mRNA_L-elsbetiae_contig11816.1567.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11816.1567.1
Unique NamemRNA_L-elsbetiae_contig11816.1567.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11816.1567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11816contigL-elsbetiae_contig11816:1390..2330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size941
Cds size831
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815384.901325-UTR-L-elsbetiae_contig11816:1389..14991622815384.901325-UTR-L-elsbetiae_contig11816:1389..1499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11816 1390..1499 +
1691682872.0700786-UTR-L-elsbetiae_contig11816:1389..14991691682872.0700786-UTR-L-elsbetiae_contig11816:1389..1499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11816 1390..1499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815384.9206371-CDS-L-elsbetiae_contig11816:1499..23301622815384.9206371-CDS-L-elsbetiae_contig11816:1499..2330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11816 1500..2330 +
1691682872.0792704-CDS-L-elsbetiae_contig11816:1499..23301691682872.0792704-CDS-L-elsbetiae_contig11816:1499..2330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11816 1500..2330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11816.1567.1prot_L-elsbetiae_contig11816.1567.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11816 1500..2330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11816.1567.1

>prot_L-elsbetiae_contig11816.1567.1 ID=prot_L-elsbetiae_contig11816.1567.1|Name=mRNA_L-elsbetiae_contig11816.1567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=277bp
MLLLRLPLLLERNHSLRLLLMLARERLAVGDQSSTPGGSHVTTSTFNAKQ
VLHRPGPCRPAGCFCGSFPSQLLAVWYKSLRLERGGMVWLLHPSSPSATA
STRHSVEVSGHIERRSSVEARTGGGSVELVTTATAVGDGRLEGISVIQHP
GLDSAWGQITSTSASAYASNSGSGSGSVWLELLGIVSSEVGWKVVLLLMM
MLLLCGYLVRPTRITGRSDAEMLLLLLTRHLERKLAERVSRTRLTIIPPS
ERVVRHSPYQAAAPLLGVPQSNRVLE*
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mRNA from alignment at L-elsbetiae_contig11816:1390..2330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11816.1567.1 ID=mRNA_L-elsbetiae_contig11816.1567.1|Name=mRNA_L-elsbetiae_contig11816.1567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=941bp|location=Sequence derived from alignment at L-elsbetiae_contig11816:1390..2330+ (Laminarionema elsbetiae ELsaHSoW15)
ATTTGAGTTGCTCCGCCGGCGGGCGCAGCAACTGCACCACCGAGAAGATT
ATCGAACGGGTTTGATGCCGCGACCAAAGCACCACCATCACCGGCTTGCT
GACCCCAGGGATGCTGCTGTTGCGGCTGCCGTTGTTGCTGGAGCGGAACC
ACAGCCTGCGGCTGTTGTTGATGTTGGCTCGGGAAAGGTTGGCCGTAGGG
GACCAAAGCAGCACCCCCGGCGGAAGCCACGTCACTACCTCCACTTTTAA
CGCCAAACAAGTCCTCCACCGCCCCGGCCCCTGCCGCCCCGCCGGCTGTT
TCTGCGGTTCCTTCCCCTCGCAGCTGCTGGCCGTATGGTACAAGAGCCTG
CGCCTCGAGCGTGGAGGCATGGTGTGGTTGTTGCACCCCTCCAGCCCCTC
CGCTACTGCCAGCACCCGCCATTCCGTTGAAGTCTCCGGTCATATCGAAA
GACGGAGCAGCGTTGAAGCCCGTACCGGCGGCGGCAGTGTGGAATTGGTT
ACCACCGCTACCGCTGTCGGGGACGGGCGCCTCGAAGGGATTAGTGTGAT
ACAACATCCCGGCCTTGACTCGGCTTGGGGGCAGATCACCTCCACCTCGG
CCTCCGCCTATGCCTCCAATTCCGGCTCCGGCTCCGGCTCCGTGTGGTTG
GAACTTCTGGGCATAGTTTCCAGCGAGGTTGGGTGGAAGGTTGTGCTGTT
GTTGATGATGATGTTGTTGTTGTGCGGGTACCTGGTGCGGCCGACTAGGA
TCACCGGGCGTTCCGACGCTGAAATGCTTCTGCTGCTGTTGACTCGGCAT
CTGGAACGGAAACTCGCCGAAAGGGTCAGCCGTACCAGGCTGACCATTAT
CCCACCCTCCGAAAGGGTCGTGCGTCATTCTCCCTACCAGGCAGCTGCGC
CGCTTCTCGGCGTCCCACAGTCGAATCGTGTCCTTGAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11816:1390..2330+

>mRNA_L-elsbetiae_contig11816.1567.1 ID=mRNA_L-elsbetiae_contig11816.1567.1|Name=mRNA_L-elsbetiae_contig11816.1567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1662bp|location=Sequence derived from alignment at L-elsbetiae_contig11816:1390..2330+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTGTTGCGGCTGCCGTTGTTGCTGGAGCGGAACCACAGCCTGCG
GCTGTTGTTGATGTTGGCTCGGGAAAGGTTGGCCGTAGGGGACCAAAGCA
GCACCCCCGGCGGAAGCCACGTCACTACCTCCACTTTTAACGCCAAACAA
GTCCTCCACCGCCCCGGCCCCTGCCGCCCCGCCGGCTGTTTCTGCGGTTC
CTTCCCCTCGCAGCTGCTGGCCGTATGGTACAAGAGCCTGCGCCTCGAGC
GTGGAGGCATGGTGTGGTTGTTGCACCCCTCCAGCCCCTCCGCTACTGCC
AGCACCCGCCATTCCGTTGAAGTCTCCGGTCATATCGAAAGACGGAGCAG
CGTTGAAGCCCGTACCGGCGGCGGCAGTGTGGAATTGGTTACCACCGCTA
CCGCTGTCGGGGACGGGCGCCTCGAAGGGATTAGTGTGATACAACATCCC
GGCCTTGACTCGGCTTGGGGGCAGATCACCTCCACCTCGGCCTCCGCCTA
TGCCTCCAATTCCGGCTCCGGCTCCGGCTCCGTGTGGTTGGAACTTCTGG
GCATAGTTTCCAGCGAGGTTGGGTGGAAGGTTGTGCTGTTGTTGATGATG
ATGTTGTTGTTGTGCGGGTACCTGGTGCGGCCGACTAGGATCACCGGGCG
TTCCGACGCTGAAATGCTTCTGCTGCTGTTGACTCGGCATCTGGAACGGA
AACTCGCCGAAAGGGTCAGCCGTACCAGGCTGACCATTATCCCACCCTCC
GAAAGGGTCGTGCGTCATTCTCCCTACCAGGCAGCTGCGCCGCTTCTCGG
CGTCCCACAGTCGAATCGTGTCCTTGAGTGAATGCTGCTGTTGCGGCTGC
CGTTGTTGCTGGAGCGGAACCACAGCCTGCGGCTGTTGTTGATGTTGGCT
CGGGAAAGGTTGGCCGTAGGGGACCAAAGCAGCACCCCCGGCGGAAGCCA
CGTCACTACCTCCACTTTTAACGCCAAACAAGTCCTCCACCGCCCCGGCC
CCTGCCGCCCCGCCGGCTGTTTCTGCGGTTCCTTCCCCTCGCAGCTGCTG
GCCGTATGGTACAAGAGCCTGCGCCTCGAGCGTGGAGGCATGGTGTGGTT
GTTGCACCCCTCCAGCCCCTCCGCTACTGCCAGCACCCGCCATTCCGTTG
AAGTCTCCGGTCATATCGAAAGACGGAGCAGCGTTGAAGCCCGTACCGGC
GGCGGCAGTGTGGAATTGGTTACCACCGCTACCGCTGTCGGGGACGGGCG
CCTCGAAGGGATTAGTGTGATACAACATCCCGGCCTTGACTCGGCTTGGG
GGCAGATCACCTCCACCTCGGCCTCCGCCTATGCCTCCAATTCCGGCTCC
GGCTCCGGCTCCGTGTGGTTGGAACTTCTGGGCATAGTTTCCAGCGAGGT
TGGGTGGAAGGTTGTGCTGTTGTTGATGATGATGTTGTTGTTGTGCGGGT
ACCTGGTGCGGCCGACTAGGATCACCGGGCGTTCCGACGCTGAAATGCTT
CTGCTGCTGTTGACTCGGCATCTGGAACGGAAACTCGCCGAAAGGGTCAG
CCGTACCAGGCTGACCATTATCCCACCCTCCGAAAGGGTCGTGCGTCATT
CTCCCTACCAGGCAGCTGCGCCGCTTCTCGGCGTCCCACAGTCGAATCGT
GTCCTTGAGTGA
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