mRNA_L-elsbetiae_contig11930.1653.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11930.1653.1
Unique NamemRNA_L-elsbetiae_contig11930.1653.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11930.1653.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.490e-34
Identity = 54/94 (57.45%), Postives = 75/94 (79.79%), Query Frame = 2 
Query:    2 WHSGSLMEPSSYIVYYEEAQKSHLPLIGMANFMGLECSANQAYKAWKSHKNISPHDDYTMHGLTEETIQWMNATMAKLLPPSVALRYGVTPTEL 283
            WH+ ++M PSS++V+YE+ +  H   IGMA+FMGL CS   A + W++H+N +PH DY+ HGL +ET+QWMN TMA+LLPPS+ALR+GVTPT+L
Sbjct:  291 WHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNPAPHGDYSTHGLKQETVQWMNETMARLLPPSLALRWGVTPTDL 384
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BLAST of mRNA_L-elsbetiae_contig11930.1653.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.120e-32
Identity = 54/94 (57.45%), Postives = 73/94 (77.66%), Query Frame = 2 
Query:    2 WHSGSLMEPSSYIVYYEEAQKSHLPLIGMANFMGLECSANQAYKAWKSHKNISPHDDYTMHGLTEETIQWMNATMAKLLPPSVALRYGVTPTEL 283
            WH+ ++M PSS++V+YE+ +  H   IGMA+FMGL CS   A + W++H+N +PH DY+ HGL  ETIQWMN TMA+LLPPS+A R+GVTPT+L
Sbjct:  357 WHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNPAPHGDYSTHGLQLETIQWMNETMARLLPPSLAFRWGVTPTDL 450
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BLAST of mRNA_L-elsbetiae_contig11930.1653.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.600e-30
Identity = 55/94 (58.51%), Postives = 70/94 (74.47%), Query Frame = 2 
Query:    2 WHSGSLMEPSSYIVYYEEAQKSHLPLIGMANFMGLECSANQAYKAWKSHKNISPHDDYTMHGLTEETIQWMNATMAKLLPPSVALRYGVTPTEL 283
            WH+G+LM PSS+I  YEE Q+SHL LI +A FMGL+CS  QA K W   ++ SP   Y   GL+ ET+ +MNATMA+LLPP++ALR+ VTPTEL
Sbjct:  205 WHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPSGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTEL 298
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BLAST of mRNA_L-elsbetiae_contig11930.1653.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.950e-30
Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = 2 
Query:    2 WHSGSLMEPSSYIVYYEEAQKSHLPLIGMANFMGLECSANQAYKAWKSHKNISPHDDYTMHGLTEETIQWMNATMAKLLPPSVALRYGVTPTEL 283
            WH+G LM PSS++ +Y+E QKS +  +G+A  MGLECS +QAYK WK+HK  SP+  +    L E TIQ+MNATMA+LLPPSVA+++G+TPTEL
Sbjct:  308 WHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQASPNGGFATR-LGEATIQFMNATMARLLPPSVAIQWGLTPTEL 400
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BLAST of mRNA_L-elsbetiae_contig11930.1653.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 5.160e-22
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 2 
Query:    2 WHSGSLMEPSSYIVYYEEAQ-----------------------------KSHLPLIGMANFMGLECSANQAYKAWKSHKNISPHDDYTMHGLTEETIQWMNATMAKLLPPSVALRYGVTPTE 280
            WH+ +++  SS++++Y++ Q                              + + +I +A FMGLECS +QA   W+SH+N  PH DYT HGL   TI+WMNATMA LLP +V+L +G+TPT+
Sbjct:  177 WHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTD 298
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11930.1653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FXT7_ECTSI5.490e-3457.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6E2_9PHAE2.120e-3257.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZR3_9PHAE5.600e-3058.51Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L183_9PHAE5.950e-3058.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JLX3_9PHAE5.160e-2238.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11930contigL-elsbetiae_contig11930:351..1058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size341
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11930.1653.1prot_L-elsbetiae_contig11930.1653.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11930 406..1039 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815394.3880613-UTR-L-elsbetiae_contig11930:350..4051622815394.3880613-UTR-L-elsbetiae_contig11930:350..405Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11930 351..405 -
1691682876.5781822-UTR-L-elsbetiae_contig11930:350..4051691682876.5781822-UTR-L-elsbetiae_contig11930:350..405Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11930 351..405 -
1622815394.4252503-UTR-L-elsbetiae_contig11930:1039..10581622815394.4252503-UTR-L-elsbetiae_contig11930:1039..1058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11930 1040..1058 -
1691682876.604896-UTR-L-elsbetiae_contig11930:1039..10581691682876.604896-UTR-L-elsbetiae_contig11930:1039..1058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11930 1040..1058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815394.3990257-CDS-L-elsbetiae_contig11930:405..6301622815394.3990257-CDS-L-elsbetiae_contig11930:405..630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11930 406..630 -
1691682876.5871232-CDS-L-elsbetiae_contig11930:405..6301691682876.5871232-CDS-L-elsbetiae_contig11930:405..630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11930 406..630 -
1622815394.4144194-CDS-L-elsbetiae_contig11930:997..10391622815394.4144194-CDS-L-elsbetiae_contig11930:997..1039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11930 998..1039 -
1691682876.5969036-CDS-L-elsbetiae_contig11930:997..10391691682876.5969036-CDS-L-elsbetiae_contig11930:997..1039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11930 998..1039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11930.1653.1

>prot_L-elsbetiae_contig11930.1653.1 ID=prot_L-elsbetiae_contig11930.1653.1|Name=mRNA_L-elsbetiae_contig11930.1653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MEPSSYIVYYEEAQKSHLPLIGMANFMGLECSANQAYKAWKSHKNISPHD
DYTMHGLTEETIQWMNATMAKLLPPSVALRYGVTPTEL*
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mRNA from alignment at L-elsbetiae_contig11930:351..1058-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11930.1653.1 ID=mRNA_L-elsbetiae_contig11930.1653.1|Name=mRNA_L-elsbetiae_contig11930.1653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig11930:351..1058- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACTCAGGGAGTCTCATGGAGCCGTCGTCCTACATCGTGTACTATG
AAGAGGCGCAGGTGCGTGGCATGGCGCTGCACGATCGATAAAGCAGGCGA
TGTCTCAAGTCAGTTTATCACAGACAGGTCAATCCTCTCTATTTCTTATT
TTCGGTTTTGGGCAGTCTCCATGGTTTGGAGGACACAGACTACTACCCTC
AGCGTTCGCGTGACAACCAATAATAATGACTCGAGCTTCGCGTTCCGCAA
AGAAGCCAACCTTCACGTTTTCGGTTTGTGGATATGTACTCCCGGATATG
GGATATTATGGCGAAAATGGACACACGCACACGAATTACCAGAATCGGCG
GTTCATGGCCGCTTCACGAACTTTACTGAATGTTAATGCTGGGGCTGCCT
TCCACGCGTCGCGTTATTCTCCTCGCAGAAGAGCCATCTGCCATTGATTG
GGATGGCCAACTTCATGGGCCTCGAGTGCTCCGCAAACCAGGCCTACAAG
GCGTGGAAGTCTCACAAAAACATATCGCCGCACGACGACTACACCATGCA
CGGACTCACGGAGGAGACGATCCAGTGGATGAACGCCACAATGGCGAAGC
TGCTTCCACCGTCCGTAGCGCTTCGTTATGGAGTAACCCCAACTGAACTC
TGAGCCAGAAAGCCAATGCCGGGGCTGCTTGCTTGTGTTGATGGTTGGAA
GAGCCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11930:351..1058-

>mRNA_L-elsbetiae_contig11930.1653.1 ID=mRNA_L-elsbetiae_contig11930.1653.1|Name=mRNA_L-elsbetiae_contig11930.1653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig11930:351..1058- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCCGTCGTCCTACATCGTGTACTATGAAGAGGCGCAGATGGAGCC
GTCGTCCTACATCGTGTACTATGAAGAGGCGCAGAAGAGCCATCTGCCAT
TGATTGGGATGGCCAACTTCATGGGCCTCGAGTGCTCCGCAAACCAGGCC
TACAAGGCGTGGAAGTCTCACAAAAACATATCGCCGCACGACGACTACAC
CATGCACGGACTCACGGAGGAGACGATCCAGTGGATGAACGCCACAATGG
CGAAGCTGCTTCCACCGTCCGTAGCGCTTCGTTATGGAGTAACCCCAACT
GAACTCTGAAAGAGCCATCTGCCATTGATTGGGATGGCCAACTTCATGGG
CCTCGAGTGCTCCGCAAACCAGGCCTACAAGGCGTGGAAGTCTCACAAAA
ACATATCGCCGCACGACGACTACACCATGCACGGACTCACGGAGGAGACG
ATCCAGTGGATGAACGCCACAATGGCGAAGCTGCTTCCACCGTCCGTAGC
GCTTCGTTATGGAGTAACCCCAACTGAACTCTGA
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