mRNA_L-elsbetiae_contig119.1626.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig119.1626.1
Unique NamemRNA_L-elsbetiae_contig119.1626.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig119.1626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig119contigL-elsbetiae_contig119:19133..19513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815389.6613204-UTR-L-elsbetiae_contig119:19132..191561622815389.6613204-UTR-L-elsbetiae_contig119:19132..19156Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig119 19133..19156 +
1691682874.486255-UTR-L-elsbetiae_contig119:19132..191561691682874.486255-UTR-L-elsbetiae_contig119:19132..19156Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig119 19133..19156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815389.6778193-CDS-L-elsbetiae_contig119:19156..195131622815389.6778193-CDS-L-elsbetiae_contig119:19156..19513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig119 19157..19513 +
1691682874.495854-CDS-L-elsbetiae_contig119:19156..195131691682874.495854-CDS-L-elsbetiae_contig119:19156..19513Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig119 19157..19513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig119.1626.1prot_L-elsbetiae_contig119.1626.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig119 19157..19513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig119.1626.1

>prot_L-elsbetiae_contig119.1626.1 ID=prot_L-elsbetiae_contig119.1626.1|Name=mRNA_L-elsbetiae_contig119.1626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MPQQPGVAPQTLVPNQQQHQPQQPFHGQLVGPTQGPYLAQLPGPPMPAHQ
QQMAGPPQWRPPQAPPVGVGGLPVPHLKHVWSSFLPVASSVAGGGPRETS
SKLDEWAASLSGAIASDAQ
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mRNA from alignment at L-elsbetiae_contig119:19133..19513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig119.1626.1 ID=mRNA_L-elsbetiae_contig119.1626.1|Name=mRNA_L-elsbetiae_contig119.1626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=381bp|location=Sequence derived from alignment at L-elsbetiae_contig119:19133..19513+ (Laminarionema elsbetiae ELsaHSoW15)
ATCAGCCAATATCCCGTCGTGAGCATGCCCCAGCAGCCCGGTGTGGCTCC
CCAAACTCTCGTGCCCAATCAGCAGCAACATCAACCGCAGCAACCGTTCC
ACGGGCAGTTGGTGGGGCCGACGCAAGGCCCGTACTTGGCGCAGCTGCCA
GGCCCGCCGATGCCAGCGCACCAGCAGCAGATGGCGGGCCCGCCCCAATG
GCGCCCGCCGCAAGCTCCCCCGGTAGGCGTGGGCGGACTCCCCGTGCCGC
ACCTGAAGCACGTGTGGAGCTCCTTCTTGCCCGTTGCCTCGAGCGTCGCC
GGAGGGGGCCCGAGAGAGACCTCTAGCAAGCTGGACGAGTGGGCCGCGTC
GCTGTCGGGAGCGATCGCCTCGGACGCACAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig119:19133..19513+

>mRNA_L-elsbetiae_contig119.1626.1 ID=mRNA_L-elsbetiae_contig119.1626.1|Name=mRNA_L-elsbetiae_contig119.1626.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig119:19133..19513+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCAGCAGCCCGGTGTGGCTCCCCAAACTCTCGTGCCCAATCAGCA
GCAACATCAACCGCAGCAACCGTTCCACGGGCAGTTGGTGGGGCCGACGC
AAGGCCCGTACTTGGCGCAGCTGCCAGGCCCGCCGATGCCAGCGCACCAG
CAGCAGATGGCGGGCCCGCCCCAATGGCGCCCGCCGCAAGCTCCCCCGGT
AGGCGTGGGCGGACTCCCCGTGCCGCACCTGAAGCACGTGTGGAGCTCCT
TCTTGCCCGTTGCCTCGAGCGTCGCCGGAGGGGGCCCGAGAGAGACCTCT
AGCAAGCTGGACGAGTGGGCCGCGTCGCTGTCGGGAGCGATCGCCTCGGA
CGCACAGATGCCCCAGCAGCCCGGTGTGGCTCCCCAAACTCTCGTGCCCA
ATCAGCAGCAACATCAACCGCAGCAACCGTTCCACGGGCAGTTGGTGGGG
CCGACGCAAGGCCCGTACTTGGCGCAGCTGCCAGGCCCGCCGATGCCAGC
GCACCAGCAGCAGATGGCGGGCCCGCCCCAATGGCGCCCGCCGCAAGCTC
CCCCGGTAGGCGTGGGCGGACTCCCCGTGCCGCACCTGAAGCACGTGTGG
AGCTCCTTCTTGCCCGTTGCCTCGAGCGTCGCCGGAGGGGGCCCGAGAGA
GACCTCTAGCAAGCTGGACGAGTGGGCCGCGTCGCTGTCGGGAGCGATCG
CCTCGGACGCACAG
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