mRNA_L-elsbetiae_contig11904.1637.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11904.1637.1
Unique NamemRNA_L-elsbetiae_contig11904.1637.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11904.1637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11904contigL-elsbetiae_contig11904:732..1467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size736
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11904.1637.1prot_L-elsbetiae_contig11904.1637.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11904 774..1232 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815392.156892-UTR-L-elsbetiae_contig11904:731..7731622815392.156892-UTR-L-elsbetiae_contig11904:731..773Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11904 732..773 +
1691682875.6403587-UTR-L-elsbetiae_contig11904:731..7731691682875.6403587-UTR-L-elsbetiae_contig11904:731..773Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11904 732..773 +
1622815392.191256-UTR-L-elsbetiae_contig11904:1232..14671622815392.191256-UTR-L-elsbetiae_contig11904:1232..1467Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11904 1233..1467 +
1691682875.6603012-UTR-L-elsbetiae_contig11904:1232..14671691682875.6603012-UTR-L-elsbetiae_contig11904:1232..1467Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11904 1233..1467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815392.175022-CDS-L-elsbetiae_contig11904:773..12321622815392.175022-CDS-L-elsbetiae_contig11904:773..1232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11904 774..1232 +
1691682875.650814-CDS-L-elsbetiae_contig11904:773..12321691682875.650814-CDS-L-elsbetiae_contig11904:773..1232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11904 774..1232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11904.1637.1

>prot_L-elsbetiae_contig11904.1637.1 ID=prot_L-elsbetiae_contig11904.1637.1|Name=mRNA_L-elsbetiae_contig11904.1637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
MHAMEQGAIVAQNYQRRPFQARLLRRHRQAVPHGLPETTAGGRWGLVSCG
GEEKCARSHHYSKTNTIVLLAWSDRSGDHGGVDGGLSPDPRGGGSAVHHA
SGTPRDSSTPGSWLADPSCEHPYQWSCLPRPRTENFSESRGDAAATSTLS
AV*
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mRNA from alignment at L-elsbetiae_contig11904:732..1467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11904.1637.1 ID=mRNA_L-elsbetiae_contig11904.1637.1|Name=mRNA_L-elsbetiae_contig11904.1637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=736bp|location=Sequence derived from alignment at L-elsbetiae_contig11904:732..1467+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTTGGAGCAAAAGGCTTTCCACGTTCGAATTAGCCGTCGATGCATGC
GATGGAACAAGGGGCGATTGTTGCACAGAATTACCAACGTCGACCGTTCC
AAGCGCGGCTGCTTCGACGCCACCGACAGGCTGTGCCTCACGGTCTACCG
GAGACGACCGCTGGTGGGCGCTGGGGGCTAGTGTCATGCGGCGGGGAGGA
GAAATGTGCACGGAGTCATCACTACTCGAAGACGAACACGATTGTATTAC
TTGCCTGGAGTGATAGGAGTGGTGACCACGGCGGGGTTGACGGCGGTCTG
TCTCCGGACCCGAGGGGCGGCGGTTCCGCTGTCCATCACGCCTCCGGGAC
TCCTCGAGACAGTAGTACTCCAGGTTCATGGCTTGCCGATCCCTCTTGCG
AGCACCCATACCAGTGGAGCTGCCTCCCGCGCCCGAGGACTGAGAATTTC
AGCGAGAGCCGTGGCGACGCGGCGGCGACGTCGACGCTGTCTGCGGTGTA
GAGACACGGGCGCTGCGCAGGTTGTCAATTAAAGTCAACACAGCTTTTCC
ATCCGTAGCATCTAGCTTCGAAAGGTGCTCGGGGGCCACCAGGTGACTGA
TCAAAGGCTGTGTACCGCGCGGTATAGTGCTGGTCACCGTCGCAGCGAAG
TTGAGCACACGGTAGAAGGCAGACAGACCGGCAGTGTAGTTGTCCCACGA
AATGCGGGGCAGCGATGTGGTGGCATCAAAGGGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11904:732..1467+

>mRNA_L-elsbetiae_contig11904.1637.1 ID=mRNA_L-elsbetiae_contig11904.1637.1|Name=mRNA_L-elsbetiae_contig11904.1637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig11904:732..1467+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGCGATGGAACAAGGGGCGATTGTTGCACAGAATTACCAACGTCG
ACCGTTCCAAGCGCGGCTGCTTCGACGCCACCGACAGGCTGTGCCTCACG
GTCTACCGGAGACGACCGCTGGTGGGCGCTGGGGGCTAGTGTCATGCGGC
GGGGAGGAGAAATGTGCACGGAGTCATCACTACTCGAAGACGAACACGAT
TGTATTACTTGCCTGGAGTGATAGGAGTGGTGACCACGGCGGGGTTGACG
GCGGTCTGTCTCCGGACCCGAGGGGCGGCGGTTCCGCTGTCCATCACGCC
TCCGGGACTCCTCGAGACAGTAGTACTCCAGGTTCATGGCTTGCCGATCC
CTCTTGCGAGCACCCATACCAGTGGAGCTGCCTCCCGCGCCCGAGGACTG
AGAATTTCAGCGAGAGCCGTGGCGACGCGGCGGCGACGTCGACGCTGTCT
GCGGTGTAGATGCATGCGATGGAACAAGGGGCGATTGTTGCACAGAATTA
CCAACGTCGACCGTTCCAAGCGCGGCTGCTTCGACGCCACCGACAGGCTG
TGCCTCACGGTCTACCGGAGACGACCGCTGGTGGGCGCTGGGGGCTAGTG
TCATGCGGCGGGGAGGAGAAATGTGCACGGAGTCATCACTACTCGAAGAC
GAACACGATTGTATTACTTGCCTGGAGTGATAGGAGTGGTGACCACGGCG
GGGTTGACGGCGGTCTGTCTCCGGACCCGAGGGGCGGCGGTTCCGCTGTC
CATCACGCCTCCGGGACTCCTCGAGACAGTAGTACTCCAGGTTCATGGCT
TGCCGATCCCTCTTGCGAGCACCCATACCAGTGGAGCTGCCTCCCGCGCC
CGAGGACTGAGAATTTCAGCGAGAGCCGTGGCGACGCGGCGGCGACGTCG
ACGCTGTCTGCGGTGTAG
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