mRNA_L-elsbetiae_contig1188.1605.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1188.1605.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE) HSP 1 Score: 517 bits (1332), Expect = 1.800e-169 Identity = 320/528 (60.61%), Postives = 368/528 (69.70%), Query Frame = 1 Query: 1 MMGKKTSVAALACVTIALFASTITPAGAQQMCDNGLEGIQSSSLNACCVAECGLCGGVGCTPANTSTLTSADCCATEIVEAGTLCSVSGAAPCIVTTDPAPATSVCDNGQTGVQDPDTDVCCPLVCGESCGGVGCGAIAGVADSANQCCAANIFASERVCSNDVPAPCVQVASAADNSTSCSNGFAGIEDPAKLICCDAACGQCGGPGCGNIPGFTSQECCSDEIEASGQLCSVTGAAPCRVDPPAVIPSTCPNGLPGVQDGSVCCAEACNLQCGGVGCGTIPGTNGADDCCSDTILISGAPCGVGVEAPCIMPNGTFTNAPVAAPTVPP---PGVTLAPAAAGAGGVTEAPVAGTRDFEFTQTPTAAGSVDGANEVALSAGFRTVENKHETVHRKPLS---LYAEAGTIAPDGAAAGXXXXXXXXXXXX------DGSRDADLGDATPSPSAGKNRQADFEGEDINGDGVIDGADVIGATPVPSSTDADAGA-ASGNGAMSAVNLPAG-SVYAGVLGVAMAVGGMLL 1542 M+GK TS AL CV IAL T+TPAGA +C NGLEGIQS+SL+ CCV C +CGGV CTPANTS+LTSADCCATEIVE+GT C VS AAPCI+TT A SVC+NGQTGV DPDTDVCCPL CG+SCGG GCG+I GV +A QCC++ I S VCS+ V APCV A+ ADNST+CSNG GIEDP LICCDAACG CGGPGCGN+ G T +CCS+EI LCSVT APC +DPP + STCPNGL GVQDGSVCCAE CN CGG GCG+I GTNGA+DCCS+TIL +G C GV APCIM NGT+T+AP+AAPT PP PG T+AP A A TEAPVAGTR+F FTQ PT V+G + + SA V + + + + T AP AA XXXXXXXXXXXX DG+RD +GD T +P+ R+ ED NGDGVID AD I ATP PS+TD DAGA A GNGA+S L G S + GV+ AMA GGMLL Sbjct: 1 MLGKATSFTALVCVAIALLVGTMTPAGA--VCSNGLEGIQSTSLDVCCVEGCEVCGGVDCTPANTSSLTSADCCATEIVESGTFCDVSMAAPCIITTAAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGV--NATQCCSSLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCCSEEIAVVNDLCSVTNEAPCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIMLNGTYTDAPMAAPTFPPAAAPGTTVAPGAVAA---TEAPVAGTREFRFTQAPTQLLDVNG-DGLVNSADTGIVGDXXXXXXXXXXXXXXVISASPTAAPTPAATXXXXXXXXXXXXXXXGGAADGTRD--IGDVTDAPTPSPVRET-LSPEDTNGDGVIDSADGIEATPGPSATD-DAGATAEGNGAVSIARLSTGGSAFVGVVVAAMAFGGMLL 516
BLAST of mRNA_L-elsbetiae_contig1188.1605.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI) HSP 1 Score: 337 bits (865), Expect = 9.200e-102 Identity = 202/372 (54.30%), Postives = 237/372 (63.71%), Query Frame = 1 Query: 13 KTSVAALACVTIALFASTITPAGAQQMCDNGLEGIQSSSLNACCVAECGLCGGVGCTPANTSTLTSADCCATEIVEAGTLCSVSGAAPCIVTTDPAPATSVCDNGQTGVQDPDTDVCCPLVCGESCGGVGCGAIAGVADSANQCCAANIFASERVCSNDVPAPCVQVASAADNSTSCSNGFAGIEDPAKLICCDAACGQCGGPGCGNIPGFTSQECCSDEIEASGQLCSVTGAAPCRVDPPAVIPSTCPNGLPGVQDGSVCCAEACNLQCGGVGCGTIPGTNGADDCCSDTILISGAPCGVGVE-APCIMPNGTFTNAPVAAPTV---------PPPGVTLAPAAAGAGGVTEAPVAGTRDFEF-TQTPTAA 1095 K + AAL V +AL S GAQ C G+ G++S+SL+ CC ECG CGGVGCTPANTS+LT+ DCCATEI E+G +CS +G APCI++T+ A A SVCDNGQTGVQDPDTDVCCPL CGESCGG GCG I GV A+QCCA+ I S VC + + APC QVA A +S CSNGF GIE+ +CCD AC CGG CGN+ G T +CC+ I A+ +LCS G+APC VDPP V STC NGL GV GSVCCAE CN TNGA+DCCS TIL + C V+ APC+M GTFT AP PTV P VT+AP T AP G+RD +F T PT A Sbjct: 3 KMNFAALLGVVLALAGSV----GAQT-CAGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCILSTEAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGV--DASQCCASIIEQSGIVCGDGIEAPCTQVAVAVADSV-CSNGFPGIENEDATVCCDPACVVCGGSTCGNVAGLTGADCCTGTIIANDELCSEKGSAPCVVDPPEVTASTCANGLAGVSSGSVCCAEVCNGVXXXXXXXXXXXTNGAEDCCSATILAANIAC---VDTAPCVMVEGTFTPAPAVVPTVAATTTAPLAPGETVTMAPTPTSQ---TAAPTPGSRDLDFGTGVPTPA 360
BLAST of mRNA_L-elsbetiae_contig1188.1605.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI) HSP 1 Score: 261 bits (668), Expect = 4.550e-77 Identity = 141/204 (69.12%), Postives = 158/204 (77.45%), Query Frame = 1 Query: 1 MMGKKTSVAALACVTIALFASTITPAGAQQMCDNGLEGIQSSSLNACCVAECGLCGGVGCTPANTSTLTSADCCATEIVEAGTLCSVSGAAPCIVTTDPAPATSVCDNGQTGVQDPDTDVCCPLVCGESCGGVGCGAIAGVADSANQCCAANIFASERVCSNDVPAPCVQVASAADNSTSCSNGFAGIEDPAKLICCDAACGQC 612 M+GK TS AL CV IAL T+TPAGA +C NGLEGIQS+SL+ACCV ECGLCGGVGCTPANTS+LTSADCCATEI+E+GTLC VS AAPCI+TT A SVC+NGQTGVQDPDTDVCCPLVCG+SCGG GCG++AGV A QCC+ I S VCS+ V APCV A+ ADNST+CSNG GIEDP LI C C Sbjct: 1 MLGKATSFTALVCVAIALLVGTMTPAGA--VCSNGLEGIQSTSLDACCVEECGLCGGVGCTPANTSSLTSADCCATEIIESGTLCEVSMAAPCIITTAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGV--DATQCCSNLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLIWYVWMCSAC 200
BLAST of mRNA_L-elsbetiae_contig1188.1605.1 vs. uniprot
Match: D8LML4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI) HSP 1 Score: 214 bits (545), Expect = 4.460e-59 Identity = 155/284 (54.58%), Postives = 183/284 (64.44%), Query Frame = 1 Query: 724 VDPPAVIPSTCPNGLPGVQDGSVCCAEACNLQCGGVGCGTIPGTNGADDCCSDTILISGAPCGVGVEAPCIMPNGTFTNAPVAAPTVPP---PGVTLAPAAAGAGGVTEAPVAGTRDFEFTQTPTAAGSVDGANEVALSAGFRTVENKHETVHRKPLSLYAEAG-TIAPDGAAAGXXXXXXXXXXXX------DGSRDADLGDATPSPSAGKNRQADFEGEDINGDGVIDGADVIGATPVPSSTDADAGAASGNGAMSAVNLPAG-SVYAGVLGVAMAVGGMLL 1542 +DPP + STCPNG+ GVQDGSVCCAE CN CGG GCG+I GTNGA+DCCS TIL +G C VGV APCIM NGT+T+AP+AAPT PP PG T+AP GA TEAP+AGTR+F+FTQ PT V+G + + SA V + + V + A T AP AA XXXXXXXXXXXX DG+RD +GD T +P+ R+ D NGDGVID AD + ATPVPS+TD A GNGA+S LP G S GV+ AMA GGMLL Sbjct: 1 MDPPDFVASTCPNGIAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAPMAAPTFPPVAAPGTTVAP---GAVATTEAPLAGTREFQFTQAPTQLLDVNG-DGLVNSADTGIVGDTNGVVDSMDEVVVLSASPTAAPTPAAXXXXXXXXXXXXXXXXGGAADGTRD--IGDVTDAPTPSPVRETSSPA-DTNGDGVIDSADGVEATPVPSATDDADATAEGNGAVSMTRLPTGGSACVGVVVAAMAFGGMLL 277
BLAST of mRNA_L-elsbetiae_contig1188.1605.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 181 bits (458), Expect = 3.120e-42 Identity = 125/299 (41.81%), Postives = 154/299 (51.51%), Query Frame = 1 Query: 91 MCDNGLEGIQSSSLNACCVAECGLCGGVGCTPANTSTLTSADCCATEIVEAGTLCSVSGAAPCIVTTDPAPATSVCDNGQTGVQDPDTDVCCPLVCGESCGGVGCGAIAGVADSANQCCAANIFASERVCSNDVPAPCVQVASAADNSTSCSNGFAGIEDPAKLICCDAACGQCGGPGCGNIPG-FTSQECCSDEIEASGQLCSVTGAAPCRVDPPAVIPSTCPNGLPGVQDGSVCCAEACNLQCGGVGCGTIPGTNGADDCCSDTILISGAPCGVGVEAPCIMPNGTF-TNAPVAAPT 981 +C NG+ GIQ+ NACC+AECG CGG GC L +CC +EI + G LCSV+ APC+V VC NG G+Q + CC CG +CGG GC G N CC + I +CS + APCV CSNG GI+ CC A CG CGG GC + G + CC EIE G+LCSVT APC VD C NG+PG+Q G+ CC C CGG GC + G GAD+CC I G C + APCI+ + + +PVA PT Sbjct: 2691 VCSNGIPGIQTG--NACCLAECGTCGGRGCAEYGGG-LGEDNCCQSEIEDFGELCSVTMEAPCVVD-------DVCSNGIPGIQT--GNACCLAECG-TCGGRGCAEYGGGLGEDN-CCQSEIEDFGELCSVTMEAPCVV-------DDVCSNGIPGIQT--GNACCLAECGGCGGTGCAQLGGGLGADNCCMSEIEDFGELCSVTMEAPCVVD------DVCSNGIPGIQTGNACCLAECG-GCGGTGCAQLGGGLGADNCCMSEIEDFGELCSATMTAPCIVDSVSGPAPSPVAMPT 2959
BLAST of mRNA_L-elsbetiae_contig1188.1605.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 161 bits (408), Expect = 2.390e-36 Identity = 132/394 (33.50%), Postives = 160/394 (40.61%), Query Frame = 1 Query: 91 MCDNGLEGIQSSSLNACCVAECGLCGGVGCTPANTSTLTSADCCATEIVEAGTLCSVSGAAPCIVTTDPAPATSVCDNGQTGVQDPDTDVCCPLVCGESCGGVGCGAIAGVADSANQCCAANIFASERVCSNDVPAPCVQVASAA----------------------------------------------------------DNSTSCSNGFAGIEDPAKLICCDAACGQCGGPGCGNIPGFTSQE-CCSDEIEASGQLCSVTGAAPCRVDPPAVIPST--------------------------------------CPNGLPGVQDGSVCCAEACNLQCGGVGCGTIPGTNGADDCCSDTILISGAPCGVGVEAPCIMPNGTFTNAPVAAPT 981 MC NG+ GIQS NACC+AECG CGG GC L +CC +EI + G LCSV AAPC+V +C NG G+Q + CC CG CGG GC + G N CC + I +CS + APCV SA S +CSNG GI+ CC A CG CGG GC + G ++ CC EIE G+LCSV AAPC VD A PS C NG+PG+Q G+ CC C CGG GC + G G D+CC I G C V + APC++ +PVA PT Sbjct: 1575 MCSNGIPGIQSG--NACCLAECGGCGGSGCAQLGGG-LGEDNCCQSEIEDFGELCSVKMAAPCVVD-------DMCSNGIPGIQS--GNACCLAECG-GCGGSGCAQLGGGLGEDN-CCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTCSNGIPGIQS--GNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDMCSNGIPGIQSGNACCLAECG-GCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPT 1951
BLAST of mRNA_L-elsbetiae_contig1188.1605.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI) HSP 1 Score: 152 bits (385), Expect = 4.530e-35 Identity = 111/260 (42.69%), Postives = 138/260 (53.08%), Query Frame = 1 Query: 304 ATSVCDNGQTGVQDPDTDVCCPLVCGESCGGVGCGAIAGVADSANQCC-------AANIFASERVC--SNDVPAP---CVQVASAADNSTSCSNGFAGIEDPAKLICCDAACGQCGGPGCGNIPGFT-SQECCSDEIEASGQLCSVTGAAPCRVD----PPAVI---------PSTCPNGLPGVQDGSVCCAEACNLQCGGVGCGTIPGTNGADDCCSDTILISGAPCGVGVEAPCIMPNGTFTNAPV------AAPTVP 987 A S C NG GV D DVCC CG+ CGG GCGAIAG + A+ CC + +F E C + P+P +A ++CSNG AG +D A ICC CG+CGG GCG IPG S CC I A+G +C G APC ++ PAV+ STC NG+ G QDG CCA C QCGG GCG++PGT GA CCS + ++G C +PC++ N +T APV AAP VP Sbjct: 288 APSTCSNGIPGVSD--GDVCCLEACGQ-CGGEGCGAIAGT-NGASDCCPDTIKEESGGVFCGEAPCVMAGFTPSPLNPAFDGTAAPVAPSTCSNGIAGYQDGA--ICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVC---GEAPCIIEGYTPAPAVVGGGTTAPYGTSTCSNGILGYQDGPACCAANCG-QCGGGGCGSVPGTAGASACCSSDVELAGNLCSATGVSPCVIDN--YTPAPVVPDYGSAAPVVP 535
BLAST of mRNA_L-elsbetiae_contig1188.1605.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE) HSP 1 Score: 116 bits (290), Expect = 4.310e-26 Identity = 67/139 (48.20%), Postives = 82/139 (58.99%), Query Frame = 1 Query: 535 TSCSNGFAGIEDPAKLICCDAACGQCGGPGCGNIPGFT-SQECCSDEI--EASGQLCSVTGAAPCRVDP-------PA-------VIPSTCPNGLPGVQDGSVCCAEACNLQCGGVGCGTIPGTNGADDCCSDTILISG 900 ++CSNG G+ D +CC ACGQCGG GCG I G + +CC D I E+ G C G APC ++ PA V PSTC NG+PG QDG +CC E C +CGG GCGTIPGT G+D+CC IL +G Sbjct: 4 STCSNGIPGVSD--GEVCCLEACGQCGGVGCGAIAGTNGASDCCPDTIKEESGGVFC---GEAPCVMEGFTPSPLNPALDGTAAPVAPSTCSNGIPGYQDGVICCLEICG-RCGGDGCGTIPGTGGSDNCCPSDILAAG 136
BLAST of mRNA_L-elsbetiae_contig1188.1605.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 114 bits (286), Expect = 1.710e-22 Identity = 94/252 (37.30%), Postives = 118/252 (46.83%), Query Frame = 1 Query: 94 CDNGLEGIQSSSLNACCVAECGLCGGVGCTPANTSTLTSADCCATEIVEAGTLCSVSGAAPCIVTTD--------PAP--ATSVCDNGQTGVQDPDTDVCCPLVCGESCGGVGCGAIAGVADSANQCCAANIFASERVCSNDVPAPCVQVASAADNST----------------------SCSNGFAGIEDPAKLICCDAACGQCGGPGCGNIPGFTSQECCSDEIEASGQLCSVTGAAPCRVDPPAVIPST 753 CD G+ GIQ+S + CC C CGG GC+ + +CC + +G CSV+G APCIVT+ PAP A CD G GVQ +DVCC L CG SCGG GC G D+ CC I + CS APC+ ++ + ST +C G G++ A +CC +CG CGG GC + G CC EI + CSVTG APC V P PST Sbjct: 332 CDGGIVGIQASDV--CCSLSCESCGGSGCSGRDGG---EDECCGGGVRASGRDCSVTGEAPCIVTSPEPSTPAPTPAPTRAAGTCDGGIVGVQA--SDVCCALSCG-SCGGDGCSDRDGGEDN---CCGVEIRTANLDCSVTGEAPCI--VTSPEPSTXXXXXXXXXXXXXTPAPSRAAGTCEGGIVGVQ--ASNVCCALSCGSCGGDGCSDRDGG-EDNCCGVEIRTANLDCSVTGEAPCIVTSPE--PST 565
BLAST of mRNA_L-elsbetiae_contig1188.1605.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 2.010e-17 Identity = 75/220 (34.09%), Postives = 93/220 (42.27%), Query Frame = 1 Query: 82 AQQMCDNGLEGIQSSSLNACCVAECGLCGGVGCTPANTSTLTSADCCATEIVEAGTLCSVSGAAPCIVTTDPAPATSVCDNGQTGVQDPDTDVCCPLVCGESCGGVGCGAIAGVADSANQCCAANIFASERVCSNDVPAP--CVQVASAADNSTS--CSNGFAGIEDPAKLICCDAACGQCGGPGCGNIPGFTSQECCSDEIEASGQLCSVTGAAPCRVD 729 A Q C NG GI+ S ACCV++CG CGG GC+ + S LT DCC I++ G CS +G APC + D P+ S V + C ND P P + D+ T+ C+N G +A CG CGG GC PG T +CC +IE SG LCSVTG APC VD Sbjct: 17 AAQKCSNGFPGIEKSG--ACCVSDCGTCGGSGCS-SRESGLTGDDCCTKNILKQGAPCSATGHAPCFLDGDSTPSKSTPTESDGFVYEG-------------------------------------------CFNDKPEPDRLFSYVTTMDDMTTELCANECKGYAFFGLQWGREAGCGTCGGTGCSQRPGLTDSDCCIGKIEESGPLCSVTGKAPCFVD 190 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1188.1605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1188.1605.1 >prot_L-elsbetiae_contig1188.1605.1 ID=prot_L-elsbetiae_contig1188.1605.1|Name=mRNA_L-elsbetiae_contig1188.1605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=516bp MMGKKTSVAALACVTIALFASTITPAGAQQMCDNGLEGIQSSSLNACCVAback to top mRNA from alignment at L-elsbetiae_contig1188:5357..11785- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1188.1605.1 ID=mRNA_L-elsbetiae_contig1188.1605.1|Name=mRNA_L-elsbetiae_contig1188.1605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6429bp|location=Sequence derived from alignment at L-elsbetiae_contig1188:5357..11785- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1188:5357..11785- >mRNA_L-elsbetiae_contig1188.1605.1 ID=mRNA_L-elsbetiae_contig1188.1605.1|Name=mRNA_L-elsbetiae_contig1188.1605.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3096bp|location=Sequence derived from alignment at L-elsbetiae_contig1188:5357..11785- (Laminarionema elsbetiae ELsaHSoW15)back to top |