mRNA_L-elsbetiae_contig11918.1647.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11918.1647.1
Unique NamemRNA_L-elsbetiae_contig11918.1647.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11918.1647.1 vs. uniprot
Match: A0A836CBP1_9STRA (ATP binding protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP1_9STRA)

HSP 1 Score: 135 bits (339), Expect = 8.470e-38
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    1 SNGHGRYTELPDQPAFFEATKKSKWMAVHFYRPTTQRCQIVDGHLSRLAEKHLETRFCKIDAEKCPYLTEKLNIFVMPTILLIQGSQTIHQV 276
            +NGHGR +EL DQ  FF A KKS  MAVHFYRPTT RC IVD  + RLA +H+ETRFC+IDAEK PYL EKLNI VMPTILL++  +T+HQ+
Sbjct:   67 ANGHGRCSELSDQGEFFAAAKKSSSMAVHFYRPTTARCAIVDARMERLAPRHVETRFCRIDAEKSPYLVEKLNIVVMPTILLVKDGKTVHQI 158          
BLAST of mRNA_L-elsbetiae_contig11918.1647.1 vs. uniprot
Match: A0A6V1PIS8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PIS8_HETAK)

HSP 1 Score: 127 bits (318), Expect = 1.870e-34
Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    4 NGHGRYTELPDQPAFFEATKKSKWMAVHFYRPTTQRCQIVDGHLSRLAEKHLETRFCKIDAEKCPYLTEKLNIFVMPTILLIQGSQTIH 270
            N HGRYTE+ DQ  FF+ATKKSK M  HFYR  TQRCQIVD HL  LA +HLETRF KIDAEK P+L E+LNIF+MPT+L I+  +  H
Sbjct:   70 NDHGRYTEIGDQQQFFDATKKSKRMVAHFYRAATQRCQIVDRHLGDLAPRHLETRFVKIDAEKSPFLVERLNIFMMPTVLCIKEGKVAH 158          
BLAST of mRNA_L-elsbetiae_contig11918.1647.1 vs. uniprot
Match: A0A7S1CD91_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD91_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.780e-33
Identity = 51/92 (55.43%), Postives = 71/92 (77.17%), Query Frame = 1
Query:    1 SNGHGRYTELPDQPAFFEATKKSKWMAVHFYRPTTQRCQIVDGHLSRLAEKHLETRFCKIDAEKCPYLTEKLNIFVMPTILLIQGSQTIHQV 276
            S GHG+Y E+PDQ AFFE  K SK + VHFYR  T+RC+IVD H+  +A KH ET+FCK+DAEK P+L E+LNI+++PT++L++  +T H +
Sbjct:   64 SKGHGKYREIPDQKAFFEEVKASKRVVVHFYRAATRRCEIVDRHMDEIARKHPETKFCKVDAEKSPFLCERLNIWMLPTLVLVKDGKTEHSI 155          
BLAST of mRNA_L-elsbetiae_contig11918.1647.1 vs. uniprot
Match: A0A0B2USW7_TOXCA (Thioredoxin domain-containing protein 9-like protein n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2USW7_TOXCA)

HSP 1 Score: 122 bits (307), Expect = 4.600e-33
Identity = 52/91 (57.14%), Postives = 73/91 (80.22%), Query Frame = 1
Query:    4 NGHGRYTELPDQPAFFEATKKSKWMAVHFYRPTTQRCQIVDGHLSRLAEKHLETRFCKIDAEKCPYLTEKLNIFVMPTILLIQGSQTIHQV 276
            NGHG+Y ELPD+PAFFEATKKS  M VHF+RP+T+RC+IVD HL ++A +HLE RF  ++ EK P+LT++LNI V+PT+ ++  S+T+  +
Sbjct:   63 NGHGKYEELPDEPAFFEATKKSNRMVVHFFRPSTERCKIVDMHLRKIAPRHLEARFVCVNVEKSPFLTKRLNIRVLPTLAVVMNSKTVDYI 153          
BLAST of mRNA_L-elsbetiae_contig11918.1647.1 vs. uniprot
Match: A0A7S2XYB6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYB6_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.130e-33
Identity = 55/92 (59.78%), Postives = 70/92 (76.09%), Query Frame = 1
Query:    1 SNGHGRYTELPDQPAFFEATKKSKWMAVHFYRPTTQRCQIVDGHLSRLAEKHLETRFCKIDAEKCPYLTEKLNIFVMPTILLIQGSQTIHQV 276
            SNGHG Y EL +Q  FFEA KKS  M VHFYRP+T+ C  +D HL +LA +H+ETRF KIDAEK  +L E+LNIF+MPT+LL++  Q+ HQ+
Sbjct:   67 SNGHGHYQELQNQQDFFEAAKKSSQMVVHFYRPSTRHCATLDEHLGKLAPRHVETRFVKIDAEKSQFLCERLNIFMMPTLLLVKDGQSFHQI 158          
BLAST of mRNA_L-elsbetiae_contig11918.1647.1 vs. uniprot
Match: A0A4D9D6P5_9STRA (Thioredoxin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6P5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 6.680e-32
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    7 GHGRYTELPDQPAFFEATKKSKWMAVHFYRPTTQRCQIVDGHLSRLAEKHLETRFCKIDAEKCPYLTEKLNIFVMPTILLIQGSQTIHQV 276
            GHG Y EL  Q  FF+A K S  +  HFYRPTT+ CQ+VD H++RLA +H+ETRFCKI+AEK PYL EKLN+++MPTI+ I+  +T H +
Sbjct:   65 GHGEYAELASQQEFFDAAKHSPRVVCHFYRPTTKYCQVVDFHMARLAVRHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHI 154          
BLAST of mRNA_L-elsbetiae_contig11918.1647.1 vs. uniprot
Match: A0A7S1BMM5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMM5_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.180e-31
Identity = 51/90 (56.67%), Postives = 69/90 (76.67%), Query Frame = 1
Query:    7 GHGRYTELPDQPAFFEATKKSKWMAVHFYRPTTQRCQIVDGHLSRLAEKHLETRFCKIDAEKCPYLTEKLNIFVMPTILLIQGSQTIHQV 276
            GHGRY EL +   FFEA K S  + VHFYRPTT+ C++VD HL +L++K++ETRF K++AEK  YL EKLNIF+MPTILL++  + +H +
Sbjct:   80 GHGRYAELGETKEFFEAAKTSDRLVVHFYRPTTRYCEVVDAHLEKLSKKYIETRFVKMNAEKTDYLVEKLNIFMMPTILLVKAGKVVHHI 169          
BLAST of mRNA_L-elsbetiae_contig11918.1647.1 vs. uniprot
Match: A0A7R8UPG6_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8UPG6_HERIL)

HSP 1 Score: 117 bits (293), Expect = 5.200e-31
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    1 SNGHGRYTELPDQPAFFEATKKSKWMAVHFYRPTTQRCQIVDGHLSRLAEKHLETRFCKIDAEKCPYLTEKLNIFVMPTILLIQGSQT 264
            +NGHG Y+ELPD+  FFE +KKS  +  HFYR + +RC+IVD HL  LA KH+E RFCKI+AEKCP+LT++L I V+PTI LI+ S T
Sbjct:   58 ANGHGSYSELPDEKEFFEMSKKSANIVCHFYRDSAERCKIVDKHLKILAPKHVEARFCKINAEKCPFLTQRLRIKVIPTIALIKDSHT 145          
BLAST of mRNA_L-elsbetiae_contig11918.1647.1 vs. uniprot
Match: A0A1D1W5V9_RAMVA (Thioredoxin domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1W5V9_RAMVA)

HSP 1 Score: 116 bits (291), Expect = 1.070e-30
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 1
Query:    1 SNGHGRYTELPDQPAFFEATKKSKWMAVHFYRPTTQRCQIVDGHLSRLAEKHLETRFCKIDAEKCPYLTEKLNIFVMPTILLI 249
            SNGHG YTELPD+  FF+A KKS  +  HFYRPTT RCQIVD HL  LA +HLETRF KI+ E+CP+L ++L I V+PTI L+
Sbjct:   60 SNGHGVYTELPDEKEFFQAGKKSNKLVCHFYRPTTLRCQIVDKHLQLLAPQHLETRFVKINVERCPFLAQRLRIVVIPTIALV 142          
BLAST of mRNA_L-elsbetiae_contig11918.1647.1 vs. uniprot
Match: A0A7S2FZE2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZE2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.080e-30
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    1 SNGHGRYTELPDQPAFFEATKKSKWMAVHFYRPTTQRCQIVDGHLSRLAEKHLETRFCKIDAEKCPYLTEKLNIFVMPTILLIQGSQTIHQV 276
            SNGHGRY EL DQ  FF+A+K SK + VHFYR TT RCQI+D HL  LA+ H ETRF KID EK P+L EKL I ++PT+L ++ ++T H +
Sbjct:   76 SNGHGRYMELSDQKEFFQASKDSKQLCVHFYRSTTFRCQILDRHLDILAQTHPETRFVKIDVEKAPFLVEKLRIVMLPTLLCVKNAKTEHAI 167          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11918.1647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBP1_9STRA8.470e-3867.39ATP binding protein-like protein n=1 Tax=Tribonema... [more]
A0A6V1PIS8_HETAK1.870e-3466.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1CD91_9STRA2.780e-3355.43Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0B2USW7_TOXCA4.600e-3357.14Thioredoxin domain-containing protein 9-like prote... [more]
A0A7S2XYB6_9STRA5.130e-3359.78Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D6P5_9STRA6.680e-3257.78Thioredoxin domain-containing protein n=3 Tax=Mono... [more]
A0A7S1BMM5_9STRA5.180e-3156.67Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7R8UPG6_HERIL5.200e-3160.23Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
A0A1D1W5V9_RAMVA1.070e-3063.86Thioredoxin domain-containing protein n=1 Tax=Rama... [more]
A0A7S2FZE2_9STRA1.080e-3058.70Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11918contigL-elsbetiae_contig11918:260..1779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score113.2
Seed ortholog evalue6.3e-23
Seed eggNOG ortholog43151.ADAC006801-PA
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0018130,GO:0019438,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.Phosducin
EggNOG OGs39ZXY@33154,3BKC2@33208,3CUX1@33213,3SKTI@50557,41YVB@6656,44YI7@7147,45DCE@7148,COG0526@1,KOG1672@2759
COG Functional cat.CO
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
Exons3
Model size276
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11918.1647.1prot_L-elsbetiae_contig11918.1647.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11918 260..1779 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815393.29521-CDS-L-elsbetiae_contig11918:259..3311622815393.29521-CDS-L-elsbetiae_contig11918:259..331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11918 260..331 +
1691682876.1996088-CDS-L-elsbetiae_contig11918:259..3311691682876.1996088-CDS-L-elsbetiae_contig11918:259..331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11918 260..331 +
1622815393.306839-CDS-L-elsbetiae_contig11918:962..10581622815393.306839-CDS-L-elsbetiae_contig11918:962..1058Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11918 963..1058 +
1691682876.2133212-CDS-L-elsbetiae_contig11918:962..10581691682876.2133212-CDS-L-elsbetiae_contig11918:962..1058Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11918 963..1058 +
1622815393.3205702-CDS-L-elsbetiae_contig11918:1671..17791622815393.3205702-CDS-L-elsbetiae_contig11918:1671..1779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11918 1672..1779 +
1691682876.222941-CDS-L-elsbetiae_contig11918:1671..17791691682876.222941-CDS-L-elsbetiae_contig11918:1671..1779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11918 1672..1779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11918.1647.1

>prot_L-elsbetiae_contig11918.1647.1 ID=prot_L-elsbetiae_contig11918.1647.1|Name=mRNA_L-elsbetiae_contig11918.1647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
SNGHGRYTELPDQPAFFEATKKSKWMAVHFYRPTTQRCQIVDGHLSRLAE
KHLETRFCKIDAEKCPYLTEKLNIFVMPTILLIQGSQTIHQV
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mRNA from alignment at L-elsbetiae_contig11918:260..1779+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11918.1647.1 ID=mRNA_L-elsbetiae_contig11918.1647.1|Name=mRNA_L-elsbetiae_contig11918.1647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1520bp|location=Sequence derived from alignment at L-elsbetiae_contig11918:260..1779+ (Laminarionema elsbetiae ELsaHSoW15)
TCAAACGGCCACGGGAGATACACAGAGCTGCCCGACCAGCCTGCCTTCTT CGAGGCGACCAAGAAGAGCAAGGTCAGTCAGCTTGTGTTGGACTAAATAC TGTTTCACCATCTTCCTTCTTTTTTTTTTTTTTTAGTGTGTCGGCGCGTG CCTCTCGGTCCTCCTCGCTCTGCCGTGCCGAATTGTTCGGTTTTCTTGCA CTGACTGAGGCAGGCAAGGTGGTGTGAGTGTTTGTGGTGCCCGCTGTCTG TGTGCGTGTGCTGACCTGTGCCTGGCACGGCCGCGGTGCCGTTGTTGCGT GCGGCCTCAGCAGACAAGACTGGACACGAGGAGCTAAAAAAGAGGATCCC TTTTTGCCGCTCTTTTTTTTGGCGCTGCTCGCGGACCATTTTTTATTCCA TTATTCGTACAAATACAAACGCAAAGCCTGAGTGCGGAGAGAATTGACGT GTGTTGCTGATCCTGTTCTGTCTCATGGTACGCGTGCCCGTGCCCGTGTG CGTGTCTACTGCTGCGTCTCTGTGGGTTCTGGTCTGGTTCTGGTTCTGGT TTGGTTCTGGTTGTGGGTTCTGGTCTGGTTCTGGTTTGGTTTGGTTTGGT CTGGTGTGGTCTGGTCTGGTCTGGTCTGGTCTGGTCTGGTCTGGTCTGAT CTGGTCTGGTCTGTCCGCCCGCCGCCCGCCCGTGTTTTCCCCCGTCTCTG CAGTGGATGGCGGTGCACTTCTACCGGCCGACGACGCAGAGATGCCAGAT CGTTGACGGTCACCTCAGTCGCCTCGCCGAGAAGCATCTAGAGACAAGGG TGAGCTGCTGCTGCTGCTGGCCTACTGCACAGCTTTTGTATTTATTCACT CGATTGTTGATCGATTGCTGACCTACTGCTGCTTGCTGCTGCTGTTCGGT TCGGTTCGGTTCGGTTCGGTTGTGTCTGATGTTCCGAGCCGCGTCGTTGT TGTTGTTACGCCGCGGGTTCGGCAACACCGGGGGTGAGAGGCACAGGGGG GGGGGGGGGGGGGGGGGGGGCAGGGGGGCTGTGTGTGCCTCCTTTCCCCT CCCTCGTTTGTTTCTTCTCCGGCAGCGGCCGCAGAGGAATACCATAAGCA AGAAGCTATGTAGCATCCCGCACTGGACTCTTGTGCCCGCACGCCTCTCT GTATTTTAAGGTGCATAGCGGTTCCGGAACCCCTGTCCATTATTTCCTAT GTAGAAAGGAGTTTTTCGCGAAGGCGGCCCCTCAGATAGAGGCATCGCTG AGTATACGCCCCACCCCCCTCTCACCCGGCCTGCCTCCCTCGCTTTCTCT CGCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCTTTCCTCCCCC CCCCCCCCCCCTCCCCCCCCCCCCCCCCCGTCCTTTTTTGGTTGCGACGC CTGTTTCTGCAGTTCTGCAAGATCGACGCGGAGAAGTGCCCCTACCTCAC CGAGAAGCTCAACATCTTCGTCATGCCCACGATCCTTCTCATCCAGGGCA GCCAGACTATACATCAGGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11918:260..1779+

>mRNA_L-elsbetiae_contig11918.1647.1 ID=mRNA_L-elsbetiae_contig11918.1647.1|Name=mRNA_L-elsbetiae_contig11918.1647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig11918:260..1779+ (Laminarionema elsbetiae ELsaHSoW15)
TCAAACGGCCACGGGAGATACACAGAGCTGCCCGACCAGCCTGCCTTCTT
CGAGGCGACCAAGAAGAGCAAGTCAAACGGCCACGGGAGATACACAGAGC
TGCCCGACCAGCCTGCCTTCTTCGAGGCGACCAAGAAGAGCAAGTGGATG
GCGGTGCACTTCTACCGGCCGACGACGCAGAGATGCCAGATCGTTGACGG
TCACCTCAGTCGCCTCGCCGAGAAGCATCTAGAGACAAGGTGGATGGCGG
TGCACTTCTACCGGCCGACGACGCAGAGATGCCAGATCGTTGACGGTCAC
CTCAGTCGCCTCGCCGAGAAGCATCTAGAGACAAGGTTCTGCAAGATCGA
CGCGGAGAAGTGCCCCTACCTCACCGAGAAGCTCAACATCTTCGTCATGC
CCACGATCCTTCTCATCCAGGGCAGCCAGACTATACATCAGGTCTTCTGC
AAGATCGACGCGGAGAAGTGCCCCTACCTCACCGAGAAGCTCAACATCTT
CGTCATGCCCACGATCCTTCTCATCCAGGGCAGCCAGACTATACATCAGG
TC
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