mRNA_L-elsbetiae_contig11806.1560.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11806.1560.1
Unique NamemRNA_L-elsbetiae_contig11806.1560.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11806.1560.1 vs. uniprot
Match: D7FWM4_ECTSI (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM4_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 7.990e-27
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 SPSVCLFFLVLQDLQSSPFRVVDEINQGMDPRNERQVFSRIVLNSCGPNRKQYFLITPKLL 183
            S S  LF + LQDLQ SPFRVVDEINQGMDP+NERQVFSRIVLNSCGP+RKQYFLITPKLL
Sbjct:  227 SVSTILFLMALQDLQHSPFRVVDEINQGMDPKNERQVFSRIVLNSCGPSRKQYFLITPKLL 287
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BLAST of mRNA_L-elsbetiae_contig11806.1560.1 vs. uniprot
Match: A0A6H5JJB3_9PHAE (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJB3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.710e-26
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 SPSVCLFFLVLQDLQSSPFRVVDEINQGMDPRNERQVFSRIVLNSCGPNRKQYFLITPKLL 183
            S S  LF + LQDLQ SPFRVVDEINQGMDP+NERQVFSRIVLNSCGP+RKQYFLITPKLL
Sbjct: 1010 SVSTILFLMALQDLQHSPFRVVDEINQGMDPKNERQVFSRIVLNSCGPSRKQYFLITPKLL 1070
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BLAST of mRNA_L-elsbetiae_contig11806.1560.1 vs. uniprot
Match: A0A835YKC8_9STRA (Structural maintenance of chromosomes protein 5 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKC8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 8.420e-20
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 SPSVCLFFLVLQDLQSSPFRVVDEINQGMDPRNERQVFSRIVLNSCGPNRKQYFLITPKLL 183
            S S  L+ + +QDLQSSPFRVVDE+NQGMD  NER VFSRIV NSC  + KQ+FLITPKLL
Sbjct:  148 SVSTILYLMAMQDLQSSPFRVVDEVNQGMDAHNERLVFSRIVRNSCRTDCKQFFLITPKLL 208
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BLAST of mRNA_L-elsbetiae_contig11806.1560.1 vs. uniprot
Match: A0A7S3UTJ1_HETAK (Structural maintenance of chromosomes protein 5 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTJ1_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 2.060e-19
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 SPSVCLFFLVLQDLQSSPFRVVDEINQGMDPRNERQVFSRIVLNSCGPNRKQYFLITPKLL 183
            S +  ++ + LQD+ SSPFRVVDEINQGMD RNER VFSRIV N CG  R QYFLITPKLL
Sbjct:  360 SVATVIYLMALQDMISSPFRVVDEINQGMDERNERMVFSRIVRNCCGDRRPQYFLITPKLL 420
[Close]
BLAST of mRNA_L-elsbetiae_contig11806.1560.1 vs. uniprot
Match: A0A7S3UTK1_HETAK (Structural maintenance of chromosomes protein 5 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTK1_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 2.410e-19
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 SPSVCLFFLVLQDLQSSPFRVVDEINQGMDPRNERQVFSRIVLNSCGPNRKQYFLITPKLL 183
            S +  ++ + LQD+ SSPFRVVDEINQGMD RNER VFSRIV N CG  R QYFLITPKLL
Sbjct:  671 SVATVIYLMALQDMISSPFRVVDEINQGMDERNERMVFSRIVRNCCGDRRPQYFLITPKLL 731
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BLAST of mRNA_L-elsbetiae_contig11806.1560.1 vs. uniprot
Match: A0A7S2SUQ7_9STRA (Structural maintenance of chromosomes protein 5 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUQ7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.100e-17
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 SPSVCLFFLVLQDLQSSPFRVVDEINQGMDPRNERQVFSRIVLNSCGPNRKQYFLITPKLL 183
            S S  ++ + LQD+  SPFRVVDEINQGMD RNER VF RIV NS GP   QYFLITPKLL
Sbjct:  305 SVSTIMYLMALQDMVRSPFRVVDEINQGMDERNERIVFRRIVENSTGPESPQYFLITPKLL 365
[Close]
BLAST of mRNA_L-elsbetiae_contig11806.1560.1 vs. uniprot
Match: A0A1Y1YDZ8_9FUNG (Structural maintenance of chromosomes protein 5 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YDZ8_9FUNG)

HSP 1 Score: 84.3 bits (207), Expect = 1.390e-17
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 SPSVCLFFLVLQDLQSSPFRVVDEINQGMDPRNERQVFSRIVLNSCGPNRKQYFLITPKLL 183
            S S  L+ + LQ+L  +PFRVVDEINQGMDPRNER V S++V  +C PN  QYFLITPKLL
Sbjct:  982 SVSTILYLMALQELAKAPFRVVDEINQGMDPRNERMVHSQLVQVACQPNTSQYFLITPKLL 1042
[Close]
BLAST of mRNA_L-elsbetiae_contig11806.1560.1 vs. uniprot
Match: A0A397U5Y1_9GLOM (Structural maintenance of chromosomes protein 5 n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U5Y1_9GLOM)

HSP 1 Score: 84.0 bits (206), Expect = 1.900e-17
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 SPSVCLFFLVLQDLQSSPFRVVDEINQGMDPRNERQVFSRIVLNSCGPNRKQYFLITPKLL 183
            S S  ++ + LQ+L  +PFRVVDEINQGMDPRNER V S++V  +C PN  QYFLITPKLL
Sbjct: 1015 SVSTIMYLMALQELSKTPFRVVDEINQGMDPRNERLVHSQMVQTACRPNTSQYFLITPKLL 1075
[Close]
BLAST of mRNA_L-elsbetiae_contig11806.1560.1 vs. uniprot
Match: UPI001CF36566 (structural maintenance of chromosomes protein 5-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF36566)

HSP 1 Score: 83.2 bits (204), Expect = 3.530e-17
Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 SPSVCLFFLVLQDLQSSPFRVVDEINQGMDPRNERQVFSRIVLNSCGPNRKQYFLITPKLL 183
            S S  L+ + LQ+L   PFRVVDEINQGMDP NER+VF  +V  +C PN  QYFLITPKLL
Sbjct:  998 SVSTMLYLMALQELTKCPFRVVDEINQGMDPNNERRVFELVVETACRPNTSQYFLITPKLL 1058
[Close]
BLAST of mRNA_L-elsbetiae_contig11806.1560.1 vs. uniprot
Match: A0A397JLF0_9GLOM (Structural maintenance of chromosomes protein 5 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JLF0_9GLOM)

HSP 1 Score: 82.8 bits (203), Expect = 4.830e-17
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 SPSVCLFFLVLQDLQSSPFRVVDEINQGMDPRNERQVFSRIVLNSCGPNRKQYFLITPKLL 183
            S S  ++ + LQ+L  +PFRVVDEINQGMDPRNER V S+++  +C PN  QYFLITPKLL
Sbjct:  999 SVSTIMYLMALQELAKTPFRVVDEINQGMDPRNERLVHSQMIQTACRPNTAQYFLITPKLL 1059
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11806.1560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWM4_ECTSI7.990e-2785.25Structural maintenance of chromosomes protein 5 n=... [more]
A0A6H5JJB3_9PHAE5.710e-2685.25Structural maintenance of chromosomes protein 5 n=... [more]
A0A835YKC8_9STRA8.420e-2070.49Structural maintenance of chromosomes protein 5 (F... [more]
A0A7S3UTJ1_HETAK2.060e-1970.49Structural maintenance of chromosomes protein 5 n=... [more]
A0A7S3UTK1_HETAK2.410e-1970.49Structural maintenance of chromosomes protein 5 n=... [more]
A0A7S2SUQ7_9STRA1.100e-1768.85Structural maintenance of chromosomes protein 5 n=... [more]
A0A1Y1YDZ8_9FUNG1.390e-1765.57Structural maintenance of chromosomes protein 5 n=... [more]
A0A397U5Y1_9GLOM1.900e-1763.93Structural maintenance of chromosomes protein 5 n=... [more]
UPI001CF365663.530e-1763.93structural maintenance of chromosomes protein 5-li... [more]
A0A397JLF0_9GLOM4.830e-1762.30Structural maintenance of chromosomes protein 5 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11806contigL-elsbetiae_contig11806:4771..4953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog2880.D7FWM4
Preferred nameSMC5
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000166,GO:0000228,GO:0000280,GO:0000706,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000729,GO:0000781,GO:0000793,GO:0000794,GO:0000803,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007063,GO:0007088,GO:0007127,GO:0007131,GO:0007346,GO:0007568,GO:0007569,GO:0008144,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0010033,GO:0010243,GO:0010564,GO:0010638,GO:0010705,GO:0012505,GO:0014070,GO:0014074,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022414,GO:0030054,GO:0030176,GO:0030554,GO:0030915,GO:0031000,GO:0031224,GO:0031227,GO:0031974,GO:0031981,GO:0031984,GO:0032200,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034091,GO:0034093,GO:0034182,GO:0034184,GO:0034641,GO:0035061,GO:0035639,GO:0035825,GO:0035861,GO:0036094,GO:0036270,GO:0042175,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045840,GO:0045876,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051276,GO:0051304,GO:0051321,GO:0051716,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060249,GO:0061982,GO:0062033,GO:0065007,GO:0065008,GO:0070013,GO:0071139,GO:0071704,GO:0071840,GO:0072546,GO:0090068,GO:0090304,GO:0090398,GO:0090734,GO:0097159,GO:0097367,GO:0098687,GO:0098796,GO:0098827,GO:0106068,GO:0140013,GO:1901265,GO:1901360,GO:1901363,GO:1901698,GO:1902494,GO:1903046,GO:1990234,GO:2001252
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsCOG1196@1,KOG0979@2759
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-06_001240.2
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815384.3256927-CDS-L-elsbetiae_contig11806:4770..49531622815384.3256927-CDS-L-elsbetiae_contig11806:4770..4953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11806 4771..4953 -
1691682871.7320673-CDS-L-elsbetiae_contig11806:4770..49531691682871.7320673-CDS-L-elsbetiae_contig11806:4770..4953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11806 4771..4953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11806.1560.1prot_L-elsbetiae_contig11806.1560.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11806 4771..4953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11806.1560.1

>prot_L-elsbetiae_contig11806.1560.1 ID=prot_L-elsbetiae_contig11806.1560.1|Name=mRNA_L-elsbetiae_contig11806.1560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
SPSVCLFFLVLQDLQSSPFRVVDEINQGMDPRNERQVFSRIVLNSCGPNR
KQYFLITPKLL
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mRNA from alignment at L-elsbetiae_contig11806:4771..4953-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11806.1560.1 ID=mRNA_L-elsbetiae_contig11806.1560.1|Name=mRNA_L-elsbetiae_contig11806.1560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=183bp|location=Sequence derived from alignment at L-elsbetiae_contig11806:4771..4953- (Laminarionema elsbetiae ELsaHSoW15)
TCCCCATCCGTCTGTTTGTTTTTCTTGGTCTTGCAGGACCTCCAGAGCAG
CCCGTTCAGGGTGGTCGACGAGATCAACCAGGGCATGGACCCCAGGAACG
AGAGGCAGGTGTTCAGCCGCATCGTGCTCAACTCCTGCGGGCCCAACCGC
AAGCAGTACTTCCTCATCACACCCAAGCTGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11806:4771..4953-

>mRNA_L-elsbetiae_contig11806.1560.1 ID=mRNA_L-elsbetiae_contig11806.1560.1|Name=mRNA_L-elsbetiae_contig11806.1560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig11806:4771..4953- (Laminarionema elsbetiae ELsaHSoW15)
TCCCCATCCGTCTGTTTGTTTTTCTTGGTCTTGCAGGACCTCCAGAGCAG
CCCGTTCAGGGTGGTCGACGAGATCAACCAGGGCATGGACCCCAGGAACG
AGAGGCAGGTGTTCAGCCGCATCGTGCTCAACTCCTGCGGGCCCAACCGC
AAGCAGTACTTCCTCATCACACCCAAGCTGCTCTCCCCATCCGTCTGTTT
GTTTTTCTTGGTCTTGCAGGACCTCCAGAGCAGCCCGTTCAGGGTGGTCG
ACGAGATCAACCAGGGCATGGACCCCAGGAACGAGAGGCAGGTGTTCAGC
CGCATCGTGCTCAACTCCTGCGGGCCCAACCGCAAGCAGTACTTCCTCAT
CACACCCAAGCTGCTC
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