mRNA_L-elsbetiae_contig11878.1604.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11878.1604.1
Unique NamemRNA_L-elsbetiae_contig11878.1604.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11878.1604.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 6.630e-6
Identity = 26/39 (66.67%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:    2 VDVISKRCTHHGCTKRPSFGKAGGK-AENCRDHAKDGMV 115
            VDV+SKRC H GCTKRPS+G  G K AE C  HA  GMV
Sbjct:    2 VDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11878.1604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI6.630e-666.67EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11878contigL-elsbetiae_contig11878:1432..4427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1375
Cds size948
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11878.1604.1prot_L-elsbetiae_contig11878.1604.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11878 1750..4318 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815388.529139-UTR-L-elsbetiae_contig11878:1431..17491622815388.529139-UTR-L-elsbetiae_contig11878:1431..1749Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11878 1432..1749 -
1691682873.9605722-UTR-L-elsbetiae_contig11878:1431..17491691682873.9605722-UTR-L-elsbetiae_contig11878:1431..1749Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11878 1432..1749 -
1622815388.566613-UTR-L-elsbetiae_contig11878:4318..44271622815388.566613-UTR-L-elsbetiae_contig11878:4318..4427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11878 4319..4427 -
1691682874.0025215-UTR-L-elsbetiae_contig11878:4318..44271691682874.0025215-UTR-L-elsbetiae_contig11878:4318..4427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11878 4319..4427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815388.5387466-CDS-L-elsbetiae_contig11878:1749..18621622815388.5387466-CDS-L-elsbetiae_contig11878:1749..1862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11878 1750..1862 -
1691682873.9704187-CDS-L-elsbetiae_contig11878:1749..18621691682873.9704187-CDS-L-elsbetiae_contig11878:1749..1862Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11878 1750..1862 -
1622815388.5477526-CDS-L-elsbetiae_contig11878:2329..25601622815388.5477526-CDS-L-elsbetiae_contig11878:2329..2560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11878 2330..2560 -
1691682873.9796953-CDS-L-elsbetiae_contig11878:2329..25601691682873.9796953-CDS-L-elsbetiae_contig11878:2329..2560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11878 2330..2560 -
1622815388.556412-CDS-L-elsbetiae_contig11878:3714..43181622815388.556412-CDS-L-elsbetiae_contig11878:3714..4318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11878 3715..4318 -
1691682873.989656-CDS-L-elsbetiae_contig11878:3714..43181691682873.989656-CDS-L-elsbetiae_contig11878:3714..4318Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11878 3715..4318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11878.1604.1

>prot_L-elsbetiae_contig11878.1604.1 ID=prot_L-elsbetiae_contig11878.1604.1|Name=mRNA_L-elsbetiae_contig11878.1604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=316bp
MVNVSSKRCAQRDCRKQPSYGLAGSGKREFCKDHASRGMVDPPRGVPNRK
PSAGGRGGGSSTAVGDSAARRAGAGEKRGRSGARSSAADETSSASIRQAN
KRARRTGNTGTTPTPLAAAEETPPAGPVSAVETELADVRTMEPTETRGIA
APSRRAGLATTPARVGASSRAASVPGVACRARLAISSPLASGSSLDPAAA
RDRRRKSRDKMAGAGVTAAGSAEEKDGKDTTADGGDEAANAKRGRFRRTV
EMPDAAAVLTRVALSCKIEPIMERGEGSGSSSGQSPSCGTPVSVGCGAPV
GVACKQEPTDHGGGA*
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mRNA from alignment at L-elsbetiae_contig11878:1432..4427-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11878.1604.1 ID=mRNA_L-elsbetiae_contig11878.1604.1|Name=mRNA_L-elsbetiae_contig11878.1604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2996bp|location=Sequence derived from alignment at L-elsbetiae_contig11878:1432..4427- (Laminarionema elsbetiae ELsaHSoW15)
GGTGGATGTCATAAGCAAGAGATGCACTCACCACGGTTGCACCAAGCGGC
CATCATTCGGCAAGGCTGGCGGCAAGGCGGAGAACTGCCGTGACCATGCC
AAGGACGGGATGGTCAACGTGAGCAGCAAGAGGTGTGCCCAACGTGACTG
TCGCAAGCAGCCATCATACGGGTTGGCAGGCAGCGGGAAGCGCGAATTCT
GCAAAGATCATGCCTCGAGAGGCATGGTTGACCCACCACGCGGTGTTCCC
AACAGAAAGCCCTCTGCCGGCGGCAGGGGGGGTGGAAGCTCAACAGCAGT
TGGTGATAGTGCCGCCCGTCGTGCTGGTGCCGGCGAAAAGCGGGGCAGAA
GCGGCGCCCGTTCGTCAGCAGCGGACGAGACTTCCTCAGCCAGCATCCGG
CAGGCCAACAAGCGAGCCCGCCGCACCGGCAACACGGGCACGACCCCCAC
CCCACTCGCGGCCGCTGAAGAAACTCCTCCTGCAGGCCCGGTCTCTGCCG
TGGAGACCGAGTTGGCGGACGTTCGCACGATGGAACCCACGGAAACTCGA
GGAATCGCAGCACCATCAAGAAGAGCTGGATTGGCCACCACCCCCGCCAG
GGTTGGTGCATCGTCGCGGGCAGCGTCGGTGCCGGGGGTTGCGTGTAGGG
CCCGATTGGCGATCTCTTCCCCACTGGCGTCCGGCAGCAGCTTGGATCCC
GCCGCGGCAAGAGGTACGTCCCCGCAAAAGCAACTGCATGACATCGTGAA
CTTGTATCTGCATTTTTTTATTTCTTTTGAACCCGGCGTGCGGGTTGATC
ACCACCGGTTGCGTGTCTGGTTCCGCTGGCGGTGCTTACCCTACTTATTT
GCCAATGCATCCAACACTACTGCTGTGCCAGCAGCGCTTAGTCTCTTAGT
TCCCTGCCACCAGTGTTCTTGTTTGGCTGAAAGGTGAACGTAGTGCTGTT
GCCCTGCTGGTTCGGCGTGAACACACCGCCGCTTTTGTGGGGGAATGTGT
GTGTGTGCGTGCGTGTCCTTCCCTTTTATTTTGGCGACAGTCCCCCCACG
TGGAGACGGGTACTACACCTTGCGGTGTACTTAGAGGCACTACCTACACT
TTGCAGTGCATGTCTGTAAACTAGAACCAACCGGGGTCACACAGGAGAGG
GTGAACACTGGGGCTTTTTCTTCTTTTTTATTTTCTTTTCTTGCCCCACC
TTCCTCCTGCGGTGCTTGCCTTCATTTTTATCGCGAGAAGGGTTCAGCTG
TCCCTTTCCTTCGTCAACGTGACTACGTCGAAGTTTGGTATACTCACAAG
CTTTTTAGCTTTTATCACTTTCACCTGCTAAGTCGCAAAATAAACACTTC
TGCTTGGGATTGAACTCCCGACTTTGCTGCGACTGGGTTCGAGGTTGAAC
CACTAGACCGCCGCGGCGACCGGCTTATGGTGGGGGAATACACCACGCAT
GGTCCCATCAAAAAATGTTCACGGGGAGCACTCTGATTATTGCTTCGTTT
GAGCCTCAACCCGTTGTGTGTCCGTGCGCGAGCCATTTGCGCCTCCTAGT
TTACACCCCGACGGTTGACATCTGTTGTTTTTCCTGTGCCATTAAGATGC
AGTATCTTGCCCGACGCCCTCGCGGTAGTGGGGCACGGTGCGCTTGCAGA
CAGTTCAGTTGTGCGACCTATCTATCCTTTGGCGCTCGCGGTCGTGGCAC
ACAAAGCGCCACCGCATCCCGGAAACATGTGGCTGTTTTGTTTCGGTCTC
ACCTCCTGAGGGCCGGATTATAACCCTTTTCCGGCTTGCCTCGGTGCTTT
CTCCCACAATGCGCTCGCTCCCTCTCCCTCTGACGACGAAATTGTTTCGC
GGCGGTGGCGAGAGCAGATCGGAGGAGGAAGAGCAGAGACAAAATGGCAG
GCGCTGGCGTGACTGCAGCAGGGAGCGCGGAAGAAAAAGATGGAAAAGAC
ACGACCGCGGATGGCGGCGATGAGGCCGCCAACGCCAAGCGGGGAAGATT
CCGCCGGACGGTCGAGATGCCAGACGCGGCAGCCGTCCTGACGAGAGTGG
CGCTCTCCTGCAAGATCGAGCCCATCATGGAGAGAGGAGAGGGTTCAGGT
AGGGTGGAGACGAGAATGCGCGGTCGTGCTAAATAGGACATTGCTCCTCT
CTGCACCTATGTAGTCTCTCTTCGAAACAAGCTCGAGCAATGTTGGTGAA
AAACAAATCGTCCGCCCCTGGTTGTTCATCTCGATGTTTTTCTCATGCGT
GGAGTTTGGAGGAAAGGGCGAGCGGATCAGTCGATCTAGTCGTTTCTGAG
TCTCGTCGGGTTTTGCAAGTCTGCACGCAGCGCGGAAAAGCTTGGTTATG
CACGCTTGCTTGCGGTGCTTCTTGCCGGCTTCTTTTTCTGCCGTCCGGCA
TGCAGCCGCTGAAGTAGTGAGACAACAGAATCGCTACCTATCTACCTGAT
GAATTGTCGGTGGAACTGACGATCGGGCCGAAAGCACGCAAGTACGTACG
TTGCAGCCCCGCCCGCTAACGCTATACCTTTATTTATGTACGTCAACTCT
CCAAAACTTGTTCAGGATCGTCGTCGGGGCAATCCCCGTCTTGCGGCACC
CCTGTGTCTGTCGGGTGTGGCGCGCCAGTGGGAGTCGCTTGCAAGCAGGA
GCCCACGGACCATGGGGGGGGTGCGTGACGATTGATTCCAAGACCCTGTG
TATTGGTAATCAAATTGTGTTTTCTCCAGAGGGAGCTGGCGAGTCGAGTG
CTGAAAATCTCGGCTCTGCGGACTACGTAGTGTACGGTATATTGGGAAGT
ATCTGGAGTTGTCAGGCATGAAAGTCGTGGAGCTTGTCATGCTCGTTGGA
AGTTGGAAAGTTCCTCTGACGACAATTAATGAGCCTTCGGTTCCGTTTCG
GGCTGTTTTTCGTGGTGCGTCGAAGTGACAGCACGGCCGGGTTCCTACAT
GTATGTGGTGCGGAACGAAGGTCTTTTGGGTCAGTCAACACGTACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11878:1432..4427-

>mRNA_L-elsbetiae_contig11878.1604.1 ID=mRNA_L-elsbetiae_contig11878.1604.1|Name=mRNA_L-elsbetiae_contig11878.1604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1896bp|location=Sequence derived from alignment at L-elsbetiae_contig11878:1432..4427- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCAACGTGAGCAGCAAGAGGTGTGCCCAACGTGACTGTCGCAAGCA
GCCATCATACGGGTTGGCAGGCAGCGGGAAGCGCGAATTCTGCAAAGATC
ATGCCTCGAGAGGCATGGTTGACCCACCACGCGGTGTTCCCAACAGAAAG
CCCTCTGCCGGCGGCAGGGGGGGTGGAAGCTCAACAGCAGTTGGTGATAG
TGCCGCCCGTCGTGCTGGTGCCGGCGAAAAGCGGGGCAGAAGCGGCGCCC
GTTCGTCAGCAGCGGACGAGACTTCCTCAGCCAGCATCCGGCAGGCCAAC
AAGCGAGCCCGCCGCACCGGCAACACGGGCACGACCCCCACCCCACTCGC
GGCCGCTGAAGAAACTCCTCCTGCAGGCCCGGTCTCTGCCGTGGAGACCG
AGTTGGCGGACGTTCGCACGATGGAACCCACGGAAACTCGAGGAATCGCA
GCACCATCAAGAAGAGCTGGATTGGCCACCACCCCCGCCAGGGTTGGTGC
ATCGTCGCGGGCAGCGTCGGTGCCGGGGGTTGCGTGTAGGGCCCGATTGG
CGATCTCTTCCCCACTGGCGTCCGGCAGCAGCTTGGATCCCGCCGCGGCA
AGAGATGGTCAACGTGAGCAGCAAGAGGTGTGCCCAACGTGACTGTCGCA
AGCAGCCATCATACGGGTTGGCAGGCAGCGGGAAGCGCGAATTCTGCAAA
GATCATGCCTCGAGAGGCATGGTTGACCCACCACGCGGTGTTCCCAACAG
AAAGCCCTCTGCCGGCGGCAGGGGGGGTGGAAGCTCAACAGCAGTTGGTG
ATAGTGCCGCCCGTCGTGCTGGTGCCGGCGAAAAGCGGGGCAGAAGCGGC
GCCCGTTCGTCAGCAGCGGACGAGACTTCCTCAGCCAGCATCCGGCAGGC
CAACAAGCGAGCCCGCCGCACCGGCAACACGGGCACGACCCCCACCCCAC
TCGCGGCCGCTGAAGAAACTCCTCCTGCAGGCCCGGTCTCTGCCGTGGAG
ACCGAGTTGGCGGACGTTCGCACGATGGAACCCACGGAAACTCGAGGAAT
CGCAGCACCATCAAGAAGAGCTGGATTGGCCACCACCCCCGCCAGGGTTG
GTGCATCGTCGCGGGCAGCGTCGGTGCCGGGGGTTGCGTGTAGGGCCCGA
TTGGCGATCTCTTCCCCACTGGCGTCCGGCAGCAGCTTGGATCCCGCCGC
GGCAAGAGATCGGAGGAGGAAGAGCAGAGACAAAATGGCAGGCGCTGGCG
TGACTGCAGCAGGGAGCGCGGAAGAAAAAGATGGAAAAGACACGACCGCG
GATGGCGGCGATGAGGCCGCCAACGCCAAGCGGGGAAGATTCCGCCGGAC
GGTCGAGATGCCAGACGCGGCAGCCGTCCTGACGAGAGTGGCGCTCTCCT
GCAAGATCGAGCCCATCATGGAGAGAGGAGAGGGTTCAGATCGGAGGAGG
AAGAGCAGAGACAAAATGGCAGGCGCTGGCGTGACTGCAGCAGGGAGCGC
GGAAGAAAAAGATGGAAAAGACACGACCGCGGATGGCGGCGATGAGGCCG
CCAACGCCAAGCGGGGAAGATTCCGCCGGACGGTCGAGATGCCAGACGCG
GCAGCCGTCCTGACGAGAGTGGCGCTCTCCTGCAAGATCGAGCCCATCAT
GGAGAGAGGAGAGGGTTCAGGATCGTCGTCGGGGCAATCCCCGTCTTGCG
GCACCCCTGTGTCTGTCGGGTGTGGCGCGCCAGTGGGAGTCGCTTGCAAG
CAGGAGCCCACGGACCATGGGGGGGGTGCGTGAGATCGTCGTCGGGGCAA
TCCCCGTCTTGCGGCACCCCTGTGTCTGTCGGGTGTGGCGCGCCAGTGGG
AGTCGCTTGCAAGCAGGAGCCCACGGACCATGGGGGGGGTGCGTGA
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