mRNA_L-elsbetiae_contig11902.1636.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11902.1636.1
Unique NamemRNA_L-elsbetiae_contig11902.1636.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11902.1636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11902contigL-elsbetiae_contig11902:3300..4479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1180
Cds size921
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11902.1636.1prot_L-elsbetiae_contig11902.1636.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11902 3359..4279 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815392.093719-UTR-L-elsbetiae_contig11902:3299..33581622815392.093719-UTR-L-elsbetiae_contig11902:3299..3358Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11902 3300..3358 +
1691682875.61177-UTR-L-elsbetiae_contig11902:3299..33581691682875.61177-UTR-L-elsbetiae_contig11902:3299..3358Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11902 3300..3358 +
1622815392.1133795-UTR-L-elsbetiae_contig11902:4279..44791622815392.1133795-UTR-L-elsbetiae_contig11902:4279..4479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11902 4280..4479 +
1691682875.6301594-UTR-L-elsbetiae_contig11902:4279..44791691682875.6301594-UTR-L-elsbetiae_contig11902:4279..4479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11902 4280..4479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815392.1038256-CDS-L-elsbetiae_contig11902:3358..42791622815392.1038256-CDS-L-elsbetiae_contig11902:3358..4279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11902 3359..4279 +
1691682875.6220164-CDS-L-elsbetiae_contig11902:3358..42791691682875.6220164-CDS-L-elsbetiae_contig11902:3358..4279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11902 3359..4279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11902.1636.1

>prot_L-elsbetiae_contig11902.1636.1 ID=prot_L-elsbetiae_contig11902.1636.1|Name=mRNA_L-elsbetiae_contig11902.1636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp
MAAEDSELSGFSKHNSGQATMAANRKGCRAAASTVRSSPLSLALVAPVTD
ALARTISGESAAPGSAEHGSASPALSSVGHASSAPSVAHIGGGRGGEGLP
PASVVQAFPQPPPPPLQRRTSDLAMLMMTASSWEGCDSSGRPVVGHPLQA
PLVPRAVSHEHGEGGGDGDGQAPARRLDCAVAATMASIRTPLTREGSLIL
AIEAVTAAFGGGGGGGDPFDGDLRRPLSREESLLRAVEVVTARSGDGGGG
SGGDDDADFEKAAAELIASVGLVHVDAGDGDDEAFCGVVAGGAESGIGGD
VVVSAW*
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mRNA from alignment at L-elsbetiae_contig11902:3300..4479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11902.1636.1 ID=mRNA_L-elsbetiae_contig11902.1636.1|Name=mRNA_L-elsbetiae_contig11902.1636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1180bp|location=Sequence derived from alignment at L-elsbetiae_contig11902:3300..4479+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAAGAGGAGCATGGGCGTCAACCGTCAGGGGGGCAGCAGTCCCTGGGA
TCCTTGCTGATGGCCGCAGAAGACAGCGAGCTCAGCGGGTTCTCCAAGCA
CAACAGCGGCCAAGCCACGATGGCCGCCAACCGTAAGGGCTGCCGCGCCG
CCGCCAGCACCGTCCGATCCTCTCCGTTGAGCCTAGCTCTTGTTGCTCCC
GTCACGGACGCGCTAGCACGGACCATTTCCGGGGAGTCTGCTGCCCCCGG
CAGTGCTGAGCACGGCTCCGCGTCGCCTGCACTATCCTCCGTCGGCCATG
CCTCGTCGGCGCCAAGCGTCGCGCACATCGGTGGTGGCCGCGGCGGTGAA
