mRNA_L-elsbetiae_contig11892.1619.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11892.1619.1
Unique NamemRNA_L-elsbetiae_contig11892.1619.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11892.1619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11892contigL-elsbetiae_contig11892:3456..5927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size279
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11892.1619.1prot_L-elsbetiae_contig11892.1619.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11892 3456..5927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815389.3719978-CDS-L-elsbetiae_contig11892:3455..35191622815389.3719978-CDS-L-elsbetiae_contig11892:3455..3519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11892 3456..3519 +
1691682874.3553302-CDS-L-elsbetiae_contig11892:3455..35191691682874.3553302-CDS-L-elsbetiae_contig11892:3455..3519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11892 3456..3519 +
1622815389.3820736-CDS-L-elsbetiae_contig11892:5391..54991622815389.3820736-CDS-L-elsbetiae_contig11892:5391..5499Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11892 5392..5499 +
1691682874.363581-CDS-L-elsbetiae_contig11892:5391..54991691682874.363581-CDS-L-elsbetiae_contig11892:5391..5499Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11892 5392..5499 +
1622815389.391527-CDS-L-elsbetiae_contig11892:5820..59271622815389.391527-CDS-L-elsbetiae_contig11892:5820..5927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11892 5821..5927 +
1691682874.3739042-CDS-L-elsbetiae_contig11892:5820..59271691682874.3739042-CDS-L-elsbetiae_contig11892:5820..5927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11892 5821..5927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11892.1619.1

>prot_L-elsbetiae_contig11892.1619.1 ID=prot_L-elsbetiae_contig11892.1619.1|Name=mRNA_L-elsbetiae_contig11892.1619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
PSPTPAPTPSPTPSPTEAPTPAPTRTPTPGPTPAPSPSPTPAPTPSPTPS
PTETPTPAPTRTPTPGPTPAPSPSPTPAPTPSPTPSPTETPTP
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mRNA from alignment at L-elsbetiae_contig11892:3456..5927+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11892.1619.1 ID=mRNA_L-elsbetiae_contig11892.1619.1|Name=mRNA_L-elsbetiae_contig11892.1619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2472bp|location=Sequence derived from alignment at L-elsbetiae_contig11892:3456..5927+ (Laminarionema elsbetiae ELsaHSoW15)
CCATCTCCAACACCGGCCCCAACGCCCTCGCCCACGCCCTCGCCCACTGA
GGCACCGACCCCAGGTGGGGCGAAAGTAGCGTGAGCATTTTACCGCCGCA
GCTGTCCACCTTTCTCGTAATAGACACTTGCAGGACAGATGTTGTCCTGA
TTCGCATGATACAAGGGGTCCTGCTGGTGCAGCATAGATAGAACCAATCA
ATTTGATACTTTGTATAGTCTAGTCCCTAAAAGCGATTGCACGTTGCTCA
CGAACTGACGAGGCATTGTCTGTAATGGGATATATATGTTGCCTCAAACG
CAAAGAAGGCGATCGACCGGGACACGAAAGGCTGACAAGCGCTATGATCT
CCTCGTCCCTAATGTACCGCCGCAACTGTCTTCTAACGCCCACAGCACCG
ACTACATCGCCCACGCCCTCGCCTACTGAGACACCGACCCCAGGTGAGGC
CAAAGTAGCGTGAGCATTCAACCGCAGCCGCCCACCTTTCTTTTCATGGA
