mRNA_L-elsbetiae_contig11884.1608.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig11884.1608.1 vs. uniprot
Match: D8LGU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU8_ECTSI) HSP 1 Score: 480 bits (1236), Expect = 6.020e-141 Identity = 387/594 (65.15%), Postives = 411/594 (69.19%), Query Frame = 1 Query: 1561 RQHRPSGQELRQLTVGTEVEERRTLAALRDLEACLEESKVAAAETA----VEAETAAEAAGVAATLVEKAGGDEAPKTAGAVASREQQEEDKEEAPRWNKKKGRGCGDSSTAAVXXXXXXAAGVLPAQLVVALGLDPGAG----GSSGDVEANPGE---------ANGCSP-HVDLVRQARASVEFRVARRRYRDELEHAAVLAFSGGSGLEEAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAVKAENI---EALGVSSRSTAVAAAXXXAVTAAKGPSGVRTRAANGAPVSHLFRARVDAAPGAVPKSSRDKEIARPLMVRAIRRRRLALRRRWEELGDRYAGLHNAWQGDMVRWEQKMEREEAKEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLRSERRGGRRLSDVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDGLPARCRGLAPSIACPAGCNCPAAAEAERKRSNLWTDVEKCIFLDKFLHHPKNFSRIASFLPKKSPEDVVQFYYDSKTSIDYKALLKEAVNRNK 3279 RQ PS +ELR+LT GTEVEERRTLAALRDLEACLEE ++AAA A EAE A A +A+ + +G P T +ASR D G + T AV XXXX LPA+L ALGL G G G D A G NG SP HVDLVRQARASVEFRVARRRY+ ELE+AA XXXXXXXXXXXXXXXXXXX + + E G S S A AA+ A KGPSG+RTR GAPVSHLFRARVDAAPG VPKS RD IAR + R LRRRWE+LGD+YAGLHNAW DM+RWE+KME XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +SLRSERRGGRRLSDVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDGLPARCRGL ACPAGCNCPAA EAERK SNLWTDVEKCIFLDKFLHHPKNF RIASFLP+KSPEDVVQFYYDSKTSIDYK LLKEAVNRNK Sbjct: 1386 RQCHPSRKELRRLTSGTEVEERRTLAALRDLEACLEEGRIAAATAASTPVAEAEKAPVVADASASQAKSSGEANNPGTEKTIASRSSANND---------------GGTLTPAVAAXXXXXXAALPAELATALGLAEGDGKRSEGGGSDQPAVAGGDRVGVDHEGRNGFSPPHVDLVRQARASVEFRVARRRYKGELENAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSEHGGPDESSAKGLPGPSQSPPGVVTTERAGASPGSKAAAAS----APARKGPSGLRTRVPTGAPVSHLFRARVDAAPGGVPKSGRDVAIARVM-------RENQLRRRWEKLGDQYAGLHNAWHVDMLRWEEKMEE---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGASLRSERRGGRRLSDVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDGLPARCRGLPADAACPAGCNCPAAVEAERKLSNLWTDVEKCIFLDKFLHHPKNFMRIASFLPRKSPEDVVQFYYDSKTSIDYKTLLKEAVNRNK 1944
BLAST of mRNA_L-elsbetiae_contig11884.1608.1 vs. uniprot
Match: A0A6H5K1H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H2_9PHAE) HSP 1 Score: 457 bits (1177), Expect = 5.470e-133 Identity = 384/671 (57.23%), Postives = 409/671 (60.95%), Query Frame = 1 Query: 1561 RQHRPSGQELRQLTVGTEVEERRTLAALRDLEACLEESKVAAAETAVEAETAAEAAGVAATLVEKAGGDEAPKTAGAVASREQQEEDKEEAPRWNKKKGRGCGDSSTAAVXXXXXXAAGVLPAQLVVALGLDPG------AGGSSGDVEANPGEA-------NGCSP-HVDLVRQARASVEFRVARRRYRDELEHAA------VLAFSGGSGLEEAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAVKAENIEALGVSSRSTAVAAAXXXAVTAAKGPSGVRTRAANGAPVSHLFRARVDAAPGAVPKSSRDKEIAR------------------------------------------------------------------------------PLMVRAIRRRRLALRRRWEELGDRYAGLHNAWQGDMVRWEQKMEREEAKEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLRSERRGGRRLSDVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDGLPARCRGLAPSIACPAGCNCPAAAEAERKRSNLWTDVEKCIFLDKFLHHPKNFSRIASFLPKKSPEDVVQFYYDSKTSIDYKALLKEAVNRNK 3279 RQ PS +ELR+LT GTEVEERRTLAALRDLEACLEE ++AAA A AE A +V A +A +SRE EE G + T AVXXXXX A LPA+L ALGL G GGS+ A G NG SP HVDLVRQARASVEFRVARRR++ ELE+AA V+ + G + +AAG AV A E G S S A XX A KGPSG+RTR GAPVSHLFRARVDAAPG VPKS RD IAR P+M RAIRRR+L LRRRWE+LGD YAGLHNAW DM+RWE+KME E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+SLRSERRGGRRLSDVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTD LPARCRGL ACPAGCNCPAA EAERK NLWTDVEKCIFLDKFLHHPKNF RIASFLP+KSPEDVVQFYYDSKTSIDYK LLKEAVNRNK Sbjct: 1521 RQCHPSRKELRRLTSGTEVEERRTLAALRDLEACLEEGRIAAATAASTPAVEAEKA----LVVPDASSSQA------KSSREANNPGTEEIIPXXXXXXX-XGGTLTPAVXXXXXTAVAALPAELATALGLAEGDGKRGEGGGSNQPAVAGGGGVGLDHEGRNGFSPPHVDLVRQARASVEFRVARRRHKGELENAAAAAATLVVGGTPGPPVGKAAGAAPVAVTARSEHGGPDEASAKGLPGPSQSPP------AVVAT--ERAGASPGSKAA----XXXXXARKGPSGLRTRVPTGAPVSHLFRARVDAAPGGVPKSGRDVAIARVMRENQARAVAAQAELDERLLGLPRNTSPSLSGEAAAAAAAAQASALGTXXXXXXXXXXXXXXXXXXXIHAARLRELKPVMTRAIRRRQLELRRRWEKLGDEYAGLHNAWHVDMLRWEEKMEEE--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLRSERRGGRRLSDVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDALPARCRGLPADAACPAGCNCPAAVEAERKLLNLWTDVEKCIFLDKFLHHPKNFMRIASFLPRKSPEDVVQFYYDSKTSIDYKTLLKEAVNRNK 2160
BLAST of mRNA_L-elsbetiae_contig11884.1608.1 vs. uniprot
Match: W7U1T9_9STRA (Nuclear receptor corepressor 1-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1T9_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.310e-28 Identity = 73/154 (47.40%), Postives = 97/154 (62.99%), Query Frame = 1 Query: 2800 RGGRRLSDVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDGLPARCRGLAPSIACPAGCNCPAAAEAERKRSNLWTDVEKCIFLDKFLHHPKNFSRIASFLPKKSPEDVVQFYYDSKTSIDYKALLKE 3261 RGG D S+Y+ + + ++ E K K + RI +G E+P+ML+ R E+ D+ + T+DG P RC + C A CNCP A E + N W+D+EKCIFLDKFL +PKNF +IASFL +KS DV++FYYDSK I YKALLKE Sbjct: 947 RGG----DFAGSEYDVSLITREIEKKEKMKIRIEQGGAEIPTMLSLSGRFGTHEFSDTSSGPLTSDGGPMRCASRTLTEKCTADCNCPRAVERRSRYVNPWSDMEKCIFLDKFLQYPKNFRKIASFLRRKSTHDVIEFYYDSKQCIHYKALLKE 1096
BLAST of mRNA_L-elsbetiae_contig11884.1608.1 vs. uniprot
Match: A0A4D9CZ43_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ43_9STRA) HSP 1 Score: 133 bits (334), Expect = 9.680e-28 Identity = 72/154 (46.75%), Postives = 96/154 (62.34%), Query Frame = 1 Query: 2800 RGGRRLSDVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDGLPARCRGLAPSIACPAGCNCPAAAEAERKRSNLWTDVEKCIFLDKFLHHPKNFSRIASFLPKKSPEDVVQFYYDSKTSIDYKALLKE 3261 RGG D S+ + + ++ E+K K + RI +G E+P+ML+ R E+ D+ + T+DG P RC + C A CNCP A E + N W+D+EKCIFLDKFL +PKNF +IASFL +KS DV++FYYDSK I YKALLKE Sbjct: 644 RGG----DFAGSENDVTLITREIEEKEKMKVRIEQGGAEIPTMLSLSGRFGTHEFFDTSSGPLTSDGGPMRCASRTLTEKCTADCNCPRAVERRSRYVNPWSDMEKCIFLDKFLQYPKNFRKIASFLRRKSTHDVIEFYYDSKQCIHYKALLKE 793
BLAST of mRNA_L-elsbetiae_contig11884.1608.1 vs. uniprot
Match: A0A836CMK7_9STRA (SANT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMK7_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.580e-22 Identity = 59/130 (45.38%), Postives = 77/130 (59.23%), Query Frame = 1 Query: 2893 RIRKGAVEVPSMLTAVERRQLPE-YRDSWNSRGTTDGLPARCRGLAPSIACPAGCNCPAAAEAERKRSNLWTDVEKCIFLDKFLHHPKNFSRIASFLPKKSPEDVVQFYYDSKTSIDYKALLKEAVNRNK 3279 RI G V P + A+ ++ + + R TTDG P CR + +CP CNC E + + N WTD+EKCIFLD+FL PK+F RIA L KS D V FYYDSK +IDYKA+L+E V+R + Sbjct: 14 RITNGKVPPPVQVCALAQKHSGGGFVGCQHDRTTTDGRPPLCRLRPVNRSCPPHCNCLKEVERQGRLVNPWTDMEKCIFLDQFLLFPKDFGRIARALANKSVRDCVAFYYDSKATIDYKAVLREHVSRRR 143
BLAST of mRNA_L-elsbetiae_contig11884.1608.1 vs. uniprot
Match: A0A7S1C6Z3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6Z3_9STRA) HSP 1 Score: 115 bits (287), Expect = 2.750e-22 Identity = 71/170 (41.76%), Postives = 93/170 (54.71%), Query Frame = 1 Query: 2779 SSLRSERRGGRRLS----DVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDGLPARCRGLAPSIACPA-----GCNCPAAAEAERKRSNLWTDVEKCIFLDKFLHHPKNFSRIASFLPKKSPEDVVQFYYDSKTSIDYKALLKE 3261 SSL R RLS DV R+DYE+ +++++ K + E +K + + E R + R + N+ +TDG ARC GLAP CP GCNC E ER+R N WTD+EK IF+D+FL HPKNF +IA L K D V FYYD K +K LL+E Sbjct: 79 SSLLGGERASSRLSASRSDVARTDYEQEQLLQELMLKEQREASRQKTMMRKVTEQLDYEERCVQAMRANDNNIYSTDGAYARCFGLAPDEPCPQIPGYIGCNCSRQVEIERRRVNPWTDLEKLIFIDRFLQHPKNFHKIAKHLANKDARDCVSFYYDVKKLAGFKRLLRE 248
BLAST of mRNA_L-elsbetiae_contig11884.1608.1 vs. uniprot
Match: A0A7S1G4K6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4K6_9STRA) HSP 1 Score: 115 bits (287), Expect = 3.030e-22 Identity = 71/170 (41.76%), Postives = 93/170 (54.71%), Query Frame = 1 Query: 2779 SSLRSERRGGRRLS----DVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDGLPARCRGLAPSIACPA-----GCNCPAAAEAERKRSNLWTDVEKCIFLDKFLHHPKNFSRIASFLPKKSPEDVVQFYYDSKTSIDYKALLKE 3261 SSL R RLS DV R+DYE+ +++++ K + E +K + + E R + R + N+ +TDG ARC GLAP CP GCNC E ER+R N WTD+EK IF+D+FL HPKNF +IA L K D V FYYD K +K LL+E Sbjct: 79 SSLLGGERASSRLSASRSDVARTDYEQEQLLQELMLKEQREASRQKTMMRKVTEQLDYEERCVQAMRANDNNIYSTDGAYARCFGLAPDEPCPQIPGYIGCNCSRQVEIERRRVNPWTDLEKLIFIDRFLQHPKNFHKIAKHLANKDARDCVSFYYDVKKLAGFKRLLRE 248
BLAST of mRNA_L-elsbetiae_contig11884.1608.1 vs. uniprot
Match: A0A6U3TBG9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TBG9_9STRA) HSP 1 Score: 114 bits (285), Expect = 7.810e-22 Identity = 70/174 (40.23%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 2782 SLRSERRG--------GRRLSDVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDGLPARCRGLAPSIACPAGCNCPAAAEAERKRSNLWTDVEKCIFLDKFLHHPKNFSRIASFLPKKSPEDVVQFYYDSKTSIDYKALLKEAVNRNK 3279 S R RRG G SDVVRS+YE+ +++ + K E+RI G +P +E+ YR+S +SR D P E ER+ + W+D+EKCIFLD+FL HPK+F +IASFL K+ +D V FYYDSK SI YKA LKE + R K Sbjct: 1002 SYRRPRRGMGAACSQSGMGASDVVRSEYEQEQIIAEITAKEAMEKRITHGGSALPRQRCQLEKELYVSYRNSQSSRRIFD---------------------PLLEEEERRNVSAWSDMEKCIFLDRFLQHPKDFRKIASFLRNKTTKDCVSFYYDSKQSIPYKAALKEHLQRKK 1154
BLAST of mRNA_L-elsbetiae_contig11884.1608.1 vs. uniprot
Match: B8C3M2_THAPS (MYB DNA binding protein/ transcription factor-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3M2_THAPS) HSP 1 Score: 95.5 bits (236), Expect = 1.890e-19 Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 Query: 3073 EAERKRSNLWTDVEKCIFLDKFLHHPKNFSRIASFLPKKSPEDVVQFYYDSKTSIDYKALLKEAVNR 3273 E ERK N+W+D+EKCIFLD+FLHHPK+F +IASFL K+ +D +QFYYDSK +I YK LKE + R Sbjct: 59 EEERKHVNVWSDMEKCIFLDRFLHHPKDFRKIASFLKNKTTKDCIQFYYDSKKTIPYKHALKEFLQR 125
BLAST of mRNA_L-elsbetiae_contig11884.1608.1 vs. uniprot
Match: A0A7S3LNH2_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LNH2_9STRA) HSP 1 Score: 104 bits (260), Expect = 2.630e-19 Identity = 63/188 (33.51%), Postives = 92/188 (48.94%), Query Frame = 1 Query: 2821 DVVRSDYEEAEVVKKFEDKHKEEERIRKGAVEVPSMLTAVERRQLPEYRDSWNSRGTTDGLPARCRGLAPSIACPA----------------------------------GCNCPAAAEAERKRSNLWTDVEKCIFLDKFLHHPKNFSRIASFLPKKSPEDVVQFYYDSKTSIDYKALLKEAVNRNKV 3282 D V S++E+ +K+ E+K + E+ A +P M+ E R + + N+R +TDG C+ + ++C GCNC A + N WTD+EKCIFLDKFL +PKNF +I++FL KS +DVV+FYYDSK + YK +L E R K+ Sbjct: 388 DFVGSEWEQERRLKELEEKERREQNRIINAAVIPDMILTKEARDRTFFNSNNNARLSTDGGVPLCQDVTDGLSCTIAASKRLRVLFNKGVKRTSNKTWSEHIDYTQPSVIGCNCARALNLAEQSVNPWTDLEKCIFLDKFLQYPKNFYKISTFLRNKSAKDVVRFYYDSKKTCPYKQILIEQHQRRKI 575 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11884.1608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11884.1608.1 >prot_L-elsbetiae_contig11884.1608.1 ID=prot_L-elsbetiae_contig11884.1608.1|Name=mRNA_L-elsbetiae_contig11884.1608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1096bp APAPPAPPPSRFTLMLQGGSRRLGWGMGIGSKLSADEKATEAAAAIAAAEback to top mRNA from alignment at L-elsbetiae_contig11884:574..4464- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig11884.1608.1 ID=mRNA_L-elsbetiae_contig11884.1608.1|Name=mRNA_L-elsbetiae_contig11884.1608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3891bp|location=Sequence derived from alignment at L-elsbetiae_contig11884:574..4464- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig11884:574..4464- >mRNA_L-elsbetiae_contig11884.1608.1 ID=mRNA_L-elsbetiae_contig11884.1608.1|Name=mRNA_L-elsbetiae_contig11884.1608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6576bp|location=Sequence derived from alignment at L-elsbetiae_contig11884:574..4464- (Laminarionema elsbetiae ELsaHSoW15)back to top |