mRNA_L-elsbetiae_contig11844.1589.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11844.1589.1
Unique NamemRNA_L-elsbetiae_contig11844.1589.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11844.1589.1 vs. uniprot
Match: A0A6H5JAK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK7_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.630e-41
Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = 2 
Query:   20 LEGERRSNGLVWSFVGGSFAGLCQAAVIIPTDTIKIKLQIQVGAPGSKALQYHGPVDCAVKLVKAQGIGALFRGASVTAIRDTPSLGLYFASYEGFKERL 319
            +E  RR+  L+WSFVGGSFAGLCQA +IIPTD IKIKLQIQVGAPGS  L+Y GPVDCA+ +   QG+  LFRG+  TAIRDTP++GLYFASYE  K+RL
Sbjct:  137 VEERRRNAELLWSFVGGSFAGLCQAVIIIPTDIIKIKLQIQVGAPGSSNLKYRGPVDCAMSIFNTQGVRGLFRGSPATAIRDTPAMGLYFASYEAVKDRL 236
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BLAST of mRNA_L-elsbetiae_contig11844.1589.1 vs. uniprot
Match: A0A835Z6G9_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.480e-21
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 2 
Query:   56 SFVGGSFAGLCQAAVIIPTDTIKIKLQIQVGAPGSKALQYHGPVDCAVKLVKAQGIGALFRGASVTAIRDTPSLGLYFASYEGFKERL 319
            +F  GS AG CQ  V++P+D IK KLQ+QVG+  S  L+Y GP+DCA +LV+ QG  AL  G + T  R+ P+LG YF+ YE  + RL
Sbjct:  105 TFAAGSCAGACQTVVLLPSDNIKTKLQVQVGSLHSSQLRYKGPLDCARQLVRTQGPRALLAGGTATVCRELPALGTYFSVYEHSRARL 192
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BLAST of mRNA_L-elsbetiae_contig11844.1589.1 vs. uniprot
Match: A0A6U2B399_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2B399_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.450e-20
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 2 
Query:   38 SNGLVWSFVGGSFAGLCQAAVIIPTDTIKIKLQIQVGAPGSKALQYHGPVDCAVKLVKAQGIGALFRGASVTAIRDTPSLGLYFASYEGFKERL 319
            +N L  S V GSFAGL Q  VI P + +K +LQ+Q    G + L Y GP+D   K+V   G+  LFRG  VTA+R+ P+ GLYFA+Y+  K+R+
Sbjct:   49 NNNLTKSLVCGSFAGLVQCLVICPMEHVKCRLQVQHSGGGRQKL-YRGPLDAVDKIVSGHGVSGLFRGWWVTALREVPAFGLYFATYDDIKDRI 141
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BLAST of mRNA_L-elsbetiae_contig11844.1589.1 vs. uniprot
Match: A0A835ZAK8_9STRA (Solute carrier family 25 member 45-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-19
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 2 
Query:   59 FVGGSFAGLCQAAVIIPTDTIKIKLQIQVGAPGSKALQYHGPVDCAVKLVKAQGIGALFRGASVTAIRDTPSLGLYFASYEGFKERL 319
            FV G+FAG CQ  V++PT+ IK KLQ+   A  +  LQY G +DCA +LV+ QG+ +L  G + T  R+ P+ G+YF+ YE  K  L
Sbjct:   98 FVAGAFAGACQTVVVLPTENIKTKLQVNTYARSTLKLQYKGAIDCATQLVRTQGLRSLLAGGTATVWREVPAYGIYFSVYEQVKALL 184
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BLAST of mRNA_L-elsbetiae_contig11844.1589.1 vs. uniprot
Match: UPI000F557CEF (mitochondrial carnitine/acylcarnitine carrier protein-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F557CEF)

HSP 1 Score: 86.7 bits (213), Expect = 1.600e-18
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2 
Query:   35 RSNGLVWSFVGGSFAGLCQAAVIIPTDTIKIKLQIQVGAPGSKALQYHGPVDCAVKLVKAQGIGALFRGASVTAIRDTPSLGLYFASYEGFKERLMM 325
            +SN    +F  G F G C AA++ P D IK  LQIQ  + G +  +Y GP++CA +L K +GI +L+RG   T +RD PS+G+YF SYE    +L +
Sbjct:   87 QSNRNFQNFTSGMFGGFCAAAIVTPGDRIKCLLQIQQSSGGER--KYKGPLNCAKQLYKEKGIRSLYRGTFATLLRDVPSIGVYFCSYEWILSKLTL 181
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BLAST of mRNA_L-elsbetiae_contig11844.1589.1 vs. uniprot
Match: UPI000C04306D (mitochondrial carnitine/acylcarnitine carrier protein-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C04306D)

HSP 1 Score: 86.3 bits (212), Expect = 6.400e-18
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2 
Query:   56 SFVGGSFAGLCQAAVIIPTDTIKIKLQIQVGAPGSKALQYHGPVDCAVKLVKAQGIGALFRGASVTAIRDTPSLGLYFASYEGFKERLMM 325
            +F  G F G C AA++ P D IK  LQIQ  + G +  +Y GP++CA +L K +GI +L+RG   T +RD PS+G+YF SYE    +L +
Sbjct:  127 NFTSGMFGGFCAAAIVTPADRIKCLLQIQQSSGGER--KYKGPLNCAKQLYKEKGIRSLYRGTFATLLRDVPSIGVYFCSYEWILNKLTL 214
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BLAST of mRNA_L-elsbetiae_contig11844.1589.1 vs. uniprot
Match: UPI000F55337B (mitochondrial carnitine/acylcarnitine carrier protein-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F55337B)

HSP 1 Score: 80.9 bits (198), Expect = 8.450e-17
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:   74 FAGLCQAAVIIPTDTIKIKLQIQVGAPGSKALQYHGPVDCAVKLVKAQGIGALFRGASVTAIRDTPSLGLYFASYEGFKERLMM 325
            F G C AA++ P D IK  LQIQ  + G +  +Y GP++CA +L K +GI +L+RG   T +RD PS+G+YF SYE    +L +
Sbjct:    2 FGGFCAAAIVTPGDRIKCLLQIQQSSGGER--KYKGPLNCAKQLYKEKGIRSLYRGTFATLLRDVPSIGVYFCSYEWILSKLTL 83
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BLAST of mRNA_L-elsbetiae_contig11844.1589.1 vs. uniprot
Match: UPI001CC585CB (solute carrier family 25 member 45 isoform X5 n=5 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC585CB)

HSP 1 Score: 82.4 bits (202), Expect = 1.670e-16
Identity = 42/90 (46.67%), Postives = 54/90 (60.00%), Query Frame = 2 
Query:   59 FVGGSFAGLCQAAVIIPTDTIKIKLQIQV---GAPGSKALQYHGPVDCAVKLVKAQGIGALFRGASVTAIRDTPSLGLYFASYEGFKERL 319
            FV GS AG  QA  + P D IK++LQ Q      PG  + QY GP+ CA  +++ +G   LFRGA    +RDTP+LGLYF +YEG    L
Sbjct:  126 FVSGSIAGFVQAYCLAPFDLIKVRLQNQTEPRAGPGVASPQYRGPLHCARTILREEGPRGLFRGAWALVLRDTPTLGLYFLTYEGLSRWL 215
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BLAST of mRNA_L-elsbetiae_contig11844.1589.1 vs. uniprot
Match: UPI001E669938 (mitochondrial carnitine/acylcarnitine carrier protein-like isoform X3 n=1 Tax=Salmo salar TaxID=8030 RepID=UPI001E669938)

HSP 1 Score: 81.6 bits (200), Expect = 2.240e-16
Identity = 36/88 (40.91%), Postives = 58/88 (65.91%), Query Frame = 2 
Query:   59 FVGGSFAGLCQAAVIIPTDTIKIKLQIQVGAP-GSKALQYHGPVDCAVKLVKAQGIGALFRGASVTAIRDTPSLGLYFASYEGFKERL 319
            F+ G  AG+    ++ P + +K  LQ+Q  A  G +A++Y GP+DCA+KL K QGI ++++G ++T IRD PS G YF +Y+  K ++
Sbjct:  122 FLSGCLAGVFTTVIVCPGERVKCLLQVQAQASEGQRAVRYAGPLDCALKLYKTQGIRSIYKGTTLTLIRDVPSNGAYFMAYDFLKHKM 209
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BLAST of mRNA_L-elsbetiae_contig11844.1589.1 vs. uniprot
Match: G3VLS7_SARHA (Solute carrier family 25 member 45 n=3 Tax=Sarcophilus harrisii TaxID=9305 RepID=G3VLS7_SARHA)

HSP 1 Score: 81.6 bits (200), Expect = 2.480e-16
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 2 
Query:   29 ERRSNGLVWS--FVGGSFAGLCQAAVIIPTDTIKIKLQIQVGA---PGSKALQYHGPVDCAVKLVKAQGIGALFRGASVTAIRDTPSLGLYFASYEGFKERL 319
            ER++  L +   FV GS AG  QA  + P D IK++LQ Q      PG    QY GP+ CA  +++ +G   LFRGA    +RDTP+LGLYF +YEG    L
Sbjct:   91 ERKAQPLNYGYVFVAGSIAGFVQAYCLAPFDLIKVRLQNQTEPRTRPGVAPPQYRGPLHCARSIIQEEGPRGLFRGAWALVLRDTPTLGLYFLTYEGLSRWL 192
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11844.1589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAK7_9PHAE4.630e-4169.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6G9_9STRA6.480e-2150.00Mitochondrial carrier domain-containing protein n=... [more]
A0A6U2B399_9STRA6.450e-2046.81Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A835ZAK8_9STRA2.600e-1945.98Solute carrier family 25 member 45-like protein (F... [more]
UPI000F557CEF1.600e-1843.30mitochondrial carnitine/acylcarnitine carrier prot... [more]
UPI000C04306D6.400e-1844.44mitochondrial carnitine/acylcarnitine carrier prot... [more]
UPI000F55337B8.450e-1745.24mitochondrial carnitine/acylcarnitine carrier prot... [more]
UPI001CC585CB1.670e-1646.67solute carrier family 25 member 45 isoform X5 n=5 ... [more]
UPI001E6699382.240e-1640.91mitochondrial carnitine/acylcarnitine carrier prot... [more]
G3VLS7_SARHA2.480e-1644.12Solute carrier family 25 member 45 n=3 Tax=Sarcoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11844contigL-elsbetiae_contig11844:2743..5356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size332
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815386.7854722-CDS-L-elsbetiae_contig11844:2742..28781622815386.7854722-CDS-L-elsbetiae_contig11844:2742..2878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11844 2743..2878 +
1691682873.0246449-CDS-L-elsbetiae_contig11844:2742..28781691682873.0246449-CDS-L-elsbetiae_contig11844:2742..2878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11844 2743..2878 +
1622815386.8010354-CDS-L-elsbetiae_contig11844:5161..53551622815386.8010354-CDS-L-elsbetiae_contig11844:5161..5355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11844 5162..5355 +
1691682873.0390959-CDS-L-elsbetiae_contig11844:5161..53551691682873.0390959-CDS-L-elsbetiae_contig11844:5161..5355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11844 5162..5355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11844.1589.1prot_L-elsbetiae_contig11844.1589.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11844 2743..5355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11844.1589.1

>prot_L-elsbetiae_contig11844.1589.1 ID=prot_L-elsbetiae_contig11844.1589.1|Name=mRNA_L-elsbetiae_contig11844.1589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
DGAGERARGRKEKQRAGLELRRRIFRGAVPGGRHHPHRYDQDQAPDPSRG
PGFEGPAVPRPRGLRGEARQGPRHRRPLPGRLRHRHPRYPVPGTLLRVLR
GLQGAADDGP
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mRNA from alignment at L-elsbetiae_contig11844:2743..5356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11844.1589.1 ID=mRNA_L-elsbetiae_contig11844.1589.1|Name=mRNA_L-elsbetiae_contig11844.1589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2614bp|location=Sequence derived from alignment at L-elsbetiae_contig11844:2743..5356+ (Laminarionema elsbetiae ELsaHSoW15)
GACGGAGCGGGAGAAAGAGCTCGAGGGCGAAAGGAGAAGCAACGGGCTGG
TTTGGAGCTTCGTAGGCGGATCTTTCGCGGGGCTGTGCCAGGCGGCCGTC
ATCATCCCCACAGATACGATCAAGATCAAGCTCCAGGTGTGTGTGTGTGT
GTGTGTGTGATTCACGGTACCCTGTGTATGTGTGTGTGTGGTGTGTGCGT
GTGTGTGTTTTTTGGTGTGCGCCTGGCCTTGTGTGCGACCGGTAGCATGG
AGGGCATGCTGCAGGTGATTATTGTTGGGCGCCGTCTGCGCGTGATCATC
GCGAAGCGAAGCGAAGCCTTCAAGAAGAGCACCAAGGCACTCTCTCTCGA
TCGAACAAGTGGCGGAGGGATGTAGAGCGTCGCTTGTTGCATGGCCTTCT
TAGACTCGAACAACCCCGGCAACGGCACAATCGGAACGGGCCGAGTGCGA
ACGTCTCATCAGCCGGCGGATCGAGATTGATGACGCAGCCGTCGTACGCA
GAACGCAAAAATGCTGCGAAGGGCGACGTGAGTTGAGCATTGCCGGGAAG
TGTCCATGCATGCGAACTACAGCCGCACCGCCGGGCAGCACACTCATTTA
TTTTTAAGGAGTCATTGTTTTTAATTGTTTTTTTCTTGTTTTCTTTTTGT
TTGTTTTCTTCCTTTATACATACATAGCTCGCTTTGCTGGTGCCAGAAGC
ACCCACATACATTTTCTAATCGCTTGTTTAGCGTCGAGACCACCCCTGCC
CTTGGGATGGACAGTCATACGGGTGTGATCAACTCACGTACGATCCGTGG
TATATACGTATGTACGTATGGTACACAGCAGTCGGACGAGACGTCCAGAG
GATATGGCGCCGAAGTATTTATACACAAGTTATTGTTCTCCCCGTCCCTA
CAATATACGCACACGACGACGCCAAGCGCCCGAATGTACTTCGTATGTGG
CAATAAAAAATATGCGGATTGCCCTTCATGAGACTCGCCGCCCGTTTGGC
GGCGCTTTTTCGGGCGGCGCTTCGCGCGTCTGCTGTGACTAGATACGCCC
TTGGTGCCTGCCTGCCCGGCCCAGCGAAAATTCCTGGAAAATTCGCCTAG
TAGCATCCACGTATGTTGTACTTACTCTCGGGCTTGAAGGGGGCGCAAGG
TCAATTGTGTCGTGCTGTTCGCTGCTGCTGCCACTGCCGCTGCTGCTGCT
GCTGCTGCTGTTGTTGTTGGTGTCGGGGCTAGTATAGCAGAGTGAAACCA
TATGATGTGTCCAAAGGGATACGTGTGACCTTGGCGCGCTGCTGGAAAGA
TATATATGCTTCAGTAACTATTGTGAACGGCAGCTTTTTTTATCGTTAAA
TACGTTGGTTGTCACTGTTTTTGTTGCTGTAACGGCGTCGTATCACATCA
TCACACGGCACCTTCTCTCGCCGGCTGAGACTTCAAATAGCGCCGGTGTG
TTGGTGGGGCAATTTGATACCGGGGTATCAACGGCGGCGCTTCTTACCTA
AAGGGATAATGCGATCGACCAACTGGTCGAATAGCTCAGGCAAGCAACAA
GATACACCGCCTACACTCCTTCGTTGACGACTTAAGTAAAGCGCAGCTTT
GTTTTAAGCAAGAAAGGAGCGAGAATGGTGCTTGCGCAGTACACAGTTAG
GCCCTCCGGGCTTGCGGTTGCAATCTTGAAACACTATACTGAGCTGATTA
ATTCTCGTGCTCTGGGCCGTTGGTAACGTCCAGCCCGTAGCTTGTTGTCT
CGCTGGGGCGTGATTTTCTGTCGGGCAGGCCCTTCTTGCGCTAAAGATCC
ACGCGTAGGCGTTTTCGCGATTGCCCCCACCCACCCCGCCCCTTTTTCTC
TGATCTAAGTCTGGCGACGATGCCAGTACCGTATGTGACACAAGGTACCA
CACCCCCTGGATGGATTTTCGAAGCCCGATTCCTCCCCAGCAAGAATAGT
GCTAGTGCCGAAAGGGGTGGCGTTGGAAAGATCTAGGCGAAGCTGTCCGA
AAATGTCCTGATTGGTACTAGCACCCTCTTCGTTACGGAGTAATGGAGCT
CTAAACTTCGATCCAGGGGATGTGGTATCTCGTGTCACCTACGGTATGCA
CCCGGTCACAAAACACACACACACACAAACACACACACACGCACGCACAC
ACAAAGGCGACGACAGGTTGTCTTGTTTGCCTCAAGGTTGACCGGAAAAG
ACATCTGCCGCTCGTCAGTAAAATATATAAACAAAACGAAACCAAAGTTA
GCTGCACCGGTCCGTACGTTGGACCAACCGAACCTGGCTCTGCCGCGCCA
ACGCCGAACAACCGACGCGGCATTCGGCATCGGCGTGTCCACCACCCATT
CATGCCACGCGCACGCTCTTTACTATTACAACCCTCTCCCTTCCCTCCCC
TCCTTCTCATTAATTTCAGATCCAAGTCGGGGCCCCGGGTTCGAAGGCCC
TGCAGTACCACGGCCCCGTGGACTGCGCGGTGAAGCTCGTCAAGGCCCAA
GGCATCGGCGCCCTCTTCCGGGGCGCCTCCGTCACCGCCATCCGAGATAC
CCCGTCCCTGGGACTCTACTTCGCGTCCTACGAGGGCTTCAAGGAGCGGC
TGATGATGGCCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11844:2743..5356+

>mRNA_L-elsbetiae_contig11844.1589.1 ID=mRNA_L-elsbetiae_contig11844.1589.1|Name=mRNA_L-elsbetiae_contig11844.1589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig11844:2743..5356+ (Laminarionema elsbetiae ELsaHSoW15)
GACGGAGCGGGAGAAAGAGCTCGAGGGCGAAAGGAGAAGCAACGGGCTGG
TTTGGAGCTTCGTAGGCGGATCTTTCGCGGGGCTGTGCCAGGCGGCCGTC
ATCATCCCCACAGATACGATCAAGATCAAGCTCCAGGACGGAGCGGGAGA
AAGAGCTCGAGGGCGAAAGGAGAAGCAACGGGCTGGTTTGGAGCTTCGTA
GGCGGATCTTTCGCGGGGCTGTGCCAGGCGGCCGTCATCATCCCCACAGA
TACGATCAAGATCAAGCTCCAGATCCAAGTCGGGGCCCCGGGTTCGAAGG
CCCTGCAGTACCACGGCCCCGTGGACTGCGCGGTGAAGCTCGTCAAGGCC
CAAGGCATCGGCGCCCTCTTCCGGGGCGCCTCCGTCACCGCCATCCGAGA
TACCCCGTCCCTGGGACTCTACTTCGCGTCCTACGAGGGCTTCAAGGAGC
GGCTGATGATGGCCCGATCCAAGTCGGGGCCCCGGGTTCGAAGGCCCTGC
AGTACCACGGCCCCGTGGACTGCGCGGTGAAGCTCGTCAAGGCCCAAGGC
ATCGGCGCCCTCTTCCGGGGCGCCTCCGTCACCGCCATCCGAGATACCCC
GTCCCTGGGACTCTACTTCGCGTCCTACGAGGGCTTCAAGGAGCGGCTGA
TGATGGCCCG
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