mRNA_L-elsbetiae_contig1179.1544.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1179.1544.1
Unique NamemRNA_L-elsbetiae_contig1179.1544.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1179.1544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1179contigL-elsbetiae_contig1179:26312..26867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size556
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1179.1544.1prot_L-elsbetiae_contig1179.1544.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1179 26542..26865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815381.2342083-UTR-L-elsbetiae_contig1179:26311..265411622815381.2342083-UTR-L-elsbetiae_contig1179:26311..26541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1179 26312..26541 +
1691682870.3434958-UTR-L-elsbetiae_contig1179:26311..265411691682870.3434958-UTR-L-elsbetiae_contig1179:26311..26541Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1179 26312..26541 +
1622815381.2567844-UTR-L-elsbetiae_contig1179:26865..268671622815381.2567844-UTR-L-elsbetiae_contig1179:26865..26867Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1179 26866..26867 +
1691682870.3637087-UTR-L-elsbetiae_contig1179:26865..268671691682870.3637087-UTR-L-elsbetiae_contig1179:26865..26867Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1179 26866..26867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815381.2456832-CDS-L-elsbetiae_contig1179:26541..268651622815381.2456832-CDS-L-elsbetiae_contig1179:26541..26865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 26542..26865 +
1691682870.3553593-CDS-L-elsbetiae_contig1179:26541..268651691682870.3553593-CDS-L-elsbetiae_contig1179:26541..26865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1179 26542..26865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1179.1544.1

>prot_L-elsbetiae_contig1179.1544.1 ID=prot_L-elsbetiae_contig1179.1544.1|Name=mRNA_L-elsbetiae_contig1179.1544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MPDGAAVGLAEIDLSAPTSEAPPAEAAPVGEGLNSGSRAPSAAGASEVVA
SLMALLGEAVRVVSVASGERVPLPTAEDARAALGAGVMPACPLSSPPSPC
APPSLSP*
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mRNA from alignment at L-elsbetiae_contig1179:26312..26867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1179.1544.1 ID=mRNA_L-elsbetiae_contig1179.1544.1|Name=mRNA_L-elsbetiae_contig1179.1544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=556bp|location=Sequence derived from alignment at L-elsbetiae_contig1179:26312..26867+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCTCTCAGGGTTCCCTCCTTGTCGTTTTTGTCCTATGGGCCCACCATT
ACCAGTAATATTTACACCGCAAGTGCGTTTCCAGCATTCACGATCACCGC
CCCACCTTCGCTACACGCGGCCTAGCGGAGAGCGACCGCAAAAAAATAAA
ACACCGCCGAGAATGCGCCAGCGAATACAACGTGCGAAGCATCCTTCTGC
GCCCCGCCACTTGTTGTGCCCCTCGTAATCATGCCAGACGGGGCAGCAGT
GGGGCTTGCGGAAATAGATCTATCGGCGCCGACGTCAGAGGCCCCACCGG
CCGAGGCTGCTCCAGTCGGAGAAGGACTGAACAGCGGGTCGCGAGCGCCG
TCAGCGGCGGGCGCATCCGAAGTTGTCGCGTCACTCATGGCTCTGCTAGG
GGAAGCAGTAAGAGTTGTTTCGGTGGCGAGCGGAGAGAGAGTACCACTCC
CGACAGCTGAGGACGCGAGAGCGGCGCTGGGTGCCGGAGTCATGCCGGCT
TGCCCACTTTCCTCTCCACCTTCCCCTTGCGCCCCGCCTTCGCTGTCGCC
GTAGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1179:26312..26867+

>mRNA_L-elsbetiae_contig1179.1544.1 ID=mRNA_L-elsbetiae_contig1179.1544.1|Name=mRNA_L-elsbetiae_contig1179.1544.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig1179:26312..26867+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAGACGGGGCAGCAGTGGGGCTTGCGGAAATAGATCTATCGGCGCC
GACGTCAGAGGCCCCACCGGCCGAGGCTGCTCCAGTCGGAGAAGGACTGA
ACAGCGGGTCGCGAGCGCCGTCAGCGGCGGGCGCATCCGAAGTTGTCGCG
TCACTCATGGCTCTGCTAGGGGAAGCAGTAAGAGTTGTTTCGGTGGCGAG
CGGAGAGAGAGTACCACTCCCGACAGCTGAGGACGCGAGAGCGGCGCTGG
GTGCCGGAGTCATGCCGGCTTGCCCACTTTCCTCTCCACCTTCCCCTTGC
GCCCCGCCTTCGCTGTCGCCGTAGATGCCAGACGGGGCAGCAGTGGGGCT
TGCGGAAATAGATCTATCGGCGCCGACGTCAGAGGCCCCACCGGCCGAGG
CTGCTCCAGTCGGAGAAGGACTGAACAGCGGGTCGCGAGCGCCGTCAGCG
GCGGGCGCATCCGAAGTTGTCGCGTCACTCATGGCTCTGCTAGGGGAAGC
AGTAAGAGTTGTTTCGGTGGCGAGCGGAGAGAGAGTACCACTCCCGACAG
CTGAGGACGCGAGAGCGGCGCTGGGTGCCGGAGTCATGCCGGCTTGCCCA
CTTTCCTCTCCACCTTCCCCTTGCGCCCCGCCTTCGCTGTCGCCGTAG
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