mRNA_L-elsbetiae_contig11902.1635.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11902.1635.1
Unique NamemRNA_L-elsbetiae_contig11902.1635.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11902.1635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11902contigL-elsbetiae_contig11902:2109..3211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1065
Cds size876
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11902.1635.1prot_L-elsbetiae_contig11902.1635.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11902 2132..3045 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815392.0157185-UTR-L-elsbetiae_contig11902:2108..21311622815392.0157185-UTR-L-elsbetiae_contig11902:2108..2131Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11902 2109..2131 +
1691682875.558444-UTR-L-elsbetiae_contig11902:2108..21311691682875.558444-UTR-L-elsbetiae_contig11902:2108..2131Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11902 2109..2131 +
1622815392.0543816-UTR-L-elsbetiae_contig11902:3045..32111622815392.0543816-UTR-L-elsbetiae_contig11902:3045..3211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11902 3046..3211 +
1691682875.5954795-UTR-L-elsbetiae_contig11902:3045..32111691682875.5954795-UTR-L-elsbetiae_contig11902:3045..3211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11902 3046..3211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815392.027699-CDS-L-elsbetiae_contig11902:2131..29411622815392.027699-CDS-L-elsbetiae_contig11902:2131..2941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11902 2132..2941 +
1691682875.5673742-CDS-L-elsbetiae_contig11902:2131..29411691682875.5673742-CDS-L-elsbetiae_contig11902:2131..2941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11902 2132..2941 +
1622815392.0409286-CDS-L-elsbetiae_contig11902:2979..30451622815392.0409286-CDS-L-elsbetiae_contig11902:2979..3045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11902 2980..3045 +
1691682875.5788918-CDS-L-elsbetiae_contig11902:2979..30451691682875.5788918-CDS-L-elsbetiae_contig11902:2979..3045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11902 2980..3045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11902.1635.1

>prot_L-elsbetiae_contig11902.1635.1 ID=prot_L-elsbetiae_contig11902.1635.1|Name=mRNA_L-elsbetiae_contig11902.1635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=292bp
MWQHPPLAVSAPSASLPRRDVCGPIMSPLLAGDSPCSWDRDDASGKLAIS
LPPPPALVLPAASQVSVSAEGQRRNGDGRGQGPLTLFRASSDEHVNGSSG
GGSSSSSSSKRARFSLTPPPPPSTGLASASLSSCHPRGGASAVFSSRSTS
LDGAPSSPSSSPFWASPSSTSIPRDCSSNMNASPQLLSEGEGRGGLTVMT
VPPAASAWNGNGTFEVYGHDSVPAKAMAASAHQGGKVVAAIGRVPSFSGL
LDPPVALPKKLPSPGPLSSRQQQQRRFECRGGGGGGGGGGG*
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mRNA from alignment at L-elsbetiae_contig11902:2109..3211+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11902.1635.1 ID=mRNA_L-elsbetiae_contig11902.1635.1|Name=mRNA_L-elsbetiae_contig11902.1635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1103bp|location=Sequence derived from alignment at L-elsbetiae_contig11902:2109..3211+ (Laminarionema elsbetiae ELsaHSoW15)
AACACCACTACCGGACCAGAGAGATGTGGCAGCACCCGCCGCTCGCGGTG
TCGGCCCCATCGGCCTCGTTGCCGCGCCGAGACGTCTGCGGGCCGATCAT
GAGCCCGTTGCTCGCGGGCGACTCGCCGTGTTCGTGGGACCGCGACGATG
CCTCCGGAAAGCTGGCGATTTCGCTGCCCCCGCCGCCCGCTCTCGTTCTG
CCGGCGGCGAGCCAGGTGTCTGTCAGCGCGGAAGGGCAGCGACGTAACGG
GGACGGCCGCGGGCAAGGGCCCTTGACCCTCTTTCGTGCTTCTTCGGACG
AGCACGTCAACGGCAGCAGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGC
AAGCGCGCAAGGTTCTCCCTCACTCCCCCCCCGCCTCCTTCTACCGGCCT
CGCCTCGGCTTCCTTGTCCTCCTGCCACCCCCGCGGCGGCGCTTCGGCCG
TCTTTTCTTCGAGGTCGACGTCGTTGGACGGAGCCCCTTCTTCCCCGTCG
AGTTCTCCGTTCTGGGCATCTCCGTCGTCGACCTCGATTCCTCGCGATTG
CAGCTCGAATATGAACGCCTCGCCGCAGTTGCTGTCGGAGGGTGAGGGTC
GGGGGGGACTTACCGTGATGACCGTGCCGCCGGCCGCCTCCGCCTGGAAC
GGCAACGGCACCTTCGAGGTTTACGGTCACGACAGCGTGCCGGCAAAGGC
CATGGCTGCGTCTGCACACCAGGGCGGCAAGGTGGTGGCGGCGATAGGCA
GAGTGCCATCGTTCTCGGGGTTGTTGGACCCGCCGGTGGCGCTTCCGAAG
AAGCTGCCGTCGCCGGGTCCGCTCTCCTCGAGGGCTTTGCGTGCTCGAAG
CAGCAGCATCGGCAGCAGCAGCAGCAGCAGCAGCGGAGGTTCGAATGTCG
CGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCTGAGTCTTCGGCCGCT
TCAAATTGGGCTACCGTTGCCGCTATTGCGGCGTCGTGCACCGGCAGGGC
CGATCGTGACGGCGCCGACGACGTCGTGGACGAGTTGGAGGGTTCGTTCG
GGATGCTATTTCCCACAGAAGGTGAATCTCGGCAGCAGCAGAAGCTTACG
GAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11902:2109..3211+

>mRNA_L-elsbetiae_contig11902.1635.1 ID=mRNA_L-elsbetiae_contig11902.1635.1|Name=mRNA_L-elsbetiae_contig11902.1635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1752bp|location=Sequence derived from alignment at L-elsbetiae_contig11902:2109..3211+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCAGCACCCGCCGCTCGCGGTGTCGGCCCCATCGGCCTCGTTGCC
GCGCCGAGACGTCTGCGGGCCGATCATGAGCCCGTTGCTCGCGGGCGACT
CGCCGTGTTCGTGGGACCGCGACGATGCCTCCGGAAAGCTGGCGATTTCG
CTGCCCCCGCCGCCCGCTCTCGTTCTGCCGGCGGCGAGCCAGGTGTCTGT
CAGCGCGGAAGGGCAGCGACGTAACGGGGACGGCCGCGGGCAAGGGCCCT
TGACCCTCTTTCGTGCTTCTTCGGACGAGCACGTCAACGGCAGCAGCGGC
GGCGGCAGCAGCAGCAGCAGCAGCAGCAAGCGCGCAAGGTTCTCCCTCAC
TCCCCCCCCGCCTCCTTCTACCGGCCTCGCCTCGGCTTCCTTGTCCTCCT
GCCACCCCCGCGGCGGCGCTTCGGCCGTCTTTTCTTCGAGGTCGACGTCG
TTGGACGGAGCCCCTTCTTCCCCGTCGAGTTCTCCGTTCTGGGCATCTCC
GTCGTCGACCTCGATTCCTCGCGATTGCAGCTCGAATATGAACGCCTCGC
CGCAGTTGCTGTCGGAGGGTGAGGGTCGGGGGGGACTTACCGTGATGACC
GTGCCGCCGGCCGCCTCCGCCTGGAACGGCAACGGCACCTTCGAGGTTTA
CGGTCACGACAGCGTGCCGGCAAAGGCCATGGCTGCGTCTGCACACCAGG
GCGGCAAGGTGGTGGCGGCGATAGGCAGAGTGCCATCGTTCTCGGGGTTG
TTGGACCCGCCGGTGGCGCTTCCGAAGAAGCTGCCGTCGCCGGGTCCGCT
CTCCTCGAGGATGTGGCAGCACCCGCCGCTCGCGGTGTCGGCCCCATCGG
CCTCGTTGCCGCGCCGAGACGTCTGCGGGCCGATCATGAGCCCGTTGCTC
GCGGGCGACTCGCCGTGTTCGTGGGACCGCGACGATGCCTCCGGAAAGCT
GGCGATTTCGCTGCCCCCGCCGCCCGCTCTCGTTCTGCCGGCGGCGAGCC
AGGTGTCTGTCAGCGCGGAAGGGCAGCGACGTAACGGGGACGGCCGCGGG
CAAGGGCCCTTGACCCTCTTTCGTGCTTCTTCGGACGAGCACGTCAACGG
CAGCAGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAAGCGCGCAAGGT
TCTCCCTCACTCCCCCCCCGCCTCCTTCTACCGGCCTCGCCTCGGCTTCC
TTGTCCTCCTGCCACCCCCGCGGCGGCGCTTCGGCCGTCTTTTCTTCGAG
GTCGACGTCGTTGGACGGAGCCCCTTCTTCCCCGTCGAGTTCTCCGTTCT
GGGCATCTCCGTCGTCGACCTCGATTCCTCGCGATTGCAGCTCGAATATG
AACGCCTCGCCGCAGTTGCTGTCGGAGGGTGAGGGTCGGGGGGGACTTAC
CGTGATGACCGTGCCGCCGGCCGCCTCCGCCTGGAACGGCAACGGCACCT
TCGAGGTTTACGGTCACGACAGCGTGCCGGCAAAGGCCATGGCTGCGTCT
GCACACCAGGGCGGCAAGGTGGTGGCGGCGATAGGCAGAGTGCCATCGTT
CTCGGGGTTGTTGGACCCGCCGGTGGCGCTTCCGAAGAAGCTGCCGTCGC
CGGGTCCGCTCTCCTCGAGGCAGCAGCAGCAGCGGAGGTTCGAATGTCGC
GGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCTGACAGCAGCAGCAGCG
GAGGTTCGAATGTCGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCT
GA
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