GGGTTGCCCCCGGCGTCAGTTGTCCAGGCGTTCCCGCAGCCCCCCCCCCC
GCCGCTGCAGAGGCGCACGTCCGACCTCGCGATGCTCATGATGACGGCGT
CATCGTGGGAGGGCTGTGACTCGTCAGGGCGGCCGGTCGTAGGACACCCG
CTACAGGCGCCGCTTGTCCCGCGGGCCGTGTCCCACGAGCACGGCGAAGG
GGGAGGGGACGGCGACGGCCAGGCGCCCGCCCGCAGGCTCGACTGCGCGG
TGGCGGCGACCATGGCCAGCATACGCACGCCGCTCACCCGCGAGGGATCG
CTCATCCTCGCCATCGAGGCTGTCACTGCCGCCTTCGGCGGCGGCGGCGG
CGGCGGCGATCCCTTCGACGGCGACCTGCGCAGGCCGCTCTCCCGCGAGG
AGTCTCTCCTGCGGGCGGTAGAGGTCGTCACCGCTCGCTCCGGAGACGGC
GGCGGCGGCAGCGGTGGCGACGATGACGCCGACTTCGAGAAGGCTGCGGC
GGAGCTGATCGCGAGCGTCGGCCTCGTGCACGTGGACGCCGGGGACGGCG
ACGATGAGGCCTTCTGCGGCGTCGTTGCCGGGGGGGCCGAGAGCGGCATC
GGCGGCGACGTGGTCGTTTCGGCGTGGTGAGAGCGGTGGCGAGCACGGCG
ACGCCGGTGCTTGCGTCGGGGTCTTGTCTCGGGCCTCTTGCCGCGGCGGT
TTTGACCGTAAAGTATAAAGCGGGCGGCTTCCGGCGGACTCCGCTCTGGG
GCGGGTTCGGGCTGTTGTATATTTTGACGGCTTCGGGGATGCTTCTTTGA
CAGTTTTCTCGTTGAGAGAGAGAGAGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11902:3300..4479+

>mRNA_L-elsbetiae_contig11902.1636.1 ID=mRNA_L-elsbetiae_contig11902.1636.1|Name=mRNA_L-elsbetiae_contig11902.1636.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1842bp|location=Sequence derived from alignment at L-elsbetiae_contig11902:3300..4479+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCAGAAGACAGCGAGCTCAGCGGGTTCTCCAAGCACAACAGCGG
CCAAGCCACGATGGCCGCCAACCGTAAGGGCTGCCGCGCCGCCGCCAGCA
CCGTCCGATCCTCTCCGTTGAGCCTAGCTCTTGTTGCTCCCGTCACGGAC
GCGCTAGCACGGACCATTTCCGGGGAGTCTGCTGCCCCCGGCAGTGCTGA
GCACGGCTCCGCGTCGCCTGCACTATCCTCCGTCGGCCATGCCTCGTCGG
CGCCAAGCGTCGCGCACATCGGTGGTGGCCGCGGCGGTGAAGGGTTGCCC
CCGGCGTCAGTTGTCCAGGCGTTCCCGCAGCCCCCCCCCCCGCCGCTGCA
GAGGCGCACGTCCGACCTCGCGATGCTCATGATGACGGCGTCATCGTGGG
AGGGCTGTGACTCGTCAGGGCGGCCGGTCGTAGGACACCCGCTACAGGCG
CCGCTTGTCCCGCGGGCCGTGTCCCACGAGCACGGCGAAGGGGGAGGGGA
CGGCGACGGCCAGGCGCCCGCCCGCAGGCTCGACTGCGCGGTGGCGGCGA
CCATGGCCAGCATACGCACGCCGCTCACCCGCGAGGGATCGCTCATCCTC
GCCATCGAGGCTGTCACTGCCGCCTTCGGCGGCGGCGGCGGCGGCGGCGA
TCCCTTCGACGGCGACCTGCGCAGGCCGCTCTCCCGCGAGGAGTCTCTCC
TGCGGGCGGTAGAGGTCGTCACCGCTCGCTCCGGAGACGGCGGCGGCGGC
AGCGGTGGCGACGATGACGCCGACTTCGAGAAGGCTGCGGCGGAGCTGAT
CGCGAGCGTCGGCCTCGTGCACGTGGACGCCGGGGACGGCGACGATGAGG
CCTTCTGCGGCGTCGTTGCCGGGGGGGCCGAGAGCGGCATCGGCGGCGAC
GTGGTCGTTTCGGCGTGGTGAATGGCCGCAGAAGACAGCGAGCTCAGCGG
GTTCTCCAAGCACAACAGCGGCCAAGCCACGATGGCCGCCAACCGTAAGG
GCTGCCGCGCCGCCGCCAGCACCGTCCGATCCTCTCCGTTGAGCCTAGCT
CTTGTTGCTCCCGTCACGGACGCGCTAGCACGGACCATTTCCGGGGAGTC
TGCTGCCCCCGGCAGTGCTGAGCACGGCTCCGCGTCGCCTGCACTATCCT
CCGTCGGCCATGCCTCGTCGGCGCCAAGCGTCGCGCACATCGGTGGTGGC
CGCGGCGGTGAAGGGTTGCCCCCGGCGTCAGTTGTCCAGGCGTTCCCGCA
GCCCCCCCCCCCGCCGCTGCAGAGGCGCACGTCCGACCTCGCGATGCTCA
TGATGACGGCGTCATCGTGGGAGGGCTGTGACTCGTCAGGGCGGCCGGTC
GTAGGACACCCGCTACAGGCGCCGCTTGTCCCGCGGGCCGTGTCCCACGA
GCACGGCGAAGGGGGAGGGGACGGCGACGGCCAGGCGCCCGCCCGCAGGC
TCGACTGCGCGGTGGCGGCGACCATGGCCAGCATACGCACGCCGCTCACC
CGCGAGGGATCGCTCATCCTCGCCATCGAGGCTGTCACTGCCGCCTTCGG
CGGCGGCGGCGGCGGCGGCGATCCCTTCGACGGCGACCTGCGCAGGCCGC
TCTCCCGCGAGGAGTCTCTCCTGCGGGCGGTAGAGGTCGTCACCGCTCGC
TCCGGAGACGGCGGCGGCGGCAGCGGTGGCGACGATGACGCCGACTTCGA
GAAGGCTGCGGCGGAGCTGATCGCGAGCGTCGGCCTCGTGCACGTGGACG
CCGGGGACGGCGACGATGAGGCCTTCTGCGGCGTCGTTGCCGGGGGGGCC
GAGAGCGGCATCGGCGGCGACGTGGTCGTTTCGGCGTGGTGA
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