mRNA_L-elsbetiae_contig119.1625.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig119.1625.1
Unique NamemRNA_L-elsbetiae_contig119.1625.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig119.1625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig119contigL-elsbetiae_contig119:18372..19100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size729
Cds size729
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815389.5895765-CDS-L-elsbetiae_contig119:18371..191001622815389.5895765-CDS-L-elsbetiae_contig119:18371..19100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig119 18372..19100 +
1691682874.4737904-CDS-L-elsbetiae_contig119:18371..191001691682874.4737904-CDS-L-elsbetiae_contig119:18371..19100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig119 18372..19100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig119.1625.1prot_L-elsbetiae_contig119.1625.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig119 18372..19100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig119.1625.1

>prot_L-elsbetiae_contig119.1625.1 ID=prot_L-elsbetiae_contig119.1625.1|Name=mRNA_L-elsbetiae_contig119.1625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
SSSQCLSDSNQDRWRFRQTRWWFTRHRPLKEGLWGPLHHCRARRGLPCRP
RLQGLWLDQAVQCMERLVRLPARRQFKDVRASGSSNSSSRFISSRSARSL
EAHPSKCSNFRKHNNCRSSRSHSRGALHSRWGHFYNNRRRRRRSSSSNSR
CKCKCSLPCSTSFLEARPSRCSPFPKYNNHSSSRCTSFRGALHSRRRGSH
INRRRHNRCRCKCSLQCSTSFPEAHPSRCSQFRKRNNNNSSSS
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mRNA from alignment at L-elsbetiae_contig119:18372..19100+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig119.1625.1 ID=mRNA_L-elsbetiae_contig119.1625.1|Name=mRNA_L-elsbetiae_contig119.1625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=729bp|location=Sequence derived from alignment at L-elsbetiae_contig119:18372..19100+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCAGCCAATGCTTGTCCGACAGCAATCAGGACCGATGGCGGTTCAG
GCAAACCCGATGGTGGTTCACCCGCCACCGCCCCCTCAAGGAGGGGCTAT
GGGGACCCCTGCACCACTGTCGAGCGAGGCGTGGCCTTCCCTGCAGGCCG
CGGCTGCAGGGCTTGTGGCTGGACCAGGCGGTGCAATGCATGGAGCGGCT
CGTACGCTTGCCAGCCCGACGCCAATTCAAGGATGTCAGGGCGTCGGGCA
GCAGCAACAGCAGCAGCAGATTCATCAGCAGCAGATCAGCCAGGTCCCTG
GAAGCACACCCCAGCAAATGCAGCAATTTCCGCAAACACAACAACTGCCG
CAGCAGCAGATCCCATTCCCGGGGAGCCCTCCACAGCAGATGGGGCCATT
TCTACAACAACCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAACAGCAGG
TGCAAATGCAAGTGCAGCCTACCATGTTCAACCAGTTTCCTGGAAGCACG
CCCCAGCAGATGCAGCCCTTTCCCCAAATACAACAACCACAGCAGCAGCA
GATGCACCAGTTTCCGGGGAGCACTCCACAGCAGACGCAGGGGTTCCCAC
ATCAACCGCCGCCGCCACAACAGATGCAGATGCAAATGCAGCCTACAATG
TTCAACCAGTTTTCCGGAAGCACACCCCAGCAGATGCTCCCAATTCCGCA
AGCGCAACAACAACAACAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig119:18372..19100+

>mRNA_L-elsbetiae_contig119.1625.1 ID=mRNA_L-elsbetiae_contig119.1625.1|Name=mRNA_L-elsbetiae_contig119.1625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig119:18372..19100+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCAGCCAATGCTTGTCCGACAGCAATCAGGACCGATGGCGGTTCAG
GCAAACCCGATGGTGGTTCACCCGCCACCGCCCCCTCAAGGAGGGGCTAT
GGGGACCCCTGCACCACTGTCGAGCGAGGCGTGGCCTTCCCTGCAGGCCG
CGGCTGCAGGGCTTGTGGCTGGACCAGGCGGTGCAATGCATGGAGCGGCT
CGTACGCTTGCCAGCCCGACGCCAATTCAAGGATGTCAGGGCGTCGGGCA
GCAGCAACAGCAGCAGCAGATTCATCAGCAGCAGATCAGCCAGGTCCCTG
GAAGCACACCCCAGCAAATGCAGCAATTTCCGCAAACACAACAACTGCCG
CAGCAGCAGATCCCATTCCCGGGGAGCCCTCCACAGCAGATGGGGCCATT
TCTACAACAACCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAACAGCAGG
TGCAAATGCAAGTGCAGCCTACCATGTTCAACCAGTTTCCTGGAAGCACG
CCCCAGCAGATGCAGCCCTTTCCCCAAATACAACAACCACAGCAGCAGCA
GATGCACCAGTTTCCGGGGAGCACTCCACAGCAGACGCAGGGGTTCCCAC
ATCAACCGCCGCCGCCACAACAGATGCAGATGCAAATGCAGCCTACAATG
TTCAACCAGTTTTCCGGAAGCACACCCCAGCAGATGCTCCCAATTCCGCA
AGCGCAACAACAACAACAGCAGCAGCAGCAGCAGCAGCCAATGCTTGTCC
GACAGCAATCAGGACCGATGGCGGTTCAGGCAAACCCGATGGTGGTTCAC
CCGCCACCGCCCCCTCAAGGAGGGGCTATGGGGACCCCTGCACCACTGTC
GAGCGAGGCGTGGCCTTCCCTGCAGGCCGCGGCTGCAGGGCTTGTGGCTG
GACCAGGCGGTGCAATGCATGGAGCGGCTCGTACGCTTGCCAGCCCGACG
CCAATTCAAGGATGTCAGGGCGTCGGGCAGCAGCAACAGCAGCAGCAGAT
TCATCAGCAGCAGATCAGCCAGGTCCCTGGAAGCACACCCCAGCAAATGC
AGCAATTTCCGCAAACACAACAACTGCCGCAGCAGCAGATCCCATTCCCG
GGGAGCCCTCCACAGCAGATGGGGCCATTTCTACAACAACCGCCGCCGCC
GCCGCCGCAGCAGCAGCAGCAACAGCAGGTGCAAATGCAAGTGCAGCCTA
CCATGTTCAACCAGTTTCCTGGAAGCACGCCCCAGCAGATGCAGCCCTTT
CCCCAAATACAACAACCACAGCAGCAGCAGATGCACCAGTTTCCGGGGAG
CACTCCACAGCAGACGCAGGGGTTCCCACATCAACCGCCGCCGCCACAAC
AGATGCAGATGCAAATGCAGCCTACAATGTTCAACCAGTTTTCCGGAAGC
ACACCCCAGCAGATGCTCCCAATTCCGCAAGCGCAACAACAACAACAGCA
GCAGCAGC
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