGTC AAACTACCCGCCACACACTGTCCCGGACGTTGTTGCGCCGCGGTTAGACA TCCATGACGACAAGGGTGGTATTTCAAGGGTGGCTCCACAAGAGCTGGCG CTCCTGCTTCGACGCCTACCACCTATCCTACACATGTCGTGACGAATGCC AGTGTGAAGCTGTAGTAAAGGTGCACGGGGTCTTTCCGTCTGACCGCAGG AACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGTCTATGCTGGAGA CAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGG GCTTCAATTCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11949:882..1295+

>mRNA_L-elsbetiae_contig11949.1661.1 ID=mRNA_L-elsbetiae_contig11949.1661.1|Name=mRNA_L-elsbetiae_contig11949.1661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig11949:882..1295+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGACAAGGGTGGTATTTCAAGGGTGGCTCCACAAGAGCTGGCGCTC
CTGCTTCGACGCCTACCACCTATCCTACACATGTCATGACGACAAGGGTG
GTATTTCAAGGGTGGCTCCACAAGAGCTGGCGCTCCTGCTTCGACGCCTA
CCACCTATCCTACACATGTCCTGTAGTAAAGGTGCACGGGGTCTTTCCGT
CTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTGACTG
TAGTAAAGGTGCACGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCT
TCACGGGGAATTCAATTTCACTGA
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