mRNA_L-elsbetiae_contig1184.1586.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1184.1586.1
Unique NamemRNA_L-elsbetiae_contig1184.1586.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1184.1586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1184contigL-elsbetiae_contig1184:11463..12064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKinesin motor domain
Ec32 orthologEc-20_003300.1
Exons2
Model size320
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815386.6151302-CDS-L-elsbetiae_contig1184:11462..115671622815386.6151302-CDS-L-elsbetiae_contig1184:11462..11567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1184 11463..11567 +
1691682872.9604018-CDS-L-elsbetiae_contig1184:11462..115671691682872.9604018-CDS-L-elsbetiae_contig1184:11462..11567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1184 11463..11567 +
1622815386.6278744-CDS-L-elsbetiae_contig1184:11850..120631622815386.6278744-CDS-L-elsbetiae_contig1184:11850..12063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1184 11851..12063 +
1691682872.9703758-CDS-L-elsbetiae_contig1184:11850..120631691682872.9703758-CDS-L-elsbetiae_contig1184:11850..12063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1184 11851..12063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1184.1586.1prot_L-elsbetiae_contig1184.1586.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1184 11463..12063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1184.1586.1

>prot_L-elsbetiae_contig1184.1586.1 ID=prot_L-elsbetiae_contig1184.1586.1|Name=mRNA_L-elsbetiae_contig1184.1586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
PASQWQFRCSSGGEVETEVDKKEEENEERHEGLPQINRIGGWFTWATTAA
SRGGRGEGCGDDGGGGGDSEDRDFSSVSPRWVELDFGEVVMVKGLDLCPL
TKRPPT
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mRNA from alignment at L-elsbetiae_contig1184:11463..12064+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1184.1586.1 ID=mRNA_L-elsbetiae_contig1184.1586.1|Name=mRNA_L-elsbetiae_contig1184.1586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=602bp|location=Sequence derived from alignment at L-elsbetiae_contig1184:11463..12064+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCGTCTCAGTGGCAGTTTCGGTGCTCATCGGGGGGGGAGGTAGAGAC
CGAGGTCGACAAAAAGGAGGAGGAGAACGAGGAGAGGCACGAGGGTCTTC
CACAGGTAAAAGATTTTGCCACGAAAGACATCCTTCGTGAATTTCGTTCG
GGCTGGTGTACGGGTGCTGCCGTGGTCACTCGACCATGCGGAGTATTTTA
AGGGCGATTTACAGGCATGGAGGGCGTGCACGGAATCCGGAAAGACTTAG
GGTTAGCAAGCGCTCACTTTCCCCCCTCACTGCCTGTAGCACTCTCATGA
GATATCCCTCCCCCCAGGTCCACTGTTGTCACGAAGGTAATACAGCTGTC
GAAATTTCGTTCGCGTCGTCTTGTACGCGAATACATAGATCAACCGTATC
GGAGGCTGGTTCACGTGGGCGACCACCGCAGCAAGCCGCGGAGGACGAGG
GGAAGGGTGTGGCGATGATGGTGGCGGCGGAGGTGACAGCGAAGATCGCG
ATTTTTCGTCGGTCTCGCCCCGCTGGGTAGAACTCGACTTTGGAGAGGTG
GTAATGGTGAAGGGACTGGACCTCTGCCCGCTGACAAAGCGCCCGCCAAC
TG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1184:11463..12064+

>mRNA_L-elsbetiae_contig1184.1586.1 ID=mRNA_L-elsbetiae_contig1184.1586.1|Name=mRNA_L-elsbetiae_contig1184.1586.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig1184:11463..12064+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCGTCTCAGTGGCAGTTTCGGTGCTCATCGGGGGGGGAGGTAGAGAC
CGAGGTCGACAAAAAGGAGGAGGAGAACGAGGAGAGGCACGAGGGTCTTC
CACAGCCGGCGTCTCAGTGGCAGTTTCGGTGCTCATCGGGGGGGGAGGTA
GAGACCGAGGTCGACAAAAAGGAGGAGGAGAACGAGGAGAGGCACGAGGG
TCTTCCACAGATCAACCGTATCGGAGGCTGGTTCACGTGGGCGACCACCG
CAGCAAGCCGCGGAGGACGAGGGGAAGGGTGTGGCGATGATGGTGGCGGC
GGAGGTGACAGCGAAGATCGCGATTTTTCGTCGGTCTCGCCCCGCTGGGT
AGAACTCGACTTTGGAGAGGTGGTAATGGTGAAGGGACTGGACCTCTGCC
CGCTGACAAAGCGCCCGCCAACTATCAACCGTATCGGAGGCTGGTTCACG
TGGGCGACCACCGCAGCAAGCCGCGGAGGACGAGGGGAAGGGTGTGGCGA
TGATGGTGGCGGCGGAGGTGACAGCGAAGATCGCGATTTTTCGTCGGTCT
CGCCCCGCTGGGTAGAACTCGACTTTGGAGAGGTGGTAATGGTGAAGGGA
CTGGACCTCTGCCCGCTGACAAAGCGCCCGCCAACT
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