mRNA_L-elsbetiae_contig1189.1613.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1189.1613.1
Unique NamemRNA_L-elsbetiae_contig1189.1613.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1189.1613.1 vs. uniprot
Match: B5LWA7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA7_9PHYC)

HSP 1 Score: 213 bits (543), Expect = 1.370e-65
Identity = 103/230 (44.78%), Postives = 154/230 (66.96%), Query Frame = 1 
Query:   37 FEDVDLKLVKLGAPRANKNSAGFKSSQIQYRG-EKLCIQTPVMKLPWDVKPKQLDESSNVSAQLALSFSGIDPGDDECDLHKFMVFMKAFDARVKELVVAMDGSLGKNSEEKVLDAYFKESVKESVNGQYPPTIQPKIWLKCRDGSSSKCVEDHAMDIVVYNMNKEMVAADNLSKGGMAAVIVEASTAWCSSMGVGITWVARQVVVKPIPKETFAFSMGSAFDVLRPEPQ 723
            + D D+  +KL   + +K ++G K++ I   G   + IQTP+M LPWD+ PK+LD++SNV A+LALSF  I+  D + ++ KF  F+  FD ++K LV  M G LGKNSE+  LDA F+ S+K+S +G+YPPT Q KIWL  + G +  CV+D  MD++V++MN   ++   + KG  AA I+  S  WCS++G+GITWVA+QV ++P  + TF F++GS FD +R  P+
Sbjct:    5 YADFDISTLKLSQAKTSKANSGCKTAYISAIGCANIAIQTPLMTLPWDIVPKKLDDTSNVRAELALSFMNINEYDPDNEILKFRNFLTDFDIKIKTLVAEMKGVLGKNSEDARLDASFRSSIKDSTSGEYPPTFQSKIWLSLKQGGAPSCVDDFEMDVMVFDMNGAQLSPTEMRKGCPAAAIIVPSYVWCSALGLGITWVAKQVAIQPKGESTFGFTLGSEFDEVRKCPE 234
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BLAST of mRNA_L-elsbetiae_contig1189.1613.1 vs. uniprot
Match: Q6XM26_9PHYC (FirrV-1-B10 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM26_9PHYC)

HSP 1 Score: 212 bits (540), Expect = 5.670e-65
Identity = 103/224 (45.98%), Postives = 147/224 (65.62%), Query Frame = 1 
Query:   22 MTTVQFEDVDLKLVKLGAPRANKNSAGFKSSQIQYRGE-KLCIQTPVMKLPWDVKPKQLDESSNVSAQLALSFSGIDPGDDECDLHKFMVFMKAFDARVKELVVAMDGSLGKNSEEKVLDAYFKESVKESVNGQYPPTIQPKIWLKCRDGSSSKCVEDHAMDIVVYNMNKEMVAADNLSKGGMAAVIVEASTAWCSSMGVGITWVARQVVVKPIPKETFAFSMG 690
            M    F + D+  +KL  P+ +K + G K++ I   G  K+ IQTP+M LPWD+ PK+LD+ SNV A+L+LSF GI+  D E +L KF  F+  FD ++K L+    G++GKNSE+  L+A F++S+KES  G YPPTIQ KIWL  + G S   VED  MD++V+++    +  D + KG  AA I+E S  WCS++GVGITWVA+QV ++P    TF F++G
Sbjct:   13 MAATHFSEFDVSTLKLSPPKTSKANVGCKTAYITAVGSVKIAIQTPIMTLPWDIVPKKLDDVSNVRAELSLSFVGINEDDPENELKKFKDFLSTFDQKIKTLISETHGAMGKNSEDTRLEASFRDSIKESATGNYPPTIQSKIWLNLKQGGSPSIVEDFDMDVMVFDLEGCQIQTDQMQKGCPAAAILEPSYVWCSALGVGITWVAKQVALQPKSASTFGFNLG 236
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BLAST of mRNA_L-elsbetiae_contig1189.1613.1 vs. uniprot
Match: Q6XLU5_9PHYC (FirrV-1-I1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU5_9PHYC)