TCCTTGCAGGACACATGTTGTCATGCTCCGCATGATCAAAGGGGCCCTGC
TGGTGCAGCATAGAACCAACCAAGTTGATGTAGTCCCTAAAAGCGATTGC
ACGTTGCTCAAGAACTGACCAGGTATTTTCTGAAATGGGGCTTGGTGCCT
CAAACGCAAACAAGGCGGTCGACCAGACAACGAAATGCTAAAAAGTGCGA
TGATCTCCTCGTCCCCAATGTACAGCCTGAACTGTCCTGTAACCCCCACA
GCACCGACTACATCGCCCACGCCCTCGCCTACTGATACACCGACCCCAGG
TGAGGCCAAAGTAGCTGAACATTTTACCGCAGCCGTCCACCTTTATTTGC
AGGACACATGCATGTTGTCATGCATGTTGTCATGCTTGGCCATGATCAAA
CGGGCCCCACTGGTGCAGCATAGATATAACCAATAATAAAGTTGATATTC
TAGTCCTAAACGCGACTACACGCTGCTCACGAACTGATATCGTGGGGTAT
TTTCTGAAATGGGATATCTTACCTCAAAAGCAAAGAAAGCGATCGACCGG
GAAACGAAAGGCTAACAAGCGCAACTATCTTCTCGTTCCCATTGTACCGC
CTCAACTGTCCTGTAATCCCCACAACACCGACTAGATCGCCCACGCCCTT
ACCCACGCCCTCGCCTACTGAGACACCGACACAAGGCCAGGCCAAAGTAG
CGTGAACATTTTACCGCAGCCGTCCACCTTTTAATGGATCCTTGTAGGAA
ACATGTTGTCATGCTTCGCATGACCAAAGGAGCCCTGCTGGAGTGCAGTA
TGTGTGTGTGTGTGTGTGTGTGTGTATCCTTCCCATTTATTTTGGCGACA
GTCCCCCCAAGTGGAGACGTGCACTACATCTTGTTGTGTACTTAGAGGTA
TGTACTACACTTTGCAGTGCATTTTTCTGTACAACTAGAACCAACCGGGG
TCACACAGGGGGAGGTGAACACTGGGGCTTTTTCTTCTTTTTTATTTTAT
TTTTTTGCCCCACTTTCCTCCTGCGGTTCATGCCTTGGGTTTTATCGCGA
GAAGGGTCAAGCTGTCCCTTTGCCTCGTCAATGTGATTACGTCGAAGTTT
GATACTCACGAGCTTTCGAGCTTTTATCGCTTTCACCCGCAAAGTCGCAA
AATAAACTCTTCTGTTTGGGAATGAACTCAAGACTTTGCTGCTAATGGGT
TCGAATTTAAACCACTAGACCACCGGGACGACCGGTGTCTATATGGAACC
AATCAAGTTGATATCTAGTCCCTAAGAGCGACTACACGTTGCTCACGAAC
TGACGAGGTATTATCTGGAATGGGATGTGTTGCCTCAAACGCAAAGAAGG
CGATCGAACAGGAAACGAAAGGCTAACAAGCGCGATGATCTCCTCGTCCC
GAATGTACCGCCTGAACTGTCGTGCAACTCCCGCAGCACCGACTAGAACG
CCTACACCGGGCCCAACACCAGCCCCGAGCCCGAGCCCAACACCGGCCCC
AACACCCTCACCCACGCCCTCGCCTACTGAGACACCGACCCCAGGTGAGG
CCAAAGTAGCGTCAACATTTTACCGCAGCCGTCTACCTTTCTATTAAAGG
ACCCTTGTAGGAAATATGTTGTCATGCTTCGCCTGATCAAAGGAACCCTG
CTGATGCTGAAGCTTTAGAATCAATCAAGCTGATATAGTCTACCAGTAGT
CCCTAAAAGCGACTACACGTTGCTCACGAACTGACGAGGTATTATCTGGA
ATGGGATCTGTTGCCTCAAACGCAAAGAAGGCGATCGAACAGGAAACGAA
AGGCTAACAAGCGCGATGATCTCCTCGTCACCTGTACCGCCTCAACTGTC
GTGCAACCCCCGCAGCACCGACTAGAACGCCTACACCGGGCCCAACACCA
GCCCCGAGCCCGAGCCCAACACCGGCCCCAACACCCTCACCCACGCCCTC
GCCTACTGAGACACCGACCCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11892:3456..5927+

>mRNA_L-elsbetiae_contig11892.1619.1 ID=mRNA_L-elsbetiae_contig11892.1619.1|Name=mRNA_L-elsbetiae_contig11892.1619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig11892:3456..5927+ (Laminarionema elsbetiae ELsaHSoW15)
CCATCTCCAACACCGGCCCCAACGCCCTCGCCCACGCCCTCGCCCACTGA
GGCACCGACCCCAGCCATCTCCAACACCGGCCCCAACGCCCTCGCCCACG
CCCTCGCCCACTGAGGCACCGACCCCAGCACCGACTAGAACGCCTACACC
GGGCCCAACACCAGCCCCGAGCCCGAGCCCAACACCGGCCCCAACACCCT
CACCCACGCCCTCGCCTACTGAGACACCGACCCCAGCACCGACTAGAACG
CCTACACCGGGCCCAACACCAGCCCCGAGCCCGAGCCCAACACCGGCCCC
AACACCCTCACCCACGCCCTCGCCTACTGAGACACCGACCCCAGCACCGA
CTAGAACGCCTACACCGGGCCCAACACCAGCCCCGAGCCCGAGCCCAACA
CCGGCCCCAACACCCTCACCCACGCCCTCGCCTACTGAGACACCGACCCC
ACACCGACTAGAACGCCTACACCGGGCCCAACACCAGCCCCGAGCCCGAG
CCCAACACCGGCCCCAACACCCTCACCCACGCCCTCGCCTACTGAGACAC
CGACCCCA
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