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Homology
BLAST of mRNA_L-elsbetiae_contig11908.1640.1 vs. uniprot
Match: A0A6H5JJF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF4_9PHAE) HSP 1 Score: 330 bits (846), Expect = 2.760e-108 Identity = 188/310 (60.65%), Postives = 226/310 (72.90%), Query Frame = 3
Query: 3 KQNMAPMPNPDWYKDNDDTRVSLKNLRELPLSVHVEVWSSTLRWYRDSFEQSFAWGKKRKEEAEKKEAQEKLDVLQGMVKDAREATHNTPEDLAESKKALRELLEEIHANQDGLKSAAQEKLDLIRVSLSEFSAGYREARDEEIKRVMAMDQSVLKSFLSERADEVKHATSMISDAILDKDKGMDRDGSDRSGRSKASQPVSARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGAAAAEVNPGTGPEGEKEEEEGGAVGPSRFLSHRTRQAVDDVLRDPDLERLAGRARGFARERLLQAEAAARVL 932
KQNMAP+PNP+WY++ DTRV+ KNLR+LPLSVH E+WSST +WYR SF +SFAW +KRKEEA+K+EA EK+ LQGMVK+ARE THN+PEDL +SK+AL+EL+EEIH N+D LKSAAQEKLDLIRVSLSEFS GYREARDEEIKRVMAMD+S+++SFLSERA EVKHATS+I+DAIL+KD D S R + Q SA T A+ AE +P P + +GGA RFLS R R+AVDDVLRDPD+ERLAGRA+GFARERLL+AE AAR++
Sbjct: 19 KQNMAPLPNPEWYEEGKDTRVTFKNLRKLPLSVHTEIWSSTWKWYRASFAESFAWSRKRKEEAKKREAHEKMSTLQGMVKEAREITHNSPEDLEKSKEALKELMEEIHENRDELKSAAQEKLDLIRVSLSEFSTGYREARDEEIKRVMAMDKSMIQSFLSERAGEVKHATSVIADAILEKD----GDAGGSSSREEGEQSSSAMRSAPAPPSHNNAAPCVSSVGRPQERPGTVSSTTAASDAESHPNNDPG--HADLDGGAT---RFLSPRARRAVDDVLRDPDVERLAGRAKGFARERLLKAEEAARII 319
BLAST of mRNA_L-elsbetiae_contig11908.1640.1 vs. uniprot
Match: D8LCT5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT5_ECTSI) HSP 1 Score: 316 bits (810), Expect = 1.360e-104 Identity = 179/301 (59.47%), Postives = 219/301 (72.76%), Query Frame = 3
Query: 12 MAPMPNPDWYKDNDDTRVSLKNLRELPLSVHVEVWSSTLRWYRDSFEQSFAWGKKRKEEAEKKEAQEKLDVLQGMVKDAREATHNTPEDLAESKKALRELLEEIHANQDGLKSAAQEKLDLIRVSLSEFSAGYREARDEEIKRVMAMDQSVLKSFLSERADEVKHATSMISDAILDKDKGMDRDGSDRSGRSKASQPVSARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTGAAAAEVNPGTGPEGEKEEEEGGAVGPSRFLSHRTRQAVDDVLRDPDLERLAGRARGFARERLLQAE 914
MAP+PNP+WY++ DTRV+ KNLR+LPLSVH E+WSST +WYR+SF +SFAW +KRKEEA+K+EA EK++ L+GMVK+ARE THN+PEDL +SK+AL+EL+EEIH N+D LKSAAQEKLDLIRVSLSEFS GYR+ARDEEIKRVMAMD+S+L+SFLSERA EVKHATS+I+DAIL+KD G S R + + A T A+ AE +P P + +GGA RFLS R R+AVDDVLRDPD+ERLAGRA+GFARERLL+AE
Sbjct: 1 MAPLPNPEWYEEGKDTRVTFKNLRKLPLSVHTEIWSSTWKWYRESFAESFAWSRKRKEEAKKREAHEKMNTLRGMVKEAREVTHNSPEDLEKSKEALKELMEEIHENRDELKSAAQEKLDLIRVSLSEFSTGYRQARDEEIKRVMAMDKSMLQSFLSERAGEVKHATSLIADAILEKDGGA----GGSSSREEGGRSSPALRSAPAPPSINNAAPDASSVARPREQPGTVSSTTAASDAESHPSNDPG--HADLDGGAT---RFLSPRARRAVDDVLRDPDVERLAGRAKGFARERLLKAE 292
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-07_006830.1 |
Exons | 5 |
Model size | 946 |
Cds size | 933 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815392.363352-UTR-L-elsbetiae_contig11908:1791..1802 | 1622815392.363352-UTR-L-elsbetiae_contig11908:1791..1802 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig11908 1792..1802 + |
1691682875.7401667-UTR-L-elsbetiae_contig11908:1791..1802 | 1691682875.7401667-UTR-L-elsbetiae_contig11908:1791..1802 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig11908 1792..1802 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815392.3797019-CDS-L-elsbetiae_contig11908:1802..1873 | 1622815392.3797019-CDS-L-elsbetiae_contig11908:1802..1873 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11908 1803..1873 + |
1691682875.7540658-CDS-L-elsbetiae_contig11908:1802..1873 | 1691682875.7540658-CDS-L-elsbetiae_contig11908:1802..1873 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11908 1803..1873 + |
1622815392.3906848-CDS-L-elsbetiae_contig11908:2206..2399 | 1622815392.3906848-CDS-L-elsbetiae_contig11908:2206..2399 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11908 2207..2399 + |
1691682875.7633038-CDS-L-elsbetiae_contig11908:2206..2399 | 1691682875.7633038-CDS-L-elsbetiae_contig11908:2206..2399 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11908 2207..2399 + |
1622815392.4020612-CDS-L-elsbetiae_contig11908:3456..3507 | 1622815392.4020612-CDS-L-elsbetiae_contig11908:3456..3507 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11908 3457..3507 + |
1691682875.7715826-CDS-L-elsbetiae_contig11908:3456..3507 | 1691682875.7715826-CDS-L-elsbetiae_contig11908:3456..3507 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11908 3457..3507 + |
1622815392.415885-CDS-L-elsbetiae_contig11908:4051..4146 | 1622815392.415885-CDS-L-elsbetiae_contig11908:4051..4146 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11908 4052..4146 + |
1691682875.7803094-CDS-L-elsbetiae_contig11908:4051..4146 | 1691682875.7803094-CDS-L-elsbetiae_contig11908:4051..4146 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11908 4052..4146 + |
1622815392.426047-CDS-L-elsbetiae_contig11908:5233..5756 | 1622815392.426047-CDS-L-elsbetiae_contig11908:5233..5756 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11908 5234..5756 + |
1691682875.7895083-CDS-L-elsbetiae_contig11908:5233..5756 | 1691682875.7895083-CDS-L-elsbetiae_contig11908:5233..5756 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11908 5234..5756 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11908.1640.1 >prot_L-elsbetiae_contig11908.1640.1 ID=prot_L-elsbetiae_contig11908.1640.1|Name=mRNA_L-elsbetiae_contig11908.1640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=311bp
MAPMPNPDWYKDNDDTRVSLKNLRELPLSVHVEVWSSTLRWYRDSFEQSF AWGKKRKEEAEKKEAQEKLDVLQGMVKDAREATHNTPEDLAESKKALREL LEEIHANQDGLKSAAQEKLDLIRVSLSEFSAGYREARDEEIKRVMAMDQS VLKSFLSERADEVKHATSMISDAILDKDKGMDRDGSDRSGRSKASQPVSA RAASGATGAVRQEPPPPPSGWPGAAGAAPGADGTGAAAAEVNPGTGPEGE KEEEEGGAVGPSRFLSHRTRQAVDDVLRDPDLERLAGRARGFARERLLQA EAAARVLKEEP back to topmRNA from alignment at L-elsbetiae_contig11908:1792..5756+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig11908.1640.1 ID=mRNA_L-elsbetiae_contig11908.1640.1|Name=mRNA_L-elsbetiae_contig11908.1640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3965bp|location=Sequence derived from alignment at L-elsbetiae_contig11908:1792..5756+ (Laminarionema elsbetiae ELsaHSoW15) GCAAGCAAAACATGGCGCCGATGCCAAACCCTGACTGGTACAAGGACAAT
GACGACACTAGGGTCAGCCTCAAGAATTTGCGGTAAGAACCAGATGGGAG
CCTGGGTGCAAGCAAAGGCCAGATGAACGATAGCAGTGCCATATTTCGTA
TTCCCCGTCTGGCGAGTGCGCTCTCGGGGCGTGCGTGGTGTCGCCTTTTT
GGTTTGATTCCTTTGGGGGCGACGTGTCGAGGGGGGGGTCGGAAATACAG
CCTGCTTTAGGGGCATGCGTCCGCGAGGCAGATCTTAGCACAAGCATCTC
GTGCTTGATTAGAGCCCCCGCTGTGCTGCTGTCTTGCTCGTCTGCCGTTT
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCCGCTGCTGCCGTG
TACCACCGACGTCAGCGAGCTGCCGCTGTCGGTGCACGTCGAGGTCTGGT
CCTCGACCTTAAGGTGGTACCGAGATTCGTTCGAGCAGTCCTTCGCCTGG
GGCAAGAAGCGCAAGGAAGAGGCCGAGAAGAAGGAGGCCCAGGAGAAGTT
AGACGTGCTTCAGGGCATGGTCAAGGATGCCCGTGAAGCCACGCACAACA
CCCCCGAGGTGGGTTTGGGTCTGGGCAGCCCTGCAAGCAAGCTCTCGTGT
CTCGTCTCACAGCCTTGTCAGAATCCAGGTGTCCTCGTCTCATCGTCTCA
TGTCGCGTGTCTAATTTTACGGGCTAGTCAGAATTAATGTGTCTTCGCTG
TTGTTTTTTTTTTTTCACATTAGCTAATATCGTATAATCGAGATGTTAAT
TTAGTCCCAAAAAATCTAGCAATTCACGGCCCGTGGTCACAAAAGTGCCT
GAGCCATCAAAAGATCCGAAAGAAACACACGCAGGGAATGAAAACTACAC
AGAAAGGCCGACTTCGGGTTGTAGGGTTTGGTCTCATCGTCTGATCTCAC
GGGTCTCACTCATCTCAAAGTCTCATTGAAGCTCATGTGTCTCGCCTCAT
GAGCTGGTCTCGCCTGCGCCACCTCATCCTCTCATCGTAAGTCATGTGTC
TCGTCTCCTGGTCTCACCCCATCATCTCGGCCACCATCTCATCAGAAGTA
ATGCGCCTCGTCTCATGTGTCCCATGCGTACCTCCGGTTCGCCTCTCGGA
CAGAGGTCGATGCGGGGCGTGGCCTGGACCAGATCGACAACATGTCAGAA
CCCTTCGGCTTCGTTTTGTTTTCTTAAACCCTTTGCAACGCCAAGAAATA
TTTATTTAATTGCAAGGCTGTGATTGGATCTTACTCGCACAGTCCCTGAT
GCAGACTCCTTGTCTATAACCCCTATCATTTGGCCCCAAATCGATTTCGG
GGCCAAATGATATACCTTTATGGGGCACCCGTTCTAAACTGGTGTCGAAA
AGTTTGTTTTATGACTTGGGGACTTGGGGCCATAATGTGGTCCCAAATGC
TTTGTGGTCCTAAAGGGGTTAAAAATAAACAATGAATCAAAGATTCGTTT
TGTTTTCTTCCATGGTAGATACATAAATGCATACATACGTAGTGACTGGA
TTCATGTTGTTTTGCCTTGGCTGAAATAGCTGTTTGTGACGAAGCCCTGC
CCTGCCAACCCTTGTTGTGCACGTCTTGTTCCCTGTTGATACGCGCCCTC
CCGCACTCTTCGCAGGACCTGGCAGAGTCCAAGAAGGCGCTAAGGGAGCT
GCTGGAGGAGATTCACGTGAGGTTCTCCCCGTGGATTGACCGCCTGCAGC
CGTGGCTGGCTGCCTTTTGTCTGCCGCGTTCCTTTCAGTTGCCGCGCGTT
TACTTGTGCTCTCTGTTTCCTCGGTCGTAGTTTGGCCGGCCCCGCACTTG
GTGTAGCGTAACACCAGGCCGACAGAGTATATCGCTATGTAACATTGATG
TACCACGTGTATATGTTTAGTGTTGAGTTGTGTGTTTTGGTTGATTCTCT
CTGATTTTTTCTTGTCTCTCACAAGTGCTGTCCCAAACTCGCAGAGCGAG
ACGCCAGACGGCCACATTCAAGGCAGCGTTTTGTGTTAAATTAGGCACTA
GGTACCTGTTCCTGCTACACACACACACACACACACACACACGTAGACAT
AGAACAGCGTAGAAACATAAAGTGTTTGCCTTTTTTACTTGCTTTTCTTA
TGGGCCATGCACACACACACACACACATCCATAGAGAACAGCGTCGAAAC
CATGATCTGTTTTCCCCTATTTATGCTTTGCTTTGCTTTTCTTATTTTAT
TTTCTGGCAGGCCAACCAAGACGGGCTCAAGTCGGCGGCGCAGGAAAAAC
TGGACTTGATTCGAGTCTCTCTCTCCGAGTTTTCGGCGGGCTATCGAGAG
GCCCGGTGAGAGCGAAAGGACGACACCCCTACCCCCCTTCCTCCCCCGGC
CCCCCTTTACTTCTAAACGTCAGCCGTCTTGCCCAGCCTGTGCAAAAATT
ATTTCCAGGGAAAATCTTAAGGGGGGCGAGCACCGCAGAAGGGGGGATTG
AGGGGGCTCGGGGAAAGGAACCCTTCTGTGTGACCACGGTTCAGTACTCC
GGCAAGATTCCCTCGTGACAAGGAGCCCATCGAGCACTGGAAATAAATAC
GAAGAAGAAAAAAAGAAAAAAGAAAGGAAACTGCTGTGGTGGGCCCTCAA
AACCCTCCCTCACCGCCCCCAGCTAATATGTCACGAAAAAATCGGCAAAC
CGTGTATTTTTTAATTAATACTGTTTTTTTTGGGGTTTCTTGGCGTCGTA
TACGTATGGTTGTGTGTGTTTATCGTACGTATGTATGGGGAAGGGGTTGG
TTGTCCCGCACACGCTTCATTGGGCTATGTATTCGTGTGCCACCCTCGTT
TATTCTGGAGGGATACCGCACGGAGAGAGATGATCCTGACGAGGAACTCG
GGGTTGACTGAGGTTATAGGGGTGGCTGCACTTTTTCTTCGTCGAGTGAG
GCGCACGCACACGTGTGTACTGCTGCGAAGAGAGCCAGCCCTAAAAAGAT
GAAAAACGACGTTCATATGTATGTGTGTATCGTATGCTTTCTTGCTGGCC
CGACGACAAAAGCCATTTCCCGCTTTCGTCTTGTCGCTGCTGCACAGCAG
ATTTGCTGTGGGTCCACAACCGCCCACCTAGACTTCAGCGTGCCCCTTTG
GAGGTACATTTTTTTTTTCGTCCATCGTTGGCATATTTGGGTCAGGTTCA
GGGTTAGGGTTATACCTGTGTGACCCCGGTTGGGTCGTCTAGCTAGTCGT
AGTGGAGGAAGGGGGCCAGTGGGGCAGACGACGAACAGGCCAATAACGGC
AGTAACGGGAGGAGAAAATAAAACAAAAACTACGTATGTACTTGTACATA
TTTAATTTACACACATGTGTACATCGATATTTATCTCGGAGTTTGTATAG
CCCCTGACGCTTCTCTCCTTCCGTTGCGGGTGGCGTTGGCAGGGACGAGG
AGATAAAGCGCGTCATGGCGATGGACCAGAGCGTGCTGAAGAGCTTCCTG
AGCGAGAGGGCGGACGAGGTGAAGCACGCCACCTCCATGATATCCGACGC
GATCCTGGACAAAGACAAGGGCATGGACAGGGATGGCAGCGACCGCAGTG
GCCGCAGCAAAGCGAGCCAGCCGGTCTCCGCAAGAGCCGCGAGCGGGGCA
ACGGGAGCAGTAAGACAAGAACCGCCGCCGCCGCCGTCAGGATGGCCGGG
CGCGGCGGGAGCGGCGCCAGGGGCCGACGGGACCGGGGCAGCAGCGGCGG
AGGTAAACCCCGGCACGGGGCCCGAAGGCGAGAAAGAAGAGGAGGAGGGG
GGCGCCGTTGGACCGAGTCGGTTCCTGTCTCACCGCACGCGGCAGGCCGT
GGACGACGTCCTCCGGGACCCCGACCTGGAGCGGCTCGCCGGCAGAGCCA
GAGGCTTCGCGAGGGAGAGGCTGCTGCAGGCGGAAGCCGCCGCGCGAGTG
CTCAAGGAAGAGCCA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig11908:1792..5756+ >mRNA_L-elsbetiae_contig11908.1640.1 ID=mRNA_L-elsbetiae_contig11908.1640.1|Name=mRNA_L-elsbetiae_contig11908.1640.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1866bp|location=Sequence derived from alignment at L-elsbetiae_contig11908:1792..5756+ (Laminarionema elsbetiae ELsaHSoW15) ATGGCGCCGATGCCAAACCCTGACTGGTACAAGGACAATGACGACACTAG GGTCAGCCTCAAGAATTTGCGATGGCGCCGATGCCAAACCCTGACTGGTA CAAGGACAATGACGACACTAGGGTCAGCCTCAAGAATTTGCGCGAGCTGC CGCTGTCGGTGCACGTCGAGGTCTGGTCCTCGACCTTAAGGTGGTACCGA GATTCGTTCGAGCAGTCCTTCGCCTGGGGCAAGAAGCGCAAGGAAGAGGC CGAGAAGAAGGAGGCCCAGGAGAAGTTAGACGTGCTTCAGGGCATGGTCA AGGATGCCCGTGAAGCCACGCACAACACCCCCGAGCGAGCTGCCGCTGTC GGTGCACGTCGAGGTCTGGTCCTCGACCTTAAGGTGGTACCGAGATTCGT TCGAGCAGTCCTTCGCCTGGGGCAAGAAGCGCAAGGAAGAGGCCGAGAAG AAGGAGGCCCAGGAGAAGTTAGACGTGCTTCAGGGCATGGTCAAGGATGC CCGTGAAGCCACGCACAACACCCCCGAGGACCTGGCAGAGTCCAAGAAGG CGCTAAGGGAGCTGCTGGAGGAGATTCACGACCTGGCAGAGTCCAAGAAG GCGCTAAGGGAGCTGCTGGAGGAGATTCACGCCAACCAAGACGGGCTCAA GTCGGCGGCGCAGGAAAAACTGGACTTGATTCGAGTCTCTCTCTCCGAGT TTTCGGCGGGCTATCGAGAGGCCCGGCCAACCAAGACGGGCTCAAGTCGG CGGCGCAGGAAAAACTGGACTTGATTCGAGTCTCTCTCTCCGAGTTTTCG GCGGGCTATCGAGAGGCCCGGGACGAGGAGATAAAGCGCGTCATGGCGAT GGACCAGAGCGTGCTGAAGAGCTTCCTGAGCGAGAGGGCGGACGAGGTGA AGCACGCCACCTCCATGATATCCGACGCGATCCTGGACAAAGACAAGGGC ATGGACAGGGATGGCAGCGACCGCAGTGGCCGCAGCAAAGCGAGCCAGCC GGTCTCCGCAAGAGCCGCGAGCGGGGCAACGGGAGCAGTAAGACAAGAAC CGCCGCCGCCGCCGTCAGGATGGCCGGGCGCGGCGGGAGCGGCGCCAGGG GCCGACGGGACCGGGGCAGCAGCGGCGGAGGTAAACCCCGGCACGGGGCC CGAAGGCGAGAAAGAAGAGGAGGAGGGGGGCGCCGTTGGACCGAGTCGGT TCCTGTCTCACCGCACGCGGCAGGCCGTGGACGACGTCCTCCGGGACCCC GACCTGGAGCGGCTCGCCGGCAGAGCCAGAGGCTTCGCGAGGGAGAGGCT GCTGCAGGCGGAAGCCGCCGCGCGAGTGCTCAAGGAAGAGCCAGGACGAG GAGATAAAGCGCGTCATGGCGATGGACCAGAGCGTGCTGAAGAGCTTCCT GAGCGAGAGGGCGGACGAGGTGAAGCACGCCACCTCCATGATATCCGACG CGATCCTGGACAAAGACAAGGGCATGGACAGGGATGGCAGCGACCGCAGT GGCCGCAGCAAAGCGAGCCAGCCGGTCTCCGCAAGAGCCGCGAGCGGGGC AACGGGAGCAGTAAGACAAGAACCGCCGCCGCCGCCGTCAGGATGGCCGG GCGCGGCGGGAGCGGCGCCAGGGGCCGACGGGACCGGGGCAGCAGCGGCG GAGGTAAACCCCGGCACGGGGCCCGAAGGCGAGAAAGAAGAGGAGGAGGG GGGCGCCGTTGGACCGAGTCGGTTCCTGTCTCACCGCACGCGGCAGGCCG TGGACGACGTCCTCCGGGACCCCGACCTGGAGCGGCTCGCCGGCAGAGCC AGAGGCTTCGCGAGGGAGAGGCTGCTGCAGGCGGAAGCCGCCGCGCGAGT GCTCAAGGAAGAGCCA back to top
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