HSP 1 Score: 210 bits (535), Expect = 2.080e-64
Identity = 103/220 (46.82%), Postives = 147/220 (66.82%), Query Frame = 1 
Query:   37 FEDVDLKLVKLGAPRANKNSAGFKSSQIQYRGE-KLCIQTPVMKLPWDVKPKQLDESSNVSAQLALSFSGIDPGDDECDLHKFMVFMKAFDARVKELVVAMDGSLGKNSEEKVLDAYFKESVKESVNGQYPPTIQPKIWLKCRDGSSSKCVEDHAMDIVVYNMNKEMVAADNLSKGGMAAVIVEASTAWCSSMGVGITWVARQVVVKPIPKETFAFSMGS 693
            F D D+  VKL  P+ +K ++G K++ +   G  K+ IQTPVM LPWD+ PK++D+ SNV  +L+LSF G+D  D + +L +F  F++ FD RVK L+   +G++GKNSEE  L   F+ ++KES  G YPPTIQ KIWL  + G S   VED  MD++V++M+   +  D + KG  AA I+E S  WCS++GVGITWVA+QV V+P    TF F++G+
Sbjct:    7 FYDFDISTVKLSPPKTSKANSGCKTAYLTTTGSMKIAIQTPVMTLPWDIVPKKMDDVSNVRGELSLSFVGMDERDADNELCQFKTFVEHFDERVKALISETNGAMGKNSEETRLGTNFRPTIKESATGNYPPTIQSKIWLNLKQGGSPSSVEDFDMDVMVFDMDGSRINTDQMQKGCPAAAILEPSYVWCSALGVGITWVAKQVAVQPQSVSTFGFNLGN 226
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BLAST of mRNA_L-elsbetiae_contig1189.1613.1 vs. uniprot
Match: A0A2P6MVC7_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MVC7_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 4.500e-6
Identity = 59/221 (26.70%), Postives = 106/221 (47.96%), Query Frame = 1 
Query:   40 EDVDLKLVKLGAPRANKNSAGFKSSQIQYRGEKLCIQTPVMKLPWDVKPKQLDESSNVSAQLALSFSGIDPGDDECDLHKFMVFMKAFDARVKELVVAMDGSL-----GKNSEEKVLDAYFKESVKESVNGQYPPTIQPKIWLKCRDGSSSKCVEDHAMDIVVYNMNKEMVAADNLSKGGMAAVIVEASTAWCSSMGVGITWVARQ--VVVKPIPKETFAF 681
            E+V++  ++ G     KN+ G +   + Y   +L IQTP++++P+D+      E   ++  LAL     D G +E ++ KF+  ++  D +VK+ +V    SL      K +++K L  YF   +KES   +Y P  +  I +   DG  +  V         Y  ++   + +N++KG     IVE  + +     VG++W   Q  VV K   ++ +AF
Sbjct:   93 ENVEVDKIQFG--EVEKNAKGGRFISLFYNRTRLRIQTPILRVPFDIGTNPESEGRKMNLALALD----DIGSNE-EVAKFLNVVQQIDQKVKDHLVNNSQSLLMTPDPKKAQDK-LSKYFS-CIKESQ--EYSPLFKAAIPIY--DGEPATRV---------YLDSEVQGSVENVTKGSRVVAIVEPKSIYMIGPNVGLSWRVSQIRVVEKARSRDEYAF 291
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1189.1613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
B5LWA7_9PHYC1.370e-6544.78Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM26_9PHYC5.670e-6545.98FirrV-1-B10 n=1 Tax=Feldmannia irregularis virus a... [more]
Q6XLU5_9PHYC2.080e-6446.82FirrV-1-I1 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A2P6MVC7_9EUKA4.500e-626.70Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1189contigL-elsbetiae_contig1189:10547..11362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size816
