mRNA_L-elsbetiae_contig11922.1649.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11922.1649.1
Unique NamemRNA_L-elsbetiae_contig11922.1649.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11922.1649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11922contigL-elsbetiae_contig11922:4987..5515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size529
Cds size507
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815393.501754-CDS-L-elsbetiae_contig11922:4986..54931622815393.501754-CDS-L-elsbetiae_contig11922:4986..5493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11922 4987..5493 +
1691682876.2966824-CDS-L-elsbetiae_contig11922:4986..54931691682876.2966824-CDS-L-elsbetiae_contig11922:4986..5493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11922 4987..5493 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815393.5137298-UTR-L-elsbetiae_contig11922:5493..55151622815393.5137298-UTR-L-elsbetiae_contig11922:5493..5515Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11922 5494..5515 +
1691682876.3067455-UTR-L-elsbetiae_contig11922:5493..55151691682876.3067455-UTR-L-elsbetiae_contig11922:5493..5515Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11922 5494..5515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11922.1649.1prot_L-elsbetiae_contig11922.1649.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11922 4987..5493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11922.1649.1

>prot_L-elsbetiae_contig11922.1649.1 ID=prot_L-elsbetiae_contig11922.1649.1|Name=mRNA_L-elsbetiae_contig11922.1649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
MYFAPASSTIPPTESWVPSATVDSALAPTNFSGAFSAAANARSGPSAVPA
ATARTTCIKSDRVSAPHSVSSAAPAVLLLRPCARFFPAAGRAHAHVYLPL
LPGCGTGPSWGCGEGLLTTAVPGRRSCLLWYLSLRCSSDNGATGQKAATG
RHGTTRRETPSSWFSSIL*
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mRNA from alignment at L-elsbetiae_contig11922:4987..5515+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11922.1649.1 ID=mRNA_L-elsbetiae_contig11922.1649.1|Name=mRNA_L-elsbetiae_contig11922.1649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=529bp|location=Sequence derived from alignment at L-elsbetiae_contig11922:4987..5515+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTTCGCCCCCGCCTCCTCCACCATCCCACCCACGGAATCCTGGGT
TCCAAGCGCCACTGTAGACTCGGCACTCGCTCCTACCAATTTCTCTGGTG
CGTTCTCCGCTGCTGCTAACGCTCGGAGTGGTCCCAGCGCAGTTCCTGCA
GCTACCGCCAGGACGACCTGCATCAAGTCGGATCGAGTCAGCGCGCCGCA
CAGCGTGTCCTCGGCAGCACCCGCCGTGTTGCTCCTGCGGCCGTGCGCCC
GTTTTTTTCCTGCTGCAGGTAGAGCCCATGCACACGTATACCTACCGCTC
CTGCCCGGTTGCGGGACTGGGCCTAGTTGGGGTTGCGGGGAGGGGTTGTT
GACAACGGCAGTTCCGGGTCGTCGTTCATGTTTGCTGTGGTATCTATCGC
TGCGTTGCAGCAGTGATAACGGAGCAACAGGCCAGAAAGCCGCGACAGGG
CGCCATGGTACTACCAGAAGAGAAACACCCAGTAGCTGGTTCAGCAGCAT
CTTGTAAACAGCTCGTACACTCGTAGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11922:4987..5515+

>mRNA_L-elsbetiae_contig11922.1649.1 ID=mRNA_L-elsbetiae_contig11922.1649.1|Name=mRNA_L-elsbetiae_contig11922.1649.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig11922:4987..5515+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTTCGCCCCCGCCTCCTCCACCATCCCACCCACGGAATCCTGGGT
TCCAAGCGCCACTGTAGACTCGGCACTCGCTCCTACCAATTTCTCTGGTG
CGTTCTCCGCTGCTGCTAACGCTCGGAGTGGTCCCAGCGCAGTTCCTGCA
GCTACCGCCAGGACGACCTGCATCAAGTCGGATCGAGTCAGCGCGCCGCA
CAGCGTGTCCTCGGCAGCACCCGCCGTGTTGCTCCTGCGGCCGTGCGCCC
GTTTTTTTCCTGCTGCAGGTAGAGCCCATGCACACGTATACCTACCGCTC
CTGCCCGGTTGCGGGACTGGGCCTAGTTGGGGTTGCGGGGAGGGGTTGTT
GACAACGGCAGTTCCGGGTCGTCGTTCATGTTTGCTGTGGTATCTATCGC
TGCGTTGCAGCAGTGATAACGGAGCAACAGGCCAGAAAGCCGCGACAGGG
CGCCATGGTACTACCAGAAGAGAAACACCCAGTAGCTGGTTCAGCAGCAT
CTTGTAAATGTACTTCGCCCCCGCCTCCTCCACCATCCCACCCACGGAAT
CCTGGGTTCCAAGCGCCACTGTAGACTCGGCACTCGCTCCTACCAATTTC
TCTGGTGCGTTCTCCGCTGCTGCTAACGCTCGGAGTGGTCCCAGCGCAGT
TCCTGCAGCTACCGCCAGGACGACCTGCATCAAGTCGGATCGAGTCAGCG
CGCCGCACAGCGTGTCCTCGGCAGCACCCGCCGTGTTGCTCCTGCGGCCG
TGCGCCCGTTTTTTTCCTGCTGCAGGTAGAGCCCATGCACACGTATACCT
ACCGCTCCTGCCCGGTTGCGGGACTGGGCCTAGTTGGGGTTGCGGGGAGG
GGTTGTTGACAACGGCAGTTCCGGGTCGTCGTTCATGTTTGCTGTGGTAT
CTATCGCTGCGTTGCAGCAGTGATAACGGAGCAACAGGCCAGAAAGCCGC
GACAGGGCGCCATGGTACTACCAGAAGAGAAACACCCAGTAGCTGGTTCA
GCAGCATCTTGTAA
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