mRNA_L-elsbetiae_contig1194.1656.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1194.1656.1 vs. uniprot
Match: D7FYJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ5_ECTSI) HSP 1 Score: 397 bits (1019), Expect = 3.220e-119 Identity = 413/950 (43.47%), Postives = 466/950 (49.05%), Query Frame = 1 Query: 121 GWRTSPTENSPARSQLSSNS------GFSLKSSNTATKSREQSPARL---AADATGXXXXXXXXXXVAVSNRKMLKIGANVRFRGDVMECNTVVLYGRLQGFVETRQLIIKEGAQFIGDAKVEEADVSGSLEGSLESSGKVSIRSTGLVSGNVIYKKMSMEEGGELEGAFECSNRGSGRRRSKEGMAAXXXXXXVGGLYWNNAASDEA----------SDRGRPALVAGQEPRGRNPPRPQQIPPHRLNEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAT------------ASFAPAGESGSAEVVYAIPPPANSDSRASAHVRTFSPLR-SGGLQVQSLGGEASEVFSAEAVTPTAGPPSASELRGGGRTLLSVGVERGSVEGGSGGGGS----------------TSVAARVGTWPPTSPSPVGSA-WQRRTENAVSAPAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRPLEXXXXXXXXXXXXXXXXXXXXXXXXXXXNGRSPSXXXXXXXXXXXXXXXXXXXXXXKVGDSGY--ESARDGEEAAGNEEEGGDASQGTAGPMKACESGSCTLEACWGDPRFRPRYCARHKKQGNKLMDPVEQEEGDKAASPEGLSPPRGALPSPDDPPAAAIDPSGVAASTSKAQRFEV-NGRGGDGVGGNEIESDGLEDXXXXXXXXXXXXXXXXXXXXXXGAVGGRLVGAANGGSAMGRTGEGXXXXXXXX---FG---PLPVVKAEVFGN----GRGNNDVRNNDDGDGVDSLAEATSLRPSRGSGDMTAYADAEDAGDVQARLATYERLSSSGGKAGKIQVPSLPKPGAQKPMKRASVNNIADFYGGXXXXXXXXESAFNMDAYSKGVLLSQAAEVGKHFEDGKLRPQASQERDQQKLAHLMRVGKLGGRISALRGKSVPTASGKRR 2784 G + SP E+SP RSQLS+NS SL+S TA KSREQSPAR +AD G VAVS++KMLKIGANVRFRGDVMECNTVVL GRLQGFVET+++ IKEG FIGDAKVEEADV GSL+GSLESS KVSIRSTG VSGNVIYKKM+ME+GGELEG FECSNR GR R++EG A VGGL + A S G+ + + Q +G E XXXXXXXXXXXXXX A+ A+ P G + I P + + S VR SPLR + GLQVQ LG EA E+F EAVTP E G L S R S G TSVAARVGTWPP SP P + WQRRTEN + PAP+XXX L+ +P VG G E D E+A EE D++ +GP+KACE CTLEACWGDPRFRPRYCARHKKQGNKLM PVE EEGDK+A+ SPP LPSP P D A QR E NG XXXX XXXXXXXXXXXXXX XXXXXXXX FG LPVV+AE+ GN G N D D+ + V D DVQAR+A Y RL+ VPSLPKP AQKP KRAS NIADFYGG + ++MDAY+KGVLL+QAAEVG H EDG+LRPQAS ERDQQKLAHL+RVGKLG +ALRGK V SGKRR Sbjct: 16 GQQASPPEHSPTRSQLSNNSTSSRGASSSLRSGFTAPKSREQSPARFGAASADTLGAATGSSGGAVVAVSSKKMLKIGANVRFRGDVMECNTVVLCGRLQGFVETQRMTIKEGGMFIGDAKVEEADVYGSLDGSLESSAKVSIRSTGSVSGNVIYKKMTMEDGGELEGTFECSNRVGGRLRNREGSATGG----VGGLRRGSRDDSGALAVRDNQNTISPPGKQSPILWQNGQGAAYAGXXXXXXXXXXXEAWAGGGRVGAALERAGGXXXXXXXXXXXXXXSVMSSVARLEASPRGNPVPPGGTAAATTPVGVGTGGGALRRITP---TGAGLSTAVRAPSPLRPTRGLQVQGLGAEAGELFCEEAVTPVG------ESGAGVTNLPSTRSRRLSATAGXXXXXXXXXXXXXXXXXXXXXXTSVAARVGTWPPPSPVPSSTRLWQRRTENHTT-PAPAXXXAPPSTTAAPPAQTSGSVTQNTVKSLVESYKPPYLQGSTTASQRQQQEQPGSVSAASRTL---------APPSVADLAGSGPVGNGDGVAGGGAGVGRMGIPAEEKLDNYESALEEESDSDSAAKISGPVKACEVEGCTLEACWGDPRFRPRYCARHKKQGNKLMSPVEAEEGDKSAASPESSPPMEPLPSPAKP---LTDLKLGARGLPSVQRVEPPNGSXXXXXXXXXXXXXXXXXXXXXGWDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGVQPALPVVQAELVGNDDDRGHHNPDTEGYDEPEPVGYGGYXXXXXXXXXXXXXXXXXXXAD--DVQARVAAYTRLAGKKQPQTTAHVPSLPKPKAQKPKKRASATNIADFYGGGESDDDEEGTGYSMDAYNKGVLLNQAAEVGTHTEDGQLRPQASSERDQQKLAHLVRVGKLG---AALRGKGV--TSGKRR 932
BLAST of mRNA_L-elsbetiae_contig1194.1656.1 vs. uniprot
Match: A0A6H5K3I7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I7_9PHAE) HSP 1 Score: 303 bits (776), Expect = 1.780e-86 Identity = 277/651 (42.55%), Postives = 319/651 (49.00%), Query Frame = 1 Query: 121 GWRTSPTENSPARSQLSSNS------GFSLKSSNTATKSREQSPARL---AADATGXXXXXXXXXXVAVSNRKMLKIGANVRFRGDVMECNTVVLYGRLQGFVETRQLIIKEGAQFIGDAKVEEADVSGSLEGSLESSGKVSIRSTGLVSGNVIYKKMSMEEGGELEGAFECSNRGSGRRRSKEGMAAXXXXXXVGGLYWNNAASDEAS--------------------DRGRPALVAGQEPRGRNPPRPQQI--PPHRLNEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATASFAPAGESGSAEVVYAIPPPANSDSRASAHVRTFSPLRSG-GLQVQSLGGEASEVFSAEAVTPT----AGP---PSASELRGGGRT-------LLSVGVERGSVEGGSGGGGSTSVAARVGTWPPTSPSPVGSA-WQRRTENAVS-APAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRPLEXXXXXXXXXXXXXXXXXXXXXXXXXXXNGRSPSXXXXXXXXXXXXXXXXXXXXXXKVGDSGYESARDGEEAAGNEEEGGDASQGTAGPMKACESGSCTLEACWGDPRFRPRYCARHKKQGNKLMDPVEQEEGD-KAASPEGLSPPRGALPSP 1926 G + SP E+SP RSQLS++S SL+S+ TA+KSREQSPAR +AD G VAVS++KMLKIGANVRFRGDVMECNTVVL GRLQGFVET+++ I+EG FIGDAKVEEADV GSL+GSLES+ KVSIRSTG VSGNVIYKKM++E+GGELEG FECS G GR R++EG A VGGL + AS G+ A AG ++ R+ XXXXXXXXXX A A+ P G G A + P S A VR SPLRS GLQVQ LG EA E+FS EAVTP AG PSA R + + E G+ GGG TSVAARVGTWPP SP P + WQ+RTEN ++ APAPS G P K+ YESA + EE D++ AG +KACE CTLEACWGDPRFRPRYCARHKKQGNKLM+PVE EEGD AASPE SPP PSP Sbjct: 16 GQQASPPEHSPTRSQLSNHSTSSRGASSSLRSAYTASKSREQSPARFGAASADTLGAATGSSGGPVVAVSSKKMLKIGANVRFRGDVMECNTVVLCGRLQGFVETQRMTIREGGMFIGDAKVEEADVYGSLDGSLESTAKVSIRSTGSVSGNVIYKKMTLEDGGELEGTFECSRAG-GRLRNREGSATGG----VGGLRRGSRVDSGASAVRDNQNTISPPGKQSPILWQNGQGAAYAGGAXXXXXXXXXEEAWAGGGRVGAALERAGVGGXXXXXXXXXXSVMSSVAGLESSPRGHPVTPGDTAAAT-TPVGTGGGAR--RRVTPTGAGRSTA---VRAPSPLRSTRGLQVQGLGAEAGELFSEEAVTPVGESGAGVTDLPSARSRRSSATAGXXXXXXXXXXXCDGSAEEEGTSGGGGTSVAARVGTWPPPSPVPSSTRLWQKRTENHITPAPAPSPTPPSTTAAPPSQTSGSITQNTVKSLVESYKPPHLQGTTTASQRQQLEQPGSGSAVSRTLVSPSVSGLAGSGPVSNGDSVTGGRAGVGRMGIAAEEKL--DNYESALE-------EESDSDSAPRIAGSVKACEGDGCTLEACWGDPRFRPRYCARHKKQGNKLMNPVEAEEGDTSAASPE-ASPPMEPSPSP 645
BLAST of mRNA_L-elsbetiae_contig1194.1656.1 vs. uniprot
Match: A0A6H5K8A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A6_9PHAE) HSP 1 Score: 132 bits (331), Expect = 1.260e-31 Identity = 81/133 (60.90%), Postives = 87/133 (65.41%), Query Frame = 1 Query: 2386 DAGDVQARLATYERLSSSGGKAGKIQVPSLPKPGAQKPMKRASVNNIADFYGGXXXXXXXXESAFNMDAYSKGVLLSQAAEVGKHFEDGKLRPQASQERDQQKLAHLMRVGKLGGRISALRGKSVPTASGKRR 2784 DA DVQAR+A Y RL+ VPSLPKP AQK KRAS NIADFYGG E F MD Y+KGVL Q E G H EDG+LRPQAS ERDQQKLAHL+RVGKLG +ALRGK SGKRR Sbjct: 51 DAEDVQARVAAYTRLAGKKQPQTTAHVPSLPKPMAQKSKKRASATNIADFYGGGESDDEEKEG-FGMDPYNKGVLSGQFPEAGTHTEDGQLRPQASSERDQQKLAHLVRVGKLG---AALRGKGG--TSGKRR 177
BLAST of mRNA_L-elsbetiae_contig1194.1656.1 vs. uniprot
Match: UPI0019AA2601 (Polymer-forming cytoskeletal protein n=1 Tax=Herminiimonas sp. TaxID=1926289 RepID=UPI0019AA2601) HSP 1 Score: 80.1 bits (196), Expect = 1.910e-13 Identity = 44/113 (38.94%), Postives = 70/113 (61.95%), Query Frame = 1 Query: 316 LKIGANVRFRGDVMECNTVVLYGRLQGFVETRQLIIKEGAQFIGDAKVEEADVSGSLEGSLESSGKVSIRSTGLVSGNVIYKKMSMEEGGELEGAFECSNRGSGRRRSKEGMA 654 L +G N++ +G++ +C+T+V+ GR++ + +R L I EG FIG A+V+ A++ G +G L K+ I STG VSG + Y K+ +EEGG L G + GSG + G+A Sbjct: 72 LTVGPNIKLKGEITDCDTLVVEGRVEATMNSRVLQIAEGGAFIGTAEVDLAEIRGEFDGELTVRDKLVIYSTGKVSGKIRYGKLVIEEGGNLTGDVQV---GSGTGGAARGLA 181
BLAST of mRNA_L-elsbetiae_contig1194.1656.1 vs. uniprot
Match: A0A836CK37_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK37_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.200e-12 Identity = 40/94 (42.55%), Postives = 65/94 (69.15%), Query Frame = 1 Query: 316 LKIGANVRFRGDVMECNTVVLYGRLQGFVETRQLIIKEGAQFIGDAKVEEADVSGSLEGSLESSGKVSIRSTGLVSGNVIYKKMSMEEGGELEG 597 L+IG VRFRGDV C VL G+L GF+E +++K GDA+ +AD++G+L+GSLE G++SIR++G + +V+++++ ++ G LEG Sbjct: 8 LRIGVGVRFRGDVSNCRHAVLEGQLSGFLEAHAILVKPAGSLGGDARCHDADIAGTLKGSLECLGELSIRTSGNIVADVMFEELCVQRGAWLEG 101
BLAST of mRNA_L-elsbetiae_contig1194.1656.1 vs. uniprot
Match: UPI00190C2156 (polymer-forming cytoskeletal protein n=1 Tax=Noviherbaspirillum pedocola TaxID=2801341 RepID=UPI00190C2156) HSP 1 Score: 74.7 bits (182), Expect = 1.370e-11 Identity = 39/120 (32.50%), Postives = 71/120 (59.17%), Query Frame = 1 Query: 298 VSNRKMLKIGANVRFRGDVMECNTVVLYGRLQGFVETRQLIIKEGAQFIGDAKVEEADVSGSLEGSLESSGKVSIRSTGLVSGNVIYKKMSMEEGGELEGAFECSNRGSGRRRSKEGMAA 657 VS L +G ++ +G++ +C+T+V+ G+++ +E+R + I E F G +VE A+++G+ +G L + K+ I STG V+G + + K+ +EEGG+L G + G+ R AA Sbjct: 64 VSGGSKLIVGQKIKLKGEIADCDTLVVEGQVEATMESRVIQIAESGTFKGSVQVEVAEINGTFDGDLTARQKLVIHSTGKVTGTIRFGKIVIEEGGQLSGDVQVGLDGANRNNLSVAKAA 183
BLAST of mRNA_L-elsbetiae_contig1194.1656.1 vs. uniprot
Match: UPI00164D95B3 (polymer-forming cytoskeletal protein n=1 Tax=Ramlibacter sp. GTP1 TaxID=2079448 RepID=UPI00164D95B3) HSP 1 Score: 72.0 bits (175), Expect = 1.020e-10 Identity = 36/102 (35.29%), Postives = 63/102 (61.76%), Query Frame = 1 Query: 316 LKIGANVRFRGDVMECNTVVLYGRLQGFVETRQLIIKEGAQFIGDAKVEEADVSGSLEGSLESSGKVSIRSTGLVSGNVIYKKMSMEEGGELEGAFECSNRG 621 L IG N++ +G++ +C+T+V+ G ++ +++R + I E F G A+++ A++ G +G L K+ I STG V G V Y +M +E+GG+L G E +G Sbjct: 62 LTIGPNIKLKGEIKDCDTLVVEGSVEATMDSRVIQISERGAFKGSAEIDIAEIRGQFDGDLTVRKKLVIYSTGKVRGRVRYGEMEVEKGGQLSGEIESGTQG 163
BLAST of mRNA_L-elsbetiae_contig1194.1656.1 vs. uniprot
Match: A0A084XX02_9PROT (Polymer-forming cytoskeletal n=1 Tax=Candidatus Accumulibacter sp. SK-01 TaxID=1457154 RepID=A0A084XX02_9PROT) HSP 1 Score: 70.9 bits (172), Expect = 6.470e-10 Identity = 34/95 (35.79%), Postives = 64/95 (67.37%), Query Frame = 1 Query: 316 LKIGANVRFRG-DVMECNTVVLYGRLQGFVETRQLIIKEGAQFIGDAKVEEADVSGSLEGSLESSGKVSIRSTGLVSGNVIYKKMSMEEGGELEG 597 L +G +V+ +G ++++C+T+V+ GR++ +++R + I E F+G ++ A++ GS EG L + ++ I STG VSG + Y K+ ++EGGE+ G Sbjct: 102 LLVGPDVKLKGAEILDCDTLVVEGRVEATMDSRVIRIAENGAFVGKVSIDIAEIHGSFEGELTARSQLIIHSTGRVSGKIRYGKLVVDEGGEVSG 196
BLAST of mRNA_L-elsbetiae_contig1194.1656.1 vs. uniprot
Match: J2VDA8_9BURK (Integral membrane protein CcmA involved in cell shape determination n=1 Tax=Herbaspirillum sp. YR522 TaxID=1144342 RepID=J2VDA8_9BURK) HSP 1 Score: 69.3 bits (168), Expect = 8.580e-10 Identity = 34/97 (35.05%), Postives = 61/97 (62.89%), Query Frame = 1 Query: 316 LKIGANVRFRGDVMECNTVVLYGRLQGFVETRQLIIKEGAQFIGDAKVEEADVSGSLEGSLESSGKVSIRSTGLVSGNVIYKKMSMEEGGELEGAFE 606 L +G N++ +G++ +C+T+V+ GR+Q + R + I E F G A+++ A++ G +G L K+ I S+G V+G + Y K+ +EEGG+L G + Sbjct: 67 LTVGPNIKVKGEIEDCDTLVVEGRVQATINCRVVQIAERGAFKGSAEIDLAEIRGEFDGDLTVRQKLVIYSSGKVTGKIRYGKLVIEEGGQLAGDLQ 163
BLAST of mRNA_L-elsbetiae_contig1194.1656.1 vs. uniprot
Match: A0A4R3YBC5_9PROT (Cytoskeletal protein CcmA (Bactofilin family) n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3YBC5_9PROT) HSP 1 Score: 69.7 bits (169), Expect = 9.050e-10 Identity = 35/104 (33.65%), Postives = 66/104 (63.46%), Query Frame = 1 Query: 316 LKIGANVRFRG-DVMECNTVVLYGRLQGFVETRQLIIKEGAQFIGDAKVEEADVSGSLEGSLESSGKVSIRSTGLVSGNVIYKKMSMEEGGELEGAFECSNRGS 624 L +G N++ +G ++ +C +V+ GR++ + +R + I EG F G A+++ A++ GS EG L + ++ I STG V+G + Y +++EEGG +EG ++G+ Sbjct: 47 LTVGPNIKLKGSEITDCEILVVEGRVEASMNSRDIRIAEGGVFSGKAEIDVAEIRGSFEGELTARKQLVIYSTGKVTGTIRYGALTIEEGGVIEGEVAAISKGT 150 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1194.1656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1194.1656.1 >prot_L-elsbetiae_contig1194.1656.1 ID=prot_L-elsbetiae_contig1194.1656.1|Name=mRNA_L-elsbetiae_contig1194.1656.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=893bp MKGFGWRTSPTENSPARSQLSSNSGFSLKSSNTATKSREQSPARLAADATback to top mRNA from alignment at L-elsbetiae_contig1194:4275..22066+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1194.1656.1 ID=mRNA_L-elsbetiae_contig1194.1656.1|Name=mRNA_L-elsbetiae_contig1194.1656.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=17792bp|location=Sequence derived from alignment at L-elsbetiae_contig1194:4275..22066+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1194:4275..22066+ >mRNA_L-elsbetiae_contig1194.1656.1 ID=mRNA_L-elsbetiae_contig1194.1656.1|Name=mRNA_L-elsbetiae_contig1194.1656.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5358bp|location=Sequence derived from alignment at L-elsbetiae_contig1194:4275..22066+ (Laminarionema elsbetiae ELsaHSoW15)back to top |