mRNA_L-elsbetiae_contig11853.1593.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11853.1593.1
Unique NamemRNA_L-elsbetiae_contig11853.1593.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11853.1593.1 vs. uniprot
Match: A0A6H5JK53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK53_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.770e-14
Identity = 51/126 (40.48%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  289 GTRPMHLAVKNGDKRALRLLLGADAGPNLADRNGLTPLMATCTVWNGVAVARELLRAGADPCPADRYGATAVHYAAREAHRDLVPVLLSKGPEALNRLDRGGRTPLCVAAESGRAVTVRRLLSLGA 666
            G+R +H A+   +  AL +LL A A  N  D  G TPLM T     G  +AREL + GA P   +  G +A+H AA   + +++ V+L+  P ALN LD  G TP+ +AA  G+   V  LLS GA
Sbjct:   75 GSRAIHAAISGENPTALSVLLEAGADFNSRDGAGETPLMLTALADTGALLARELFKVGASPFVKNADGMSAMHVAAGLGNLEVMTVILTNTPSALNVLDNKGFTPMGIAALRGQRRAVFHLLSAGA 200          
BLAST of mRNA_L-elsbetiae_contig11853.1593.1 vs. uniprot
Match: H3FVQ9_PRIPA (Phospholipase A(2) n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=H3FVQ9_PRIPA)

HSP 1 Score: 64.7 bits (156), Expect = 1.700e-8
Identity = 44/125 (35.20%), Postives = 64/125 (51.20%), Query Frame = 1
Query:  295 RPMHLAVKNGDKRALRLLLGADA--GPNLADRNGLTPLMATCTVWNGVAVARELLRAGADPCPADRYGATAVHYAAREAHRDLVPVLLSKGPEALNRLDRGGRTPLCVAAESGRAVTVRRLLSLG 663
            +P+HLA   G  +AL  +   DA    + A R+GL PL      W  V   R LL  GA     D  G T +HYA ++    ++ +LLS    +L+ +D  G TPL +A +S R +T+RR +  G
Sbjct:  142 QPIHLASACGFTKALDRICAKDAQVAVSHATRSGLLPLHIAVN-WKAVESVRYLLSKGAALNKGDSNGRTVLHYAVQQEDTRILELLLSSPSLSLSPIDGDGCTPLFIALQSNRPLTIRRCIDKG 265          
BLAST of mRNA_L-elsbetiae_contig11853.1593.1 vs. uniprot
Match: A0A7S2WBW0_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WBW0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.680e-8
Identity = 44/124 (35.48%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  298 PMHLAVKNGDKRALRLLLGADAGPNLADRNGLTPLMATCTVWNGVAVARELLRAGADPCPADRYGATAVHYAAREAHRDLVPVLLSKGPEALNR---LDRGGRTPLCVAAESGRAVTVRRLLSL 660
            P+  A  NG+    +LLL A+A PNL D +G++PL+   T  N   VA+EL+ AG D     +  +TA+H AA     D++  L+   PE+  +   +++ G TP+ +A  +G    VR LL+L
Sbjct:  168 PLVWASFNGNATITKLLLEANADPNLCDVDGVSPLIIAATT-NSAMVAKELVAAGGDILN-QKGCSTALHAAAAAGALDVITTLIEADPESCKKACTIEQDGLTPMGLAGYAGHKEIVRVLLAL 289          
BLAST of mRNA_L-elsbetiae_contig11853.1593.1 vs. uniprot
Match: A0A8J5MA68_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MA68_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.610e-7
Identity = 46/123 (37.40%), Postives = 60/123 (48.78%), Query Frame = 1
Query:  301 MHLAVKNGDKRALRLLLGADAGPNLADRNGLTPLMATCTVWNGVAVARELLR-AGADPCPADRYGATAVHYAAREAHRDLVPVLLSKGPEALNRLDRGGRTPLCVAAESGRAVTVRRLLSLGA 666
            +HLAV+NG K  L LLL      +  D  G TPLM      N   + + + R A  + C  D  G+TA+H+  R  H     +LL  G  A+N +D  G TPL  A  +G A T R L   GA
Sbjct:   98 LHLAVENGIKDMLELLLDQVKRVDAIDDMGFTPLMVASQRGNNAVIEQLIARKANVEACAND--GSTALHFTVRCGHLTTCKILLKGG--AINAVDVDGVTPLMDAISNGCAWTCRFLAMFGA 216          
BLAST of mRNA_L-elsbetiae_contig11853.1593.1 vs. uniprot
Match: A0A1Q7R059_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium 13_1_40CM_2_56_5 TaxID=1803441 RepID=A0A1Q7R059_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-6
Identity = 51/148 (34.46%), Postives = 64/148 (43.24%), Query Frame = 1
Query:  289 GTRPMHLAVKNGDKRALRLLLGADAGPNLADRNGLTPLMATCTVW------------NGVAVARELLRAGADPCPADRYGATAVHYAAREAHRDLVPVLLSKGPEALNRLDRGGRTPLCVAA----------ESGRAVTVRRLLSLGA 666
            G  P  LA    D   +R LL A A P +  ++G T LM    V             N +  A+  L  G D   A+  G TA+H AA      L+P L+ KG   LN  DRGG TPL +AA           + R  T+  LL LGA
Sbjct:  165 GVTPFLLAAAAADVELMRTLLDAGADPKIKAKDGATALMMAAGVGRIDERENEQEEANALEAAKLALMLGNDISAANARGRTALHGAAWTGADRLIPFLVEKGAN-LNAKDRGGYTPLALAAGLAPRGGDSASNVRESTMALLLKLGA 311          
BLAST of mRNA_L-elsbetiae_contig11853.1593.1 vs. uniprot
Match: A0A6H5I1C3_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I1C3_9HYME)

HSP 1 Score: 58.5 bits (140), Expect = 1.850e-6
Identity = 40/114 (35.09%), Postives = 58/114 (50.88%), Query Frame = 1
Query:  289 GTRPMHLAVKNGDKRALRLLLGADAGPNLADRNGLTPLMATC-TVWNGVAVARELLRAGADPC-------PADRYGATAVHYAAREAHRDLVPVLLSKGPEALNRLDRGGRTPL 606
            G  P+H+A+KNG  + + +L+   A PNLAD+NG TPL   C + ++ V + + L  A AD           D+   T +H A    H  +   LL KG + LN  +  G TPL
Sbjct:  101 GKTPLHVAIKNGKIKLVEILMRRGANPNLADKNGFTPLHIVCQSKYDDVDLLKMLFEA-ADKFNKPLQVDARDKSNCTPLHLALNCGHEQIAEWLLRKGAD-LNLANAEGSTPL 212          
BLAST of mRNA_L-elsbetiae_contig11853.1593.1 vs. uniprot
Match: A0A6H5HY23_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HY23_9HYME)

HSP 1 Score: 58.5 bits (140), Expect = 2.070e-6
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = 1
Query:  289 GTRPMHLAVKNGDKRALRLLLGADAGPNLADRNGLTPLMATC-TVWNGVAVARELLRAGAD---PCPAD---RYGATAVHYAAREAHRDLVPVLLSKGPEALNRLDRGGRTPL 606
            G  P+H+A+KNG  + + +L+   A PNLAD+NG TPL   C + ++ V + + L  A      P   D   +   T +H A    H  +   LL KG + LN  +  G TPL
Sbjct:  169 GKTPLHVAIKNGKIKLVEILMRRGANPNLADKNGFTPLHIVCQSKYDDVDLLKMLFEAAEKFNKPLQVDARDKSNCTPLHLALNCGHEQIAEWLLRKGAD-LNLANAEGSTPL 280          
BLAST of mRNA_L-elsbetiae_contig11853.1593.1 vs. uniprot
Match: A0A2R5GR82_9STRA (Ankyrin repeat domain-containing protein 50 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GR82_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.120e-6
Identity = 41/114 (35.96%), Postives = 56/114 (49.12%), Query Frame = 1
Query:  301 MHLAVKNGDKRALRLLLGADAGPNLADRNGLTPLMATCTVWNGVAVARELLRAGADPCPADRY-GATAVHYAAREAHRDLVPVLLSKGP-----EALNRLDRGGRTPLCVAAES 624
            +H A + G  R  RLLL A A PNLADR G TP++    + N +     LL AG D    +R  G   +HYAA     ++V +L+ +G        L    R  RT L +A E+
Sbjct:  343 LHFAARIGHDRVTRLLLTAGANPNLADRQGRTPVLEAI-ICNNIGTVETLLHAGGDAGLVERSAGWNGLHYAALNGRENIVELLMRRGKLSPHTRTLPGPWRAPRTALDIAREA 455          
BLAST of mRNA_L-elsbetiae_contig11853.1593.1 vs. uniprot
Match: A0A6H5IQT0_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IQT0_9HYME)

HSP 1 Score: 58.5 bits (140), Expect = 2.340e-6
Identity = 40/114 (35.09%), Postives = 58/114 (50.88%), Query Frame = 1
Query:  289 GTRPMHLAVKNGDKRALRLLLGADAGPNLADRNGLTPLMATC-TVWNGVAVARELLRAGADPC-------PADRYGATAVHYAAREAHRDLVPVLLSKGPEALNRLDRGGRTPL 606
            G  P+H+A+KNG  + + +L+   A PNLAD+NG TPL   C + ++ V + + L  A AD           D+   T +H A    H  +   LL KG + LN  +  G TPL
Sbjct:  498 GKTPLHVAIKNGKIKLVEILMRRGANPNLADKNGFTPLHIVCQSKYDDVDLLKMLFEA-ADKFNKPLQVDARDKSNCTPLHLALNCGHEQIAEWLLRKGAD-LNLANAEGSTPL 609          
BLAST of mRNA_L-elsbetiae_contig11853.1593.1 vs. uniprot
Match: A0A6H5IRB6_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IRB6_9HYME)

HSP 1 Score: 58.2 bits (139), Expect = 2.620e-6
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:  298 PMHLAVKNGDKRALRLLLGADAGPNLADRNGLTPLMATCTVWNGVAVARELLRAG----------ADPCPADRYGATAVHYAAREAHRDLVPVLLSKGPE 567
            P++LA+K G K  + LLL   AGPN+AD+NGLTPL   C   +      +LL+             +    D+ G T +H A  + H+DL+ VLL +G +
Sbjct:  230 PLNLALKMGHKGTVELLLRRGAGPNIADKNGLTPLHTICQRDDDDXENDDLLKLFLEINDELNQLVEVDAKDKKGNTPLHLALAKRHKDLIEVLLRRGAD 329          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11853.1593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK53_9PHAE1.770e-1440.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H3FVQ9_PRIPA1.700e-835.20Phospholipase A(2) n=2 Tax=Pristionchus pacificus ... [more]
A0A7S2WBW0_9STRA2.680e-835.48Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A8J5MA68_9STRA1.610e-737.40Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A1Q7R059_9BACT1.010e-634.46Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A6H5I1C3_9HYME1.850e-635.09Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5HY23_9HYME2.070e-634.51Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A2R5GR82_9STRA2.120e-635.96Ankyrin repeat domain-containing protein 50 n=1 Ta... [more]
A0A6H5IQT0_9HYME2.340e-635.09Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5IRB6_9HYME2.620e-636.00Uncharacterized protein n=1 Tax=Trichogramma brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11853contigL-elsbetiae_contig11853:1066..1731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue5.8e-22
Seed eggNOG ortholog2880.D7FVG9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size666
Cds size666
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815387.3204331-CDS-L-elsbetiae_contig11853:1065..17311622815387.3204331-CDS-L-elsbetiae_contig11853:1065..1731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11853 1066..1731 -
1691682873.357204-CDS-L-elsbetiae_contig11853:1065..17311691682873.357204-CDS-L-elsbetiae_contig11853:1065..1731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11853 1066..1731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11853.1593.1prot_L-elsbetiae_contig11853.1593.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11853 1066..1731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11853.1593.1

>prot_L-elsbetiae_contig11853.1593.1 ID=prot_L-elsbetiae_contig11853.1593.1|Name=mRNA_L-elsbetiae_contig11853.1593.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
LLEAVRTGNIRGVAALLMAGASVDGSPLAGGARPLLLAAASGDARMMHAL
IGRGADVNAGAFRNSGSGGGGVDGGGGGKRGRGRGKAAAAACPLVEGTRP
MHLAVKNGDKRALRLLLGADAGPNLADRNGLTPLMATCTVWNGVAVAREL
LRAGADPCPADRYGATAVHYAAREAHRDLVPVLLSKGPEALNRLDRGGRT
PLCVAAESGRAVTVRRLLSLGA
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mRNA from alignment at L-elsbetiae_contig11853:1066..1731-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11853.1593.1 ID=mRNA_L-elsbetiae_contig11853.1593.1|Name=mRNA_L-elsbetiae_contig11853.1593.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig11853:1066..1731- (Laminarionema elsbetiae ELsaHSoW15)
CTGCTCGAGGCCGTACGGACCGGGAACATACGGGGTGTCGCGGCTCTGCT AATGGCGGGGGCGAGCGTGGACGGGTCACCCCTTGCGGGCGGCGCGAGGC CCCTCCTGCTGGCCGCGGCGTCCGGGGATGCTCGCATGATGCACGCGCTG ATCGGGAGAGGCGCGGACGTCAACGCCGGCGCGTTCCGCAACAGCGGCAG TGGTGGCGGCGGCGTCGACGGCGGCGGCGGCGGCAAGCGCGGGAGAGGGA GAGGGAAGGCGGCGGCGGCGGCGTGCCCCCTGGTCGAGGGGACGCGGCCC ATGCACCTCGCGGTCAAGAACGGCGACAAGCGCGCGCTGCGCCTGCTCCT CGGCGCGGACGCCGGGCCCAACCTCGCCGACAGGAACGGCCTCACCCCGC TGATGGCGACCTGCACGGTCTGGAACGGCGTCGCGGTGGCACGGGAGCTG CTGAGGGCGGGTGCGGACCCGTGCCCGGCGGACAGGTACGGCGCCACCGC CGTCCACTACGCGGCGCGAGAGGCCCACAGGGACCTCGTTCCGGTGCTCC TGTCGAAGGGGCCCGAGGCGCTGAACCGGCTCGACCGCGGCGGCAGGACG CCGCTGTGCGTCGCGGCGGAGAGCGGCAGGGCCGTCACCGTGCGCCGCCT GCTGTCGCTCGGGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11853:1066..1731-

>mRNA_L-elsbetiae_contig11853.1593.1 ID=mRNA_L-elsbetiae_contig11853.1593.1|Name=mRNA_L-elsbetiae_contig11853.1593.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig11853:1066..1731- (Laminarionema elsbetiae ELsaHSoW15)
CTGCTCGAGGCCGTACGGACCGGGAACATACGGGGTGTCGCGGCTCTGCT
AATGGCGGGGGCGAGCGTGGACGGGTCACCCCTTGCGGGCGGCGCGAGGC
CCCTCCTGCTGGCCGCGGCGTCCGGGGATGCTCGCATGATGCACGCGCTG
ATCGGGAGAGGCGCGGACGTCAACGCCGGCGCGTTCCGCAACAGCGGCAG
TGGTGGCGGCGGCGTCGACGGCGGCGGCGGCGGCAAGCGCGGGAGAGGGA
GAGGGAAGGCGGCGGCGGCGGCGTGCCCCCTGGTCGAGGGGACGCGGCCC
ATGCACCTCGCGGTCAAGAACGGCGACAAGCGCGCGCTGCGCCTGCTCCT
CGGCGCGGACGCCGGGCCCAACCTCGCCGACAGGAACGGCCTCACCCCGC
TGATGGCGACCTGCACGGTCTGGAACGGCGTCGCGGTGGCACGGGAGCTG
CTGAGGGCGGGTGCGGACCCGTGCCCGGCGGACAGGTACGGCGCCACCGC
CGTCCACTACGCGGCGCGAGAGGCCCACAGGGACCTCGTTCCGGTGCTCC
TGTCGAAGGGGCCCGAGGCGCTGAACCGGCTCGACCGCGGCGGCAGGACG
CCGCTGTGCGTCGCGGCGGAGAGCGGCAGGGCCGTCACCGTGCGCCGCCT
GCTGTCGCTCGGGGCGCTGCTCGAGGCCGTACGGACCGGGAACATACGGG
GTGTCGCGGCTCTGCTAATGGCGGGGGCGAGCGTGGACGGGTCACCCCTT
GCGGGCGGCGCGAGGCCCCTCCTGCTGGCCGCGGCGTCCGGGGATGCTCG
CATGATGCACGCGCTGATCGGGAGAGGCGCGGACGTCAACGCCGGCGCGT
TCCGCAACAGCGGCAGTGGTGGCGGCGGCGTCGACGGCGGCGGCGGCGGC
AAGCGCGGGAGAGGGAGAGGGAAGGCGGCGGCGGCGGCGTGCCCCCTGGT
CGAGGGGACGCGGCCCATGCACCTCGCGGTCAAGAACGGCGACAAGCGCG
CGCTGCGCCTGCTCCTCGGCGCGGACGCCGGGCCCAACCTCGCCGACAGG
AACGGCCTCACCCCGCTGATGGCGACCTGCACGGTCTGGAACGGCGTCGC
GGTGGCACGGGAGCTGCTGAGGGCGGGTGCGGACCCGTGCCCGGCGGACA
GGTACGGCGCCACCGCCGTCCACTACGCGGCGCGAGAGGCCCACAGGGAC
CTCGTTCCGGTGCTCCTGTCGAAGGGGCCCGAGGCGCTGAACCGGCTCGA
CCGCGGCGGCAGGACGCCGCTGTGCGTCGCGGCGGAGAGCGGCAGGGCCG
TCACCGTGCGCCGCCTGCTGTCGCTCGGGGCG
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