Cds size795
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815389.1116846-UTR-L-elsbetiae_contig1189:10546..105671622815389.1116846-UTR-L-elsbetiae_contig1189:10546..10567Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1189 10547..10567 +
1691682874.2763276-UTR-L-elsbetiae_contig1189:10546..105671691682874.2763276-UTR-L-elsbetiae_contig1189:10546..10567Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1189 10547..10567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815389.1263463-CDS-L-elsbetiae_contig1189:10567..113621622815389.1263463-CDS-L-elsbetiae_contig1189:10567..11362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1189 10568..11362 +
1691682874.2855284-CDS-L-elsbetiae_contig1189:10567..113621691682874.2855284-CDS-L-elsbetiae_contig1189:10567..11362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1189 10568..11362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1189.1613.1prot_L-elsbetiae_contig1189.1613.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1189 10568..11362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1189.1613.1

>prot_L-elsbetiae_contig1189.1613.1 ID=prot_L-elsbetiae_contig1189.1613.1|Name=mRNA_L-elsbetiae_contig1189.1613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=265bp
MTTVQFEDVDLKLVKLGAPRANKNSAGFKSSQIQYRGEKLCIQTPVMKLP
WDVKPKQLDESSNVSAQLALSFSGIDPGDDECDLHKFMVFMKAFDARVKE
LVVAMDGSLGKNSEEKVLDAYFKESVKESVNGQYPPTIQPKIWLKCRDGS
SSKCVEDHAMDIVVYNMNKEMVAADNLSKGGMAAVIVEASTAWCSSMGVG
ITWVARQVVVKPIPKETFAFSMGSAFDVLRPEPQTKKRARPEEEAHEEGS
HSFSREDSSVDEEF*
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mRNA from alignment at L-elsbetiae_contig1189:10547..11362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1189.1613.1 ID=mRNA_L-elsbetiae_contig1189.1613.1|Name=mRNA_L-elsbetiae_contig1189.1613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig1189:10547..11362+ (Laminarionema elsbetiae ELsaHSoW15)
GCGACAAGTACACAAGCCAAGATGACTACAGTTCAGTTCGAAGACGTCGA
CCTAAAGCTGGTCAAGCTTGGGGCGCCTCGCGCCAACAAGAACTCGGCTG
GGTTCAAGAGCAGTCAGATCCAGTACAGGGGCGAGAAGCTGTGCATCCAA
ACGCCTGTCATGAAGCTGCCGTGGGACGTCAAGCCGAAGCAGCTGGACGA
GTCATCTAACGTTTCTGCGCAGCTGGCGCTGTCTTTTTCTGGGATCGACC
CTGGAGACGACGAGTGTGACTTGCACAAGTTTATGGTGTTTATGAAGGCA
TTTGATGCCAGGGTTAAGGAGTTGGTTGTCGCGATGGACGGTAGTCTGGG
TAAGAATTCGGAGGAAAAGGTGTTGGACGCCTACTTTAAGGAATCGGTGA
AGGAGTCCGTGAACGGGCAGTACCCTCCTACCATCCAGCCCAAGATCTGG
