mRNA_L-elsbetiae_contig11837.1584.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11837.1584.1
Unique NamemRNA_L-elsbetiae_contig11837.1584.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11837.1584.1 vs. uniprot
Match: A0A6H5K6R5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6R5_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 9.470e-36
Identity = 77/109 (70.64%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:  265 LGPGPMPSQAPNGGVKYVSEPPDNLALLSTVAVPGGYIAPQRRASYEERGS-------RHRRPGPAGGGGDADRDG-DDLPPPANPGLTTGMSFDPNRDDGTLPFTLGS 567
            L PGPMP+ APN GVKY+SEP DNLALLSTVA PG Y  P RRASYE+R         R R      GGG ADRDG DDLPPPANPGLTTGMSFDPNRDDGT  FTLGS
Sbjct:   33 LHPGPMPTAAPNVGVKYMSEPCDNLALLSTVAAPGAYNNPPRRASYEDRSGVERQAAVRQRIAAQPSGGGAADRDGGDDLPPPANPGLTTGMSFDPNRDDGTFQFTLGS 141
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BLAST of mRNA_L-elsbetiae_contig11837.1584.1 vs. uniprot
Match: D8LQH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH3_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.030e-30
Identity = 91/178 (51.12%), Postives = 97/178 (54.49%), Query Frame = 1 
Query:   85 SAAAVPSDWVDRVRKMPTVAP-PRPSSPNVVHRMAGAA-------RTPSPPEGXXXXXXXXXXXXXXXLGPGPMPSQAPNGGVKYVSEPPDNLALLSTVAVPGGYIAPQRRASYEERGSRHRRPGPAGGGGDADRDGDD--------LPPPANPGLTTGMSFDPNRDDGTLPFTLGSS 570
            +AAA PSDWVDRVRKMPT+A  PR SSPNVVHRM G         R+PSP +                L PGPMPS AP+ GVKY+SEP DNLALLSTVA PGGY  P                                       LPPPANPGL TGMSFDPNRDDGT  FTLG S
Sbjct:  587 NAAAAPSDWVDRVRKMPTIASSPRASSPNVVHRMGGNGGGNGGDVRSPSPRQ---EDNNCTSPRSMGMLHPGPMPSAAPSVGVKYMSEPRDNLALLSTVAAPGGYNNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPPPANPGLATGMSFDPNRDDGTFQFTLGPS 761
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11837.1584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6R5_9PHAE9.470e-3670.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQH3_ECTSI3.030e-3051.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11837contigL-elsbetiae_contig11837:543..2485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1943
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11837.1584.1prot_L-elsbetiae_contig11837.1584.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11837 672..1115 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815386.3916905-UTR-L-elsbetiae_contig11837:542..6711622815386.3916905-UTR-L-elsbetiae_contig11837:542..671Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11837 543..671 +
1691682872.848451-UTR-L-elsbetiae_contig11837:542..6711691682872.848451-UTR-L-elsbetiae_contig11837:542..671Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11837 543..671 +
1622815386.4160779-UTR-L-elsbetiae_contig11837:1115..24851622815386.4160779-UTR-L-elsbetiae_contig11837:1115..2485Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11837 1116..2485 +
1691682872.8696115-UTR-L-elsbetiae_contig11837:1115..24851691682872.8696115-UTR-L-elsbetiae_contig11837:1115..2485Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11837 1116..2485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815386.4030347-CDS-L-elsbetiae_contig11837:671..11151622815386.4030347-CDS-L-elsbetiae_contig11837:671..1115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11837 672..1115 +
1691682872.8599415-CDS-L-elsbetiae_contig11837:671..11151691682872.8599415-CDS-L-elsbetiae_contig11837:671..1115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11837 672..1115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11837.1584.1

>prot_L-elsbetiae_contig11837.1584.1 ID=prot_L-elsbetiae_contig11837.1584.1|Name=mRNA_L-elsbetiae_contig11837.1584.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MPTVAPPRPSSPNVVHRMAGAARTPSPPEGSGGGAGGSAAASLSLLGPGP
MPSQAPNGGVKYVSEPPDNLALLSTVAVPGGYIAPQRRASYEERGSRHRR
PGPAGGGGDADRDGDDLPPPANPGLTTGMSFDPNRDDGTLPFTLGSS*
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mRNA from alignment at L-elsbetiae_contig11837:543..2485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11837.1584.1 ID=mRNA_L-elsbetiae_contig11837.1584.1|Name=mRNA_L-elsbetiae_contig11837.1584.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1943bp|location=Sequence derived from alignment at L-elsbetiae_contig11837:543..2485+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGCCCTGGAGGCATCGCCGTCGCCGTCGCCGCTGCCGAGATGGAACAG
CATCCCTGCGCCCCCGCTCCCGGCGGTGCCGCCGTCGGCGGCCGCGGTGC
CGAGCGACTGGGTGGATCGCGTGCGGAAGATGCCGACGGTCGCGCCGCCC
CGCCCGTCCAGCCCCAACGTGGTGCACCGCATGGCCGGCGCTGCCCGCAC
CCCGTCGCCGCCGGAAGGAAGCGGCGGCGGCGCTGGCGGCAGCGCCGCCG
CGAGCTTGAGCTTGCTCGGCCCCGGGCCGATGCCCTCGCAGGCGCCGAAC
GGGGGCGTAAAGTACGTGTCCGAGCCGCCGGACAACCTGGCGCTCCTCTC
GACGGTGGCGGTGCCCGGGGGCTACATCGCGCCGCAGCGGCGCGCGTCGT
ACGAGGAGCGGGGCAGCCGTCACCGGCGCCCGGGACCCGCCGGCGGCGGC
GGCGATGCTGACCGCGACGGGGATGATCTGCCCCCACCTGCGAACCCGGG
CCTGACCACCGGGATGTCTTTCGACCCCAACAGGGATGATGGCACATTGC
CCTTCACGTTGGGGTCCTCGTAGACTGCGCGGTCTTGTTGTGTTGGGCAC
CCCCCCCCCCCCCCCCCCCCGTTATCGTTTTCTTTCGCGGACCAAGGGTG
TTCACGCCCCCTCCCTTATCCTCATTTTCCGGAGTATGGATGTCTTTTTG
TCGAAGGTAGGTACGGATTAGCTTTGTTGTATGTTGGTGCCGCTCGGATG
CCTCCGTGTGTTTGGTCGATGTGAGCACGTGGCATTTCTGGTTGGTTGAT
GTGAACACGGGCACCACCCCACCAGGGCGGCAGGTGTACATTATTGTTGT
TTTTGTTTTTGGTGTTACGGTGTGCGGCGGCGGATGGCGGGCGGCGGTCG
GTGAGAGTTTTTTTCACGCGTTCGAACGTGGCAAATGCCTGTGCGGCGAA
GAAAGTGACGGGGTACCCCGCGCACGTTGCTTGCTATTTAGTCTAGTGTG
TGCGCGTGTGGGTGTGTGGGTGTGTGGGTGTGTGGGTGTGCGTGTTCCTG
TTGTGTTTGTGTGTGTGCATGCGTGTGTGTGTGGTGAAGAGTTGCAAGAC
AATCCCAGCGCTGCGATAAAGACGTAATGTATGATATGTGTGGTTATCAT
TTGACCGCCTCTACCACCTCAAAGGGTTGTAGAGCTGTGCGATACTTATG
TACCCGAACAAAATGTACACCGTATCATGTGTTCAGTGGTAGCGAGCCTT
CACGATGGACGTCCCGAGAGGAAGCAGGCACAGTGGTGGTAGAGTGGGCG
GGGGGTGCTCATACCTTAAGTGTGACATTCTGTATTCTGGGTGTTTTGTA
TGTAGACTAGGTATGTAGACCAGCGCAAAAAAGCATTGCTGGGCGCGCGA
CACGTCCTCTGTGCCGACGCAGCACACGTCGCTTTTTCTCTGCAAACGGC
TGGGCCCTCAGGGCTCTCTATGTATGTACTCTCGTACACGTACATACATA
CGTGCCTTTTTTGGTCGTGGTTCCATGGGGTCGGCCCTGTCATTAGACTT
GGCGGGTCACGGTGCGGCTGTCAACGAGCATCGAAGTGAAGTGTCATGCA
CCAGAAGGGAACGAGCACACCTGCTATTTTCTCGGCAAGTTGCTCTCCGT
TGGTTGTACGGTACCCTTCGATAACCGGTGTTGATGAACGTCATGTAACG
TCTCAGTATTTTTCGCAGGGGCGCCGTGGGTGGCTTTTCTCTGCGATGTT
TTCTTTATTTTGTCTCTCGATATTTTTACTACTTTTTTTTGTCGTCATGC
GGCGGGAGGGAGGTTGGCGGTAGATCATGTGTTGCGTTGCGTTATTATGC
ACGCTGATTGCCGGAACATGGGGTGTACAGTAATACTTGCAAGATGCGGC
GGGTTTGATTTGATGACATGGGACGTTGGACACGTGAAGTAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11837:543..2485+

>mRNA_L-elsbetiae_contig11837.1584.1 ID=mRNA_L-elsbetiae_contig11837.1584.1|Name=mRNA_L-elsbetiae_contig11837.1584.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig11837:543..2485+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGACGGTCGCGCCGCCCCGCCCGTCCAGCCCCAACGTGGTGCACCG
CATGGCCGGCGCTGCCCGCACCCCGTCGCCGCCGGAAGGAAGCGGCGGCG
GCGCTGGCGGCAGCGCCGCCGCGAGCTTGAGCTTGCTCGGCCCCGGGCCG
ATGCCCTCGCAGGCGCCGAACGGGGGCGTAAAGTACGTGTCCGAGCCGCC
GGACAACCTGGCGCTCCTCTCGACGGTGGCGGTGCCCGGGGGCTACATCG
CGCCGCAGCGGCGCGCGTCGTACGAGGAGCGGGGCAGCCGTCACCGGCGC
CCGGGACCCGCCGGCGGCGGCGGCGATGCTGACCGCGACGGGGATGATCT
GCCCCCACCTGCGAACCCGGGCCTGACCACCGGGATGTCTTTCGACCCCA
ACAGGGATGATGGCACATTGCCCTTCACGTTGGGGTCCTCGTAGATGCCG
ACGGTCGCGCCGCCCCGCCCGTCCAGCCCCAACGTGGTGCACCGCATGGC
CGGCGCTGCCCGCACCCCGTCGCCGCCGGAAGGAAGCGGCGGCGGCGCTG
GCGGCAGCGCCGCCGCGAGCTTGAGCTTGCTCGGCCCCGGGCCGATGCCC
TCGCAGGCGCCGAACGGGGGCGTAAAGTACGTGTCCGAGCCGCCGGACAA
CCTGGCGCTCCTCTCGACGGTGGCGGTGCCCGGGGGCTACATCGCGCCGC
AGCGGCGCGCGTCGTACGAGGAGCGGGGCAGCCGTCACCGGCGCCCGGGA
CCCGCCGGCGGCGGCGGCGATGCTGACCGCGACGGGGATGATCTGCCCCC
ACCTGCGAACCCGGGCCTGACCACCGGGATGTCTTTCGACCCCAACAGGG
ATGATGGCACATTGCCCTTCACGTTGGGGTCCTCGTAG
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