mRNA_L-elsbetiae_contig1189.1609.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
|
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1189.1609.1 vs. uniprot
Match: Q8QNC2_ESV1K (EsV-1-160 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC2_ESV1K) HSP 1 Score: 254 bits (649), Expect = 2.380e-68 Identity = 234/749 (31.24%), Postives = 354/749 (47.26%), Query Frame = 1
Query: 4 SVTWIQDGNGNYEVSSREHLKQLMNNGSLYTDAGSSPSSYWAAGTNYIQTADINLLSNSTDIKPIGGTSG--FYGDYDGGGFSISNWSYLDSNYTSTTNCQHYVGLFGYPRENVLKNIRLTGVFSLLGFHSYCGFLVGYSVETNVYNIVCDFDSGTNMTRGDASTNAASLRVGCVAGYARAVSSVSAFYTGIEVKGDIDLV--LNGSISFSCIGGICGFTDNTEISLVSISATIS-GLSGYCCGGIVGHIYRDA-RLSKSVNNMTGDITAIKYAXXXXXXXXXXXXXXXXXXXXXXXIINVATNSTSGAGGITGEAGAEG---TYGTLFNYMKGNITG-------FNSAGMFARVLTSTSVTNSINAMDGNADNSVLSTTG-SPGTLTEDVVVITNYGLNYNTNDN--GTSTPLTGFSTLSAYPDLPYFTLGGSDTIGTSYSYDFVFANVGRNFATPRATNIPVSFDAVTGAIGYNVTIEASNTIAY-------ESGTYTTGDTFILDGNKMEVFDYYGLTVVSVNIAPLIVEPSVITIPITITEVP--GAIGYRVSYTGPDGNEITALSDVTTLEHSLTGIVPETEYTIKLYADTGNG--YQLTEEIATTTLANVAANYDVNIFVE-DGVINLSSLPDATISNIAEVMNELFTTGDLVSVSIQ-GKPELNTYFINLGDELSIDAIDGVLLPFVEASTPGQDVSVVLSDGSTIVGINFDEAVNTITVNNVVYSPGDSFVLDGKKVTVVE 2154
++TW++ G YEVS++EHL QLM+ G LY + P+ YW+A Y+QTADI+L+ + I PIG ++ F GDYDGG + ISNW +T GLFG LK++RL GV++ G SY GF+ G V ++ DF GT +T T G + GY + S Y G V+G +++ NG GG+ G T++++ AT + G++G GG++G + DA LS +N M G+I XXXXX TS AGGI G + L N+ F F+ + S +NSI AM+G + +V T +P + D VV T +G+ + D+ ++T L G++T ++ +L YF L G+D GT+YS+DFVFAN+G N + T++ + V+ + + + +NT Y + +T + D + VFDY TV+ LI +P + I + ++ + GA+ NE+ A + T ++G+ ET YTI+LY G G Y L + TT AN+A NYDV FV G ++S L D+ ++ MN+LF+TG V V+I K T F+ G +S+ + +LLPF +S Q ++ LSD + V ++ G S +LDGKKVTVV+
Sbjct: 501 TLTWVKSG-AQYEVSTKEHLLQLMHQGLLYVNGNDPPTDYWSAS--YLQTADIDLIDDHEHITPIGVSTENPFSGDYDGGSYKISNWC--------STEASDRTGLFGEVVGGSLKHLRLGGVWTSSGASSYRGFVCGKLDSAVVRDVEGDFAEGTAITNSATHT-------GTLFGYV----NDSEVY-GATVRGSVEIEESTNGRT-----GGVVGHAVGTDVTMCRNVATFTKGITGDSAGGVIG--FNDACNLSCLINAMQGNIVG------SFAGGVCGQIFSGTNAXXXXXXXXXXXXXTSTAGGIVGRVFTRDDNLVFTKLANHXXXXXXXXXXXXXXFGQLSRFSGLTGDISASNSIVAMNGAVEQAVRGTEDFTPSAI--DAVVDTGFGMTHAGGDDYASSNTALEGYTTDPSFTELSYFPLVGTDPDGTTYSWDFVFANIGGNASYSDYTHLSLHTGQVSAPLFADFGLSETNTQVYATYAHLGDKALFTDESFTVHDSSADVVFDYSKSTVLFGTAPALICDPRALNIKVLLSSLVDVGAVNKLTYQESGTLNEVVAHENFTDTSKIVSGLKAETTYTIRLYTAAGLGLEYTLLGQDDCTTYANLAKNYDVADFVSASGAYDISDLDDS----VSSAMNDLFSTGASVEVAINDSKKSRKTTFVKRGGVISVANEEALLLPFDSSSGATQSATITLSDXXXX-XXXXXXXXXXXEIGGVSFTHGQSLILDGKKVTVVD 1206
BLAST of mRNA_L-elsbetiae_contig1189.1609.1 vs. uniprot
Match: Q6XM36_9PHYC (FirrV-1-A51 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM36_9PHYC) HSP 1 Score: 225 bits (574), Expect = 8.960e-61 Identity = 164/467 (35.12%), Postives = 245/467 (52.46%), Query Frame = 1
Query: 4 SVTWIQDGNGNYEVSSREHLKQLMNNGSLYTDAGSSPSSYWAAGTNYIQTADINLLSNSTDIKPIGGTSGFYGDYDGGGFSISNWSYLDSNYTSTTNCQHYVGLFGYPRENV--LKNIRLTGVFSLLGFHSYCGFLVGYSVETNVYNIVCDFDSGTNMTRGDASTNAASLRVGCVAGYARAVSSVSAFYTGIEVKGDIDLVLNGSISFSCIGGICGFTD-NTEISLVSISATI-SGLSGYCCGGIVGHIYRDARLSKSVNNMTGDITAIKYAXXXXXXXXXXXXXXXXXXXXXXXIINVATNSTSGAGGITGEAGAEG--TYGTLFNYMKGNITGFNSAGMFARVLTST-SVTNSINAMDGNADNSVLSTTGSPGTLTEDVVVITNYGLNYNTNDNGTSTPLTGFSTLSAYPDLPYFTLGGSDTIGTSYSYDFVFANVGRNFA-TPRATNIPVSFDAVTGAIGYNVT 1380
++TW++D N YEVSS+EHL Q+MNNG+LYT+AG+SP +W +YIQT DI+ SNST++ PI F G YDG + I N+SY D + + NC ++ GLFGY +KN++LTG +++ G HS G L GY + V NI C D+G+++ + D+ T+ +VG V G + +A GI ++G++ ++ + S + + +GGI G + N+ ++L+ AT S L G GG++G +SK +N MTGDI A N+ + AGG+ G E TY TL NYM G+I +T SV S+ AM+G + + PG + V ++GL Y T D+G +T + + LPYF L G+D GTSY+++FVF N+ P+ I V+F AV+GAI Y +T
Sbjct: 5 TITWVRDSNSKYEVSSKEHLLQIMNNGTLYTNAGTSPGDFWRV--DYIQTTDIDFASNSTNVVPI---EKFKGTYDGDNYEIRNYSYEDPEFNTANNCINFAGLFGYVLGAAAEVKNLKLTGRWNVKGVHSSGGLLAGYCYISKVANITCSLDAGSSIEQ-DSITSDTYPKVGGVIG-----QTDTATVQGITLEGEVSVICSPSATRAYVGGIIGSANSNSVVTLLRNLATFPSTLKGGEVGGVIGRCQFATSISKCLNAMTGDIEGDTLAGGVIGMGQTGNNSQVLDYLVCSMRGNITPVGNARAGGVFGGIQYENDHTYTTLLNYMTGDIXXXXXXXXXXXXTGTTYSVNTSMVAMNGYVKFAAVFE--DPGIVIAHVDP--SFGLTY-TIDHGITTDALSGLPIDSESILPYFDLTGTDNYGTSYAWEFVFGNLPEGMTLVPKPLFIDVTFAAVSGAIAYKLT 455
BLAST of mRNA_L-elsbetiae_contig1189.1609.1 vs. uniprot
Match: B5LWE4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE4_9PHYC) HSP 1 Score: 208 bits (529), Expect = 1.840e-54 Identity = 171/503 (34.00%), Postives = 256/503 (50.89%), Query Frame = 1
Query: 1 MSVTWIQDGNGNYEVSSREHLKQLMNNGSLYTDAGSSPSSYWAAGTNYIQTADINLLSNSTDIKPIG-GTSGFYGDYDGGGFSISNWSYLDSNYT--STTNCQHYVGLFGYP-RENVLKNIRLTGVFSLLGFHSYCGFLVGYSVETNVYNIVCDFDSGTNMTRGDASTNAASLR--VGCVAGYARAVSSVSAFYTGIEVKGDIDLVLNGSISFSCIGGICGFTDNTEISLV-SISATISGLSGYCCGGIVGHIYRDARLSKSVNNMTGDITAIKYAXXXXXXXXXXXXXXXXXXXXXXXIINVATNSTSGAGGITGEAGAEGTYGTLF---------NYMKGNITGF---NSAGMFA-RVLTSTSVTNSINAMDGNADNSVLSTTGSPGTLTEDVVVI-TNYGLNYNTNDNGT---STPLTGFSTLSAYPDLPYFTLGGSDTIGTSYSYDFVFANVGRNFATPRATNIPVSFDAVTGAIGYNVTIEASNTIAYESGTYTTGDT 1437
MSVTW+ +G+ YEVSS+EHL QLM+NGSLYT+ GS PS++ +A +++QT +I+L ++ T+I+PIG F G YDG SI NWSY + + ST + YVGLFGY VLKNIR+TGV +L GF ++ G L+GYS + NI + D G+ + +GD +++ VG +AG + Y G+ + G++D+V +++ +G + G+ NT ++LV +++ S ++GY GG+ G ++K +N M G + A +A ++ NS +G +TG G G L+ NYM G+I SAG+ RV + TN++NAM G+ ++ G P E +V I T +GL Y T+ T ST T TL LP L G+D+ +Y ++FVF N R ++ V F V GA Y +T + S G TT DT
Sbjct: 1 MSVTWVLNGDSKYEVSSKEHLHQLMHNGSLYTNEGSVPSNFMSA--DFVQTVEIDLENDDTNIQPIGLSDDSFKGSYDGANLSIKNWSYTATGFDTGSTDDFLAYVGLFGYVFHPCVLKNIRMTGVCTLRGFTTFGGILLGYSNSATISNIDLELDEGSLIEQGDVPNGYSNMGGVVGQLAG--------GSMY-GVTLSGELDVVPGPNMATQAVGCVIGYAGNTIVTLVRNLAKFTSTVTGYNVGGVFGDSSA-VTITKVLNAMEGSLLAAMFAGGIFGKLRTTGSSQ---------VVGELVNSMNGDIEVTGAGFCAGIVGYLYSSLNHDKWLNYMSGDIVSAVASRSAGIIGQRVAADYTFTNTLNAMKGSTYHA-----GLPYDHGETMVYIDTEFGLTY-TDSLSTALFSTMDTSAFTLDPETSLPVIALTGTDSESVAYDWEFVFGNNTTIEFVARPLHVDVKFGEVPGATQYRLTKQLS-----PDGVETTVDT 471
BLAST of mRNA_L-elsbetiae_contig1189.1609.1 vs. uniprot
Match: Q8QNC3_ESV1K (EsV-1-159 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC3_ESV1K) HSP 1 Score: 142 bits (358), Expect = 2.620e-32 Identity = 90/234 (38.46%), Postives = 134/234 (57.26%), Query Frame = 1
Query: 1489 VVSVNIAPLIVEPSVITIPITITEVPGAIGYRVSYTGPDGNEITALSDVTTLEHS-LTGIVP-----------ETEYTIKLYADTGNGYQLTEEIATTTLANVAANYDVNIFVEDGVINLSSLPDATISNIAEVMNELFTTGDLVSVSIQGKPELNTYFINLGDELSIDAIDGVLLPFVEASTPGQDVSVVLSDGSTIVGINFDEAVNTITVNNVVYSPGDSFVLDGKKVTVVE 2154
V++ L++ P V I TI E+ GA+ YRV G +G SD TT+ H +TGIV ET Y + LYA G GY++ + ++ TLANVA+NY V+ + G +LS+L A + ++ +VMN+LF TG+ + VS+ GK + F+ G+ + D D VL PF +S GQ ++ LSD ST +++DE ++IT+ + Y GD FVLDGKK T++E
Sbjct: 297 VITAKQVSLVLSPRVTRIRATIAEIDGALSYRV-VVGEEG------SDSTTVTHDDITGIVTDRMVEIKNLQAETTYAVTLYASYGGGYEVVQTSSSQTLANVASNYSVSDYGAAGAYDLSTLDQAELDSVNQVMNDLFATGEKIGVSVSGKKKATLSFVKRGEVTTTD--DSVLAPFSSSSGSGQMFTLQLSDASTKT-VSYDETTDSITIGDHEYMSGDRFVLDGKKCTILE 520
BLAST of mRNA_L-elsbetiae_contig1189.1609.1 vs. uniprot
Match: Q8QNM5_ESV1K (EsV-1-39 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNM5_ESV1K) HSP 1 Score: 116 bits (291), Expect = 1.760e-23 Identity = 70/217 (32.26%), Postives = 125/217 (57.60%), Query Frame = 1
Query: 1519 VEPSVITIPITITEVPGAIGYRVSYTGPDGN---EITALSDVTTLEHSLTGIVPETEYTIKLYA---DTGNGYQLTEEIATTTLANVAANYDVNIFVED-GVINLSSLPDATISNIAEVMNELFTTGDLVSVSIQGKPELNTYFINLGDELSIDAIDGVLLPFVEASTPGQDVSVVLSDGSTIVGINFDEAVNTITVNNVVYSPGDSFVLDGKKVTV 2148
V P ++I +T V GA Y V Y+ + + + T+ + T L HS+ ++ +T Y++ Y DT ++ TL NVA+N+DV+ + ++ G +L L ++S + +V+N++F+TGD V++S++GK E T F+ GD +ID + +PF ++ PGQ V++ L+D +T+ + +D+ + + Y+ GDS VLDG+KVT+
Sbjct: 396 VVPRPMSIDLTWPAVSGATAYGVKYSVGEMDAEAKTTSAASTTALRHSVRNLLSQTLYSVYTYYSMDDTDPSVPMSSG-QYLTLPNVASNHDVSSYADERGGFDLRGLSTESLSALDDVLNDIFSTGDSVTLSLRGKGETKTKFVKRGDTAAIDDGVSIAMPFSASAGPGQSVTLALTDATTV-AVAYDDTTEAVLIGGTTYAAGDSLVLDGQKVTI 610
BLAST of mRNA_L-elsbetiae_contig1189.1609.1 vs. uniprot
Match: B5LWG3_9PHYC (Putative LamG-like jellyroll protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG3_9PHYC) HSP 1 Score: 92.8 bits (229), Expect = 2.590e-16 Identity = 57/191 (29.84%), Postives = 98/191 (51.31%), Query Frame = 1
Query: 1579 YRVSYTGPDGNEITALSDVTTLEHSLTGIVPETEYTIKLYADTGN-GYQLTEEIATTTLANVAANYDVNIFVEDGVINLSSLPDATISNIAEVMNELFTTGDLVSVSIQGKPELNTYFINLGDELSIDAIDGVLLPFVEASTPGQDVSVVLSDGSTIVGINFDEAVNTITVNNVVYSPGDSFVLDGKKVTV 2148
YR++ G EIT++ T+ + + P T YT +LY T + Y L TTL + AN +++IF+ +GV N S L + T + ++E+ TGD + + + + G I +LL F + Q ++ LSD + ++ I +D++VN+I V+ + G++F+LDGKKV+V
Sbjct: 228 YRITQEVASGGEITSVDATTSTTSIVYNLTPSTTYTFRLYRSTDDVNYTLDRSEDVTTLDDTPANSNMSIFLTNGVYNFSQLEETTQEILKNHIDEILVTGDSIIIDNDEFDNQAFFAVARGTTSEIPDSKPILLLFNPSKGSSQSATLELSDATNVI-ITYDDSVNSIVVDGITRFVGETFILDGKKVSV 417
BLAST of mRNA_L-elsbetiae_contig1189.1609.1 vs. uniprot
Match: B5LWA1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA1_9PHYC) HSP 1 Score: 71.2 bits (173), Expect = 2.580e-9 Identity = 80/310 (25.81%), Postives = 133/310 (42.90%), Query Frame = 1
Query: 1300 RNFATPRATNIPVSF----DAVTGAI--GYNVTIEASNTIAYESGTYTTGDTF---ILDGNKMEVFDYYGLTVVSVNIAPL-------IVEPSVITIP----ITITEVPGAIGYRVSYTGPDGNEITALSDVTTLEHSLTGIVPETEYTIKLYAD-------TGNGYQLTEEIATTTLANVAANYDVNIFVEDGVINLSSLPDATISNIAEVMNELFTTGDLVSVSIQGKP-ELNTYFINLGDELSIDAID---GVLLPFVEASTPGQDVSVVLSDGSTIVGINFDEAVNTITVNNVVYSPGDSFVLDGK 2136
R F T A N SF D VT G ++ + + T+ E+G G T+ I KM F Y + + S +++ + +++ + + +P ++ +V G Y V Y G + A V + ++ + + Y K YA G L + + + +N D+ +F D V + L D ++ EV+ V + + K LN F+ G+ S+ + +L PF+ +PGQ +S+ LSD ST + FDE T+TV+ V YS GD FVLD +
Sbjct: 124 RFFETSLAPNTWYSFVMTYDGVTSKTYWGGDLVLTQTVTLNTEAGFVNLGQTYSNGIDFAGKMVDFRIYDVDMSSEDVSSVFADGPSPLLDVAAVMLPYVAQLSWRDVAGVSAYDVMYEENGGESVVAAESVDSTSLAVYDLKEGSTYNFKFYAGGVLVGSVDGQTTPLLDSDNLKDMLTLVSN-DLTVFNTDTVSEMQRLMDLSLETNEEVV---------VRFTFKNKTLPLNARFVRDGETFSMSTLGVEGSILTPFIPDGSPGQSLSLELSDLSTTT-LTFDEINGTVTVDGVTYSTGDKFVLDDR 422 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1189.1609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1189.1609.1 >prot_L-elsbetiae_contig1189.1609.1 ID=prot_L-elsbetiae_contig1189.1609.1|Name=mRNA_L-elsbetiae_contig1189.1609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=720bp MSVTWIQDGNGNYEVSSREHLKQLMNNGSLYTDAGSSPSSYWAAGTNYIQback to top mRNA from alignment at L-elsbetiae_contig1189:341..2968+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1189.1609.1 ID=mRNA_L-elsbetiae_contig1189.1609.1|Name=mRNA_L-elsbetiae_contig1189.1609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2628bp|location=Sequence derived from alignment at L-elsbetiae_contig1189:341..2968+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1189:341..2968+ >mRNA_L-elsbetiae_contig1189.1609.1 ID=mRNA_L-elsbetiae_contig1189.1609.1|Name=mRNA_L-elsbetiae_contig1189.1609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4320bp|location=Sequence derived from alignment at L-elsbetiae_contig1189:341..2968+ (Laminarionema elsbetiae ELsaHSoW15)back to top |