CTGAAGTGCAGGGACGGGAGTTCTAGCAAGTGCGTCGAGGATCACGCGAT
GGACATTGTGGTGTACAACATGAACAAGGAGATGGTTGCGGCTGACAATC
TATCCAAGGGTGGCATGGCCGCCGTTATTGTCGAGGCAAGCACTGCGTGG
TGCTCGTCCATGGGGGTCGGCATAACGTGGGTAGCGAGGCAGGTTGTCGT
AAAACCCATCCCCAAGGAAACTTTCGCGTTTTCCATGGGGAGTGCGTTCG
ATGTCCTCCGCCCCGAACCGCAGACCAAAAAAAGGGCGCGCCCCGAGGAA
GAGGCCCATGAAGAAGGGAGCCACTCGTTCAGCCGCGAGGACTCGTCAGT
AGACGAAGAGTTTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1189:10547..11362+

>mRNA_L-elsbetiae_contig1189.1613.1 ID=mRNA_L-elsbetiae_contig1189.1613.1|Name=mRNA_L-elsbetiae_contig1189.1613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1590bp|location=Sequence derived from alignment at L-elsbetiae_contig1189:10547..11362+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTACAGTTCAGTTCGAAGACGTCGACCTAAAGCTGGTCAAGCTTGG
GGCGCCTCGCGCCAACAAGAACTCGGCTGGGTTCAAGAGCAGTCAGATCC
AGTACAGGGGCGAGAAGCTGTGCATCCAAACGCCTGTCATGAAGCTGCCG
TGGGACGTCAAGCCGAAGCAGCTGGACGAGTCATCTAACGTTTCTGCGCA
GCTGGCGCTGTCTTTTTCTGGGATCGACCCTGGAGACGACGAGTGTGACT
TGCACAAGTTTATGGTGTTTATGAAGGCATTTGATGCCAGGGTTAAGGAG
TTGGTTGTCGCGATGGACGGTAGTCTGGGTAAGAATTCGGAGGAAAAGGT
GTTGGACGCCTACTTTAAGGAATCGGTGAAGGAGTCCGTGAACGGGCAGT
ACCCTCCTACCATCCAGCCCAAGATCTGGCTGAAGTGCAGGGACGGGAGT
TCTAGCAAGTGCGTCGAGGATCACGCGATGGACATTGTGGTGTACAACAT
GAACAAGGAGATGGTTGCGGCTGACAATCTATCCAAGGGTGGCATGGCCG
CCGTTATTGTCGAGGCAAGCACTGCGTGGTGCTCGTCCATGGGGGTCGGC
ATAACGTGGGTAGCGAGGCAGGTTGTCGTAAAACCCATCCCCAAGGAAAC
TTTCGCGTTTTCCATGGGGAGTGCGTTCGATGTCCTCCGCCCCGAACCGC
AGACCAAAAAAAGGGCGCGCCCCGAGGAAGAGGCCCATGAAGAAGGGAGC
CACTCGTTCAGCCGCGAGGACTCGTCAGTAGACGAAGAGTTTTAAATGAC
TACAGTTCAGTTCGAAGACGTCGACCTAAAGCTGGTCAAGCTTGGGGCGC
CTCGCGCCAACAAGAACTCGGCTGGGTTCAAGAGCAGTCAGATCCAGTAC
AGGGGCGAGAAGCTGTGCATCCAAACGCCTGTCATGAAGCTGCCGTGGGA
CGTCAAGCCGAAGCAGCTGGACGAGTCATCTAACGTTTCTGCGCAGCTGG
CGCTGTCTTTTTCTGGGATCGACCCTGGAGACGACGAGTGTGACTTGCAC
AAGTTTATGGTGTTTATGAAGGCATTTGATGCCAGGGTTAAGGAGTTGGT
TGTCGCGATGGACGGTAGTCTGGGTAAGAATTCGGAGGAAAAGGTGTTGG
ACGCCTACTTTAAGGAATCGGTGAAGGAGTCCGTGAACGGGCAGTACCCT
CCTACCATCCAGCCCAAGATCTGGCTGAAGTGCAGGGACGGGAGTTCTAG
CAAGTGCGTCGAGGATCACGCGATGGACATTGTGGTGTACAACATGAACA
AGGAGATGGTTGCGGCTGACAATCTATCCAAGGGTGGCATGGCCGCCGTT
ATTGTCGAGGCAAGCACTGCGTGGTGCTCGTCCATGGGGGTCGGCATAAC
GTGGGTAGCGAGGCAGGTTGTCGTAAAACCCATCCCCAAGGAAACTTTCG
CGTTTTCCATGGGGAGTGCGTTCGATGTCCTCCGCCCCGAACCGCAGACC
AAAAAAAGGGCGCGCCCCGAGGAAGAGGCCCATGAAGAAGGGAGCCACTC
GTTCAGCCGCGAGGACTCGTCAGTAGACGAAGAGTTTTAA
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