mRNA_L-elsbetiae_contig11784.1538.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11784.1538.1
Unique NamemRNA_L-elsbetiae_contig11784.1538.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11784.1538.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 3.080e-5
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 3 
Query:  171 CNKQLSYGVTRESSKTAELCAGYAKEGMTNVVKKRAACGHPSCNKKPSYGV 323
            C  + SYG+  + SK AE C+ ++K GMTNV KKR  CGH  C K+PSYG 
Sbjct:   36 CTARPSYGI--DGSKKAEFCSKHSKPGMTNVTKKR--CGHAGCIKQPSYGT 82
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11784.1538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY22_ECTSI3.080e-552.94EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11784contigL-elsbetiae_contig11784:3072..5179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-13_000820.1
Exons2
Model size1371
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11784.1538.1prot_L-elsbetiae_contig11784.1538.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11784 3530..4261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815380.7435868-UTR-L-elsbetiae_contig11784:3071..35291622815380.7435868-UTR-L-elsbetiae_contig11784:3071..3529Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11784 3072..3529 +
1691682870.0864618-UTR-L-elsbetiae_contig11784:3071..35291691682870.0864618-UTR-L-elsbetiae_contig11784:3071..3529Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11784 3072..3529 +
1622815380.7632716-UTR-L-elsbetiae_contig11784:4261..42951622815380.7632716-UTR-L-elsbetiae_contig11784:4261..4295Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11784 4262..4295 +
1691682870.1027129-UTR-L-elsbetiae_contig11784:4261..42951691682870.1027129-UTR-L-elsbetiae_contig11784:4261..4295Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11784 4262..4295 +
1622815380.7735255-UTR-L-elsbetiae_contig11784:5032..51791622815380.7735255-UTR-L-elsbetiae_contig11784:5032..5179Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11784 5033..5179 +
1691682870.1101747-UTR-L-elsbetiae_contig11784:5032..51791691682870.1101747-UTR-L-elsbetiae_contig11784:5032..5179Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11784 5033..5179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815380.753627-CDS-L-elsbetiae_contig11784:3529..42611622815380.753627-CDS-L-elsbetiae_contig11784:3529..4261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11784 3530..4261 +
1691682870.0949543-CDS-L-elsbetiae_contig11784:3529..42611691682870.0949543-CDS-L-elsbetiae_contig11784:3529..4261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11784 3530..4261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11784.1538.1

>prot_L-elsbetiae_contig11784.1538.1 ID=prot_L-elsbetiae_contig11784.1538.1|Name=mRNA_L-elsbetiae_contig11784.1538.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
MEGSKTVDVCAGHAKEGMMNVVKKLCAHPGCNKHPSYGMAGSIKTADFCA
GHAKEAMMNVADKRCGHPSCNKHSSYSVQGSKTAEFCAGHAKEGMMNVAD
KRCGHPSCNKHPSYSVQGSKTAEFCAGHAKEGMMNPRSGRVVGGEAGSAD
DASGRGNRDPAVSSSVGRVADGRKRRNSAPLPSARGEVSSASKRVRRPSQ
TAEEGMPVATNAANEAARESRLVLEEGVPLEKQSAAVCWKRDW*
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mRNA from alignment at L-elsbetiae_contig11784:3072..5179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11784.1538.1 ID=mRNA_L-elsbetiae_contig11784.1538.1|Name=mRNA_L-elsbetiae_contig11784.1538.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2108bp|location=Sequence derived from alignment at L-elsbetiae_contig11784:3072..5179+ (Laminarionema elsbetiae ELsaHSoW15)
GAACTATATGTCGATCTAACTTTGCCGCAAACAAACGCTCATCATTCGCC
AACAACAAACAGTTGCGGCCATCCCGCTGCACCAAGCAGCAGTCTTGCAA
CTTGAAAGGAAAGGAGTCCTCTGCTCAACGTGAGAGGGGGGATGGAAGCT
GAACAAGAGGTGCCGCCAGTTGCAACAAGCAGCTGTCGTACGGCGTGACT
CGTGAAAGTAGCAAGACGGCGGAGTTATGTGCTGGATACGCCAAGGAGGG
CATGACGAACGTCGTCAAGAAGAGGGCAGCGTGCGGCCACCCTAGTTGCA
ACAAGAAGCCGTCTTACGGCGTGCAAGGTAGCAAGACGGCGGAGTTCTGT
ACTGGACCAAGCTGGACACGCCAAGGGGGGCATGACGAACGTCGTCAAGA
AGAGGAAAGCGTGCGGCCACCCTAGTTGCAACAATTGAACAATTAACCGT
CCTACGGCATGGAAGGTAGCAAGACGGTGGATGTATGTGCTGGACATGCC
AAGGAGGGCATGATGAACGTCGTCAAGAAGCTGTGTGCCCACCCTGGTTG
CAACAAACATCCGTCCTACGGCATGGCAGGTAGCATCAAGACGGCGGATT
TCTGTGCTGGGCACGCCAAGGAGGCCATGATGAACGTCGCGGACAAGAGG
TGTGGCCACCCTAGTTGCAACAAGCATTCGTCCTACAGCGTGCAAGGTAG
CAAGACGGCGGAGTTCTGTGCTGGGCACGCCAAGGAGGGCATGATGAACG
TCGCGGACAAGAGGTGTGGCCACCCTAGTTGCAACAAGCATCCGTCCTAC
AGCGTGCAAGGTAGCAAGACGGCGGAGTTCTGTGCTGGGCACGCCAAGGA
GGGCATGATGAATCCACGGTCGGGCCGGGTAGTAGGTGGAGAGGCCGGTA
GTGCTGACGATGCGAGTGGACGAGGAAATCGAGATCCAGCCGTAAGCAGC
AGCGTGGGTCGTGTTGCGGACGGCAGAAAGCGCAGGAACAGTGCCCCTCT
GCCATCAGCGCGAGGCGAGGTCTCCTCCGCTAGCAAGCGCGTCAGACGAC
CCAGCCAAACCGCCGAAGAAGGGATGCCTGTGGCCACGAATGCAGCGAAC
GAAGCCGCGCGTGAAAGTAGGCTCGTTCTCGAGGAAGGTGTCCCTCTTGA
AAAACAATCTGCTGCAGTGTGTTGGAAGAGGGATTGGTGAAGGTTTCCTC
GGCTGGCGCCGCCGAGGCTGTGAGGTATGGATGTATGGATGTATGCAACA
CGTGGAAAGTAGTATTGCATAGCTCCCTTCGGTCTCGCGCATTGTCTACC
TTGGAGCTCATCTGAGTTTTTGGTGTGAGCCTGCATGCGGATAGGGACCC
GGGCGGTGCGGCGTTCTTTGTTTCTTCACCGACCTTGCTAACCTCCGATA
AGCAACTCCTGTGTTTTTTGCTCTTGATGGGCACGTCCACCGCTGCAACC
GTAAATAGACTACTACTGCGCTGTGGCATTCCATAAAGGGCATGCTGCAT
GTGTGTCTTGGATATGTGGCGCTGTGGGGAATGTGATGTGTTTCATCTGA
AGTCACACACAATCGTTGTGCCACAACCACCATCCCGCTGGTACCATTCA
ACTGCGACCGGCCCCGAACACTGCGGTGCTATAACGCACGAAATACCATG
GTCCACCTGCATCCACCGTTACCACTGCCCTTCATCAGAATCCCCGCCCC
CATCTGTCTTGGTTTCATCGCTCTCATAACGCACAACCGCATGGGGTTTC
CATTTGTCGTTGACGCTGCCGCAACTGCCGCCATGACTGCTGTCTGCATA
TGATAGATACAAGGCTTGCTCGATATATATGTCTCTGTGTTCTTTTTTTG
TGTTTTACGCGCCGTTTTTCTGTCGTCTCCTTCTCGTGCGCTCTTTTTTT
GTTGGCTCTTTTTGTGCCCTTTTTCGCTATTTGCGCTCGTTCGTTCTCGT
TGGACGCTCAGACGAACCACGGGTGGACAGAAGGAGAGACACCGGGCTGG
AGAGGTGCCGAAGACCCCGTAGTACTGTTTTCAGTTCGCGTTTTTTTGCA
TTTTGAATGTTTