mRNA_L-elsbetiae_contig11923.1650.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11923.1650.1
Unique NamemRNA_L-elsbetiae_contig11923.1650.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11923.1650.1 vs. uniprot
Match: A0A6H5KFA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA2_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 1.120e-96
Identity = 153/262 (58.40%), Postives = 196/262 (74.81%), Query Frame = 3
Query:  531 IVLAALLAALLLCNAICF--FMFKRRKXXXXXXXXXPVGTRDANADLELGRLQGNLAAERNRRIRAEAIIQRAKGGGIRPGDFPSVRDVDRDVEKLAEHAIKWTEKAGAIGGSHFALPATLQSVLENTFLVCREEVTRCFDEKLLSLSEFLGNDEPIVLSGGDSMNLDTQYVLYECLRRNFRKIVPVEPERMDELAGEVQQRCGGAADGKLASAIVSGDAWPAFENLMKNYILVFVEMALQHPPMDFNDDLGKSRAFDPAVH 1310
            + L+ LLAAL+L N  CF  F+ +RRK           G RDAN ++ELGRL+ +L  E +RR++AE ++ RAKGGG+R GDFPSVRDV + V +LA+ A+ WTEKA A+GGSH A+  T+ SVL NTFLVCREEV RC DE+L +LS FLGNDEPI+LS GD MNLDTQYVLYECL +++++IVP +P+RM+ LAG V +RC   AD  LA+ I+SG AWP+FE LMKNY++VFVEMALQ P ++F D+LG +  FD  VH
Sbjct:   49 VALSVLLAALVLGNIACFAWFLMRRRKEPPTPPS---AGRRDANTEVELGRLRRDLETEHSRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPAVNGTILSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPDRMNALAGVVLRRCEEPADESLANEIISGPAWPSFEALMKNYLMVFVEMALQKPRVEFEDNLGDAVTFDSVVH 307          
BLAST of mRNA_L-elsbetiae_contig11923.1650.1 vs. uniprot
Match: D7FSP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP0_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 8.520e-96
Identity = 162/260 (62.31%), Postives = 199/260 (76.54%), Query Frame = 3
Query:  531 IVLAALLAALLLCNAICFFMFKRRKXXXXXXXXXPVGTRDANADLELGRLQGNLAAERNRRIRAEAIIQRAKGGGIRPGDFPSVRDVDRDVEKLAEHAIKWTEKAGAIGGSHFALPATLQSVLENTFLVCREEVTRCFDEKLLSLSEFLGNDEPIVLSGGDSMNLDTQYVLYECLRRNFRKIVPVEPERMDELAGEVQQRCGGAADGKLASAIVSGDAWPAFENLMKNYILVFVEMALQHPPMDFNDDLGKSRAFDPAVH 1310
            I L+ LLAAL+L N  CF     R+ XXXXXXX P G RDAN ++ELGRL+ +L  E  RR++AE ++ RAKGGG+R GDFPSVRDV + V +LA+ A+ WTEKA A+GGSH AL  T+ SVL NTFLVCREEV RC DE+L +LS FLGNDEPI+LS GD MNLDTQYVLYECL +++++IVP +P+RMD LAG V QRCG  AD  LA+ I+SG  WP+FE LMKNY+LVFVEMALQ P ++F D+LG +  FD  +H
Sbjct:  219 IALSVLLAALVLGNIACFAWCLMRRRXXXXXXX-PAGRRDANTEVELGRLRRDLETEHTRRVKAETLVHRAKGGGLRSGDFPSVRDVYQHVYQLADDALAWTEKACAVGGSHPALNGTVLSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEMNLDTQYVLYECLCKDYQRIVPADPDRMDALAGVVLQRCGEPADRSLANEILSGATWPSFEALMKNYLLVFVEMALQKPRVEFEDNLGDAMTFDSIIH 477          
BLAST of mRNA_L-elsbetiae_contig11923.1650.1 vs. uniprot
Match: A0A6H5KA22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA22_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 1.640e-86
Identity = 153/262 (58.40%), Postives = 185/262 (70.61%), Query Frame = 3
Query:  525 GTIVLAALLAALLLCNAICFFMFKRRKXXXXXXXXXPVGTRDANADLELGRLQGNLAAERNRRIRAEAIIQRAKGGGIRPGDFPSVRDVDRDVEKLAEHAIKWTEKAGAIGGSHFALPATLQSVLENTFLVCREEVTRCFDEKLLSLSEFLGNDEPIVLSGGDSMNLDTQYVLYECLRRNFRKIVPVEPERMDELAGEVQQRCGGAADGKLASAIVSGDAWPAFENLMKNYILVFVEMALQHPPMDFNDDLGKSRAFDPAVH 1310
            G +VL+ +L AL+L NA          XXXXXXX    G   A  D+E+ RL+ +L  E  RR++AE +I R+ GGG+RPG FP VRDV + V  LA+ A+ WTEKA A+GGS  A   T +SVL NTFLVCREEV RC DE+L +LS FLGNDEPI+LS GD  +LDTQYVLYECL R +R IV  EP+RMDELAG + QRCG  AD  LA+ I+SG  WP+FE LMKNY+LVFVEM LQ P +DF D+LG + AFDPA H
Sbjct:   23 GVVVLSGILGALVLGNAAWLACXXXXXXXXXXXXAGGYG---ATEDVEVDRLRRDLETEHTRRVKAETLIHRSSGGGLRPGAFPGVRDVYQHVGHLADDALAWTEKAFAVGGSRQAWYGTTRSVLYNTFLVCREEVQRCLDERLQNLSAFLGNDEPILLSAGDEKSLDTQYVLYECLCRKYRTIVSTEPDRMDELAGLILQRCGEPADRGLANEIMSGATWPSFEALMKNYLLVFVEMTLQKPGIDFEDNLGDNVAFDPAEH 281          
BLAST of mRNA_L-elsbetiae_contig11923.1650.1 vs. uniprot
Match: D7FSP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP1_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 1.370e-80
Identity = 135/224 (60.27%), Postives = 159/224 (70.98%), Query Frame = 3
Query:  639 GTRDANADLELGRLQGNLAAERNRRIRAEAIIQRAKGGGIRPGDFPSVRDVDRDVEKLAEHAIKWTEKAGAIGGSHFALPATLQSVLENTFLVCREEVTRCFDEKLLSLSEFLGNDEPIVLSGGDSMNLDTQYVLYECLRRNFRKIVPVEPERMDELAGEVQQRCGGAADGKLASAIVSGDAWPAFENLMKNYILVFVEMALQHPPMDFNDDLGKSRAFDPAVH 1310
            G   A  D+E+GRL+ +L  E  RR+ AE +I R+ GGG+RPG FPSV DV + V  LA+ A+ WTEKA A+GGS      T +SVL NTFLVCREEV RC DE+L  LS FLGN EPI+LS GD  +LD QYVLYECL R +R IV  EP+RMDELA  + QRCG  AD  LA+ I SG  WP+FE LMKNY+LVFVEMALQ P +DF D LG + AFDPA H
Sbjct:  108 GGHGATEDVEVGRLRRDLDTEHTRRVNAETLIHRSSGGGLRPGVFPSVGDVYQHVGHLADDALAWTEKAFAVGGSRQTWYGTTRSVLYNTFLVCREEVQRCLDERLQILSAFLGNAEPILLSAGDEKSLDPQYVLYECLCRKYRTIVSTEPDRMDELARLILQRCGEPADRGLANEITSGATWPSFEALMKNYLLVFVEMALQKPGIDFEDSLGDNVAFDPAEH 331          
BLAST of mRNA_L-elsbetiae_contig11923.1650.1 vs. uniprot
Match: D7FRD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD0_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 7.920e-59
Identity = 122/276 (44.20%), Postives = 171/276 (61.96%), Query Frame = 3
Query:  540 AALLAALLLCNAIC--FFMFKRRKXXXXXXXXXPVGTRDANADLELGRLQGNLAAERNRRIRAEA--------------IIQRAKGGGIRPG-DFPSVRDVDRDVEK-LAEHAIKWTEKAGAIGGSHFALPATLQSVLENTFLVCREEVTRCFDEKLLSLSEFLGNDEPIVLSGGDSMNLDTQYVLYECLRRNFRKIVPVEPERMDELAGEVQQRCGGAADGKLASAIVSGDAWPAFENLMKNYILVFVEMALQHPPMDF-NDDLGKSRAFDPAVH 1310
            A LL+AL+L N  C  ++  +R K           G     AD EL  L+  +A E++RR  AEA              ++ R++  G+RPG DFPSVR V ++++  L + A++WTEK   +GGS   L AT+++VLE+TF VCR+E  RC D +L + +E LG DEPI LSG  SMNLDT+YVLY CL RN++ IV ++P ++  LA  + QRC G  D  LA +I SG+A P F+ LMK+Y+ VF+ M LQ+PPM F +DDLG +  FD ++H
Sbjct:   66 AVLLSALVLGNVACAAWYFLRRCKTPPTRLPHHRSGI----ADAELDTLRKKVATEKSRRELAEADMEAARRQLNAYESLVLRSEVKGVRPGNDFPSVRSVLQEIKHGLIDDALRWTEKVSTLGGSQAGLTATIRAVLEHTFHVCRKEAMRCLDNRLRAFTECLGEDEPISLSGDKSMNLDTEYVLYTCLCRNYKTIVSMKPSQVQNLAVTIVQRCKGHED--LAGSITSGNARPFFDALMKHYLQVFIVMGLQNPPMGFKDDDLGMNTTFDGSLH 335          
BLAST of mRNA_L-elsbetiae_contig11923.1650.1 vs. uniprot
Match: A0A6H5JCP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 7.690e-10
Identity = 64/246 (26.02%), Postives = 102/246 (41.46%), Query Frame = 3
Query:  666 ELGRLQGNLAAERNRRIRAEAIIQRAKGG------GIRPGDFPSVRDVDRDVEKLAEHAIKWTEKAGAIGGSHFALPATLQSVLENTFLVCREEVTRCFDEKLLSLSEFLGNDEPIVL--------SGGDSMNL-----------------DTQYVLYECLRRNFRKIVPVEPERMDELAGEVQQRCGGAADGKLASAIVSGDAWPAFENLMKNYILVFVEMALQHPPMDFNDDLGKSRAFDPAVH 1310
            ++ RL+  L  ER+RR+ AE  +    G       G+  GD       ++    L +      +K          L + + S+L + F  CR EV R    ++  L  F+G  E + L        +GG   +L                 DT  +LY  LRR  R I  +  + +  L+  V  R       K    ++    WP FE ++++Y+ +FVE ALQ P ++F++  GK   FDP  H
Sbjct:  241 DIQRLRSLLDTERSRRMAAETALSVGGGSVSSRRSGMCGGDGSGETKAEQLYSSLGQPQQSREQKQKM-------LLSVVTSILVHLFHCCRVEVRRRLRVRVDGLRAFVGEAEFVQLGSIVSGPGTGGPKASLAAAAGAAGATPGGVMAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKEIGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKH 479          
BLAST of mRNA_L-elsbetiae_contig11923.1650.1 vs. uniprot
Match: D8LEG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG1_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 2.080e-7
Identity = 33/98 (33.67%), Postives = 50/98 (51.02%), Query Frame = 3
Query: 1017 MNLDTQYVLYECLRRNFRKIVPVEPERMDELAGEVQQRCGGAADGKLASAIVSGDAWPAFENLMKNYILVFVEMALQHPPMDFNDDLGKSRAFDPAVH 1310
            M  DT  +LY  LRR  R I  +  + +  L+  V  R       K    ++    WP FE ++++Y+ +FVE ALQ P ++F++  GK   FDP  H
Sbjct:    1 MAQDTHELLYGELRRRHRTIAGLGRKDLVTLSARVLSRALKTEAKKEVGRMLVHQTWPTFEPVVRSYLALFVECALQEPQIEFDEAAGKEEPFDPEKH 98          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11923.1650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KFA2_9PHAE1.120e-9658.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSP0_ECTSI8.520e-9662.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA22_9PHAE1.640e-8658.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSP1_ECTSI1.370e-8060.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRD0_ECTSI7.920e-5944.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCP3_9PHAE7.690e-1026.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEG1_ECTSI2.080e-733.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11923contigL-elsbetiae_contig11923:1998..5086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1312
Cds size723
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11923.1650.1prot_L-elsbetiae_contig11923.1650.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11923 1998..3743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815393.5440207-CDS-L-elsbetiae_contig11923:1997..20721622815393.5440207-CDS-L-elsbetiae_contig11923:1997..2072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11923 1998..2072 -
1691682876.3160653-CDS-L-elsbetiae_contig11923:1997..20721691682876.3160653-CDS-L-elsbetiae_contig11923:1997..2072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11923 1998..2072 -
1622815393.553469-CDS-L-elsbetiae_contig11923:2230..27831622815393.553469-CDS-L-elsbetiae_contig11923:2230..2783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11923 2231..2783 -
1691682876.3261714-CDS-L-elsbetiae_contig11923:2230..27831691682876.3261714-CDS-L-elsbetiae_contig11923:2230..2783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11923 2231..2783 -
1622815393.566146-CDS-L-elsbetiae_contig11923:3648..37431622815393.566146-CDS-L-elsbetiae_contig11923:3648..3743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11923 3649..3743 -
1691682876.3384671-CDS-L-elsbetiae_contig11923:3648..37431691682876.3384671-CDS-L-elsbetiae_contig11923:3648..3743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11923 3649..3743 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815393.5774186-UTR-L-elsbetiae_contig11923:3743..38051622815393.5774186-UTR-L-elsbetiae_contig11923:3743..3805Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11923 3744..3805 -
1691682876.3485887-UTR-L-elsbetiae_contig11923:3743..38051691682876.3485887-UTR-L-elsbetiae_contig11923:3743..3805Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11923 3744..3805 -
1622815393.5867732-UTR-L-elsbetiae_contig11923:4095..45701622815393.5867732-UTR-L-elsbetiae_contig11923:4095..4570Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11923 4096..4570 -
1691682876.3578699-UTR-L-elsbetiae_contig11923:4095..45701691682876.3578699-UTR-L-elsbetiae_contig11923:4095..4570Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11923 4096..4570 -
1622815393.596575-UTR-L-elsbetiae_contig11923:5036..50861622815393.596575-UTR-L-elsbetiae_contig11923:5036..5086Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11923 5037..5086 -
1691682876.367994-UTR-L-elsbetiae_contig11923:5036..50861691682876.367994-UTR-L-elsbetiae_contig11923:5036..5086Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11923 5037..5086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11923.1650.1

>prot_L-elsbetiae_contig11923.1650.1 ID=prot_L-elsbetiae_contig11923.1650.1|Name=mRNA_L-elsbetiae_contig11923.1650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
MFKRRKKTPTPPPPAPVGTRDANADLELGRLQGNLAAERNRRIRAEAIIQ
RAKGGGIRPGDFPSVRDVDRDVEKLAEHAIKWTEKAGAIGGSHFALPATL
QSVLENTFLVCREEVTRCFDEKLLSLSEFLGNDEPIVLSGGDSMNLDTQY
VLYECLRRNFRKIVPVEPERMDELAGEVQQRCGGAADGKLASAIVSGDAW
PAFENLMKNYILVFVEMALQHPPMDFNDDLGKSRAFDPAVH
back to top

mRNA from alignment at L-elsbetiae_contig11923:1998..5086-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11923.1650.1 ID=mRNA_L-elsbetiae_contig11923.1650.1|Name=mRNA_L-elsbetiae_contig11923.1650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3089bp|location=Sequence derived from alignment at L-elsbetiae_contig11923:1998..5086- (Laminarionema elsbetiae ELsaHSoW15)
AGAAGAAGGGCAGCTGTGCGCAGACAATGTGGCTCCTTGCATCCTCGGCG GTGAGGTCATCGGTTCCCGGGGACGACCAGAGACGCGTGTAGGGGTATAT GTGTATTTGGCTCATGAGCTCCACACGCGTTGCTGTTTGGCCGTGAACTC CGACCGAAATGAGTGAGTTATACGGAGGATTCCACATGATCGGATCAAAC TTGGGCGCCAAGCGCAAAAAAACAAACGTGGCCATCAATCTTGCTTTTTC AGTTTATATGGCGTCGACGACAACGCGACGACGATTTGCTAAAAATAGAC TGAGTAATAACACTTGATTACGTGCATAATACGCGGGTAATTTGTTACAA ATATAGTGAAATAAGCTTCCCGTATCAAGAGCTGCATAGCTATTATTCTA GAGTAATTGTTATTTTCACACGACCATTTCTATCTGACCCGGTCATGAAA CATGGCTAAACTTTGCGTTCTCTCGCTTATTCTTATCTTCCGGACTGCAA CGTCGGCGACAAAAAGGTGGCGCACCTGATTCCGGCGCCTCGGATACAGG TGGGTGCTGTTTGTTCCTGCGTCAAGAAGTTAACAAGGCCATAGCCAGCC TATGTACTTTGTACAGCGTTATTCCAGCACTACTTTGCGTGGCCAACTGT CCAGCGACCACACTTCTAAACTGGACCGCTTATGCCTGCGACATGTCGTG GTCGTCCAGACCGAGTAATTGGCTTGATTACGTGCATAGATATTTTCATA CATGCGCGGGAATGTGTTGTAACACAAACAGAAAGAGAGGAACTTCGCGT TATGTACTGTAAACACTCTCGGGCAATTGGCTTGTTCACGCGAGTGCTGC AATCTGTTTGGACCCGGTCATGAACCATCGTTAACCTCCGCGCTCTCTCG TCTATTTTTGATCTTCCGGACTTACCAACAACGGCCGGCAACGTCGGCGA CAAACAAGGCAGCACATCTGATTCCGGTGACTCGGGCATAGGTGGGTGTT GTTCGTTTCTGCGTCAAGATAGTTAGCAAGACCACAGCCGGCGTAAGCCA GCTCGGAGAGAGCTCGTACGCCGGTGTACTTTGTACTGCGTTACTCCAGC ACTAGTGCCAACTGTCCAGCGATCACACTTCAAAAATGAAATGCCTATGC CTGCGCTATTACTCCGCCTTCTCTGGTGCAACGGGCGCTACCTCCGGTAG AATATGCTTCGTCTTATCGATTCCGTACGCTCCCGGTGTGCTTGCTGGCT TGAATCGTAAATATTGTGTGACAAAACACAGGCACAATCGTACTGGCGGC CCTGCTAGCGGCATTGCTCCTGTGCAATGCCATATGCTTCTTCATGTTCA AACGCCGCAAGAAAACGCCGACTCCTCCCCCGCCGGCGCCGGTCGGAACC CGTGACGCCAACGCCGACTTAGAACTGGGTCGTCTACAGTGAGTCAGCAG GCGATTTCGGTATATTTTTTTATTTTTTTACTATTGGTCTGCTCTTGAAT CGAGGTATGGTATTGCACATATTGCCACCCAAAGCACCGCCACTGCAGAA ACCAGTTTTGGCGTGGTTGGCTGCCTGTGGTGCCATAGGGGGTGTGGCAC GCGTCTGTGCCTGGTCACTCGTGCCGACCGGCGATCCGTTTTGACTTGCA CTCGGGTTCCGCGCCTTGCGCATGACTTTGCTGACCGTGGCCCGGTCTCG TGCTGACCTGGAGTAGCTGGCACTTTGAAATAGCAGCCAACATACATCGC TACTGCGTTGGCAGAGCACGCGCACACCCGTTTGGCAGACTTTGTTTGTC TTCTGCATCTTCACAAGTTGGGGTGCATGTTCTGGCTTTATGTCTTCTTC CTGCTGTGCGTACAACCAACACGACGTCCGAGCTCGATGTGTGTATATGT TTTACCAGAGTTCATCATATGTGGACATCTTCATGGTTGAAGCGTTGCCT CGGCGGCCTTGCATCAGCTATTTCCAACAGTCGCGTATACTATGTTACAA CCATTTTGGCGAGCATACATAACGTATACGATACGAGATAACACACTCCC TGGACTGATTTTCAAAGCCCGGTTACTCCGCAACGAGTATGATTCTAACA CCAAACGACACGTTTCCGGACAGCTCTTGATGAGATATTTCGAACGCTGC CCTTTTCAGGACTGCCACTCTTCTCGCTGTCGAGAACTTGATCTTTGAAA ATCGGTCCAGGGGGTGTGTTACCTTGGGTCGTATACGGTACATACATACA TACGTACATACAAACATACGTCGGTGCCGACTCGGCCTCATTGCGCGCCG CAGGGGAAACCTCGCGGCTGAGCGAAACAGGCGCATCAGGGCGGAAGCCA TCATTCAGCGCGCCAAGGGGGGCGGGATACGACCGGGAGACTTCCCCAGC GTGCGCGACGTGGACCGCGACGTGGAAAAGCTGGCCGAGCACGCCATCAA GTGGACCGAGAAGGCCGGCGCCATCGGCGGGTCCCACTTTGCCTTGCCCG CGACCCTTCAGAGCGTCCTGGAGAACACGTTCTTGGTCTGCAGGGAGGAG GTGACGCGGTGCTTCGACGAGAAGCTCCTGAGCCTTTCGGAGTTCCTGGG CAACGACGAGCCGATCGTGCTCTCGGGGGGTGATTCGATGAACCTGGACA CCCAGTACGTGCTGTACGAGTGCCTCCGCCGGAACTTCCGGAAGATTGTG CCGGTCGAACCAGAGCGCATGGACGAGCTCGCGGGGGAAGTCCAGCAGCG CTGCGGGGGCGCTGCGGATGGGAAACTCGCCAGCGCCATCGTCTCCGGAG ATGCGTGGCCAGCTTTCGAAAACCTCATGAAAAACTACATATTGGTTTTC GTTGAGGTGAGCAGGGTCTAGCCACAAGTATCGATATTTATCCATCCCCG GCCAGACACGCATTCAACCGCGCGTTTGCCTTTTAGCGTTGGCGCATTAA CCAACCGCGCCTCATACGGCTTCCACGTATGTACGCACACTCGTGCAACT CTCGCTGACCGCAGATGGCCCTTCAGCACCCCCCCATGGACTTCAACGAT GACCTCGGCAAGAGTCGGGCTTTCGACCCTGCCGTTCAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11923:1998..5086-

>mRNA_L-elsbetiae_contig11923.1650.1 ID=mRNA_L-elsbetiae_contig11923.1650.1|Name=mRNA_L-elsbetiae_contig11923.1650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig11923:1998..5086- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCAAACGCCGCAAGAAAACGCCGACTCCTCCCCCGCCGGCGCCGGT
CGGAACCCGTGACGCCAACGCCGACTTAGAACTGGGTCGTCTACAATGTT
CAAACGCCGCAAGAAAACGCCGACTCCTCCCCCGCCGGCGCCGGTCGGAA
CCCGTGACGCCAACGCCGACTTAGAACTGGGTCGTCTACAGGGAAACCTC
GCGGCTGAGCGAAACAGGCGCATCAGGGCGGAAGCCATCATTCAGCGCGC
CAAGGGGGGCGGGATACGACCGGGAGACTTCCCCAGCGTGCGCGACGTGG
ACCGCGACGTGGAAAAGCTGGCCGAGCACGCCATCAAGTGGACCGAGAAG
GCCGGCGCCATCGGCGGGTCCCACTTTGCCTTGCCCGCGACCCTTCAGAG
CGTCCTGGAGAACACGTTCTTGGTCTGCAGGGAGGAGGTGACGCGGTGCT
TCGACGAGAAGCTCCTGAGCCTTTCGGAGTTCCTGGGCAACGACGAGCCG
ATCGTGCTCTCGGGGGGTGATTCGATGAACCTGGACACCCAGTACGTGCT
GTACGAGTGCCTCCGCCGGAACTTCCGGAAGATTGTGCCGGTCGAACCAG
AGCGCATGGACGAGCTCGCGGGGGAAGTCCAGCAGCGCTGCGGGGGCGCT
GCGGATGGGAAACTCGCCAGCGCCATCGTCTCCGGAGATGCGTGGCCAGC
TTTCGAAAACCTCATGAAAAACTACATATTGGTTTTCGTTGAGGGGAAAC
CTCGCGGCTGAGCGAAACAGGCGCATCAGGGCGGAAGCCATCATTCAGCG
CGCCAAGGGGGGCGGGATACGACCGGGAGACTTCCCCAGCGTGCGCGACG
TGGACCGCGACGTGGAAAAGCTGGCCGAGCACGCCATCAAGTGGACCGAG
AAGGCCGGCGCCATCGGCGGGTCCCACTTTGCCTTGCCCGCGACCCTTCA
GAGCGTCCTGGAGAACACGTTCTTGGTCTGCAGGGAGGAGGTGACGCGGT
GCTTCGACGAGAAGCTCCTGAGCCTTTCGGAGTTCCTGGGCAACGACGAG
CCGATCGTGCTCTCGGGGGGTGATTCGATGAACCTGGACACCCAGTACGT
GCTGTACGAGTGCCTCCGCCGGAACTTCCGGAAGATTGTGCCGGTCGAAC
CAGAGCGCATGGACGAGCTCGCGGGGGAAGTCCAGCAGCGCTGCGGGGGC
GCTGCGGATGGGAAACTCGCCAGCGCCATCGTCTCCGGAGATGCGTGGCC
AGCTTTCGAAAACCTCATGAAAAACTACATATTGGTTTTCGTTGAGATGG
CCCTTCAGCACCCCCCCATGGACTTCAACGATGACCTCGGCAAGAGTCGG
GCTTTCGACCCTGCCGTTCACATGGCCCTTCAGCACCCCCCCATGGACTT
CAACGATGACCTCGGCAAGAGTCGGGCTTTCGACCCTGCCGTTCAC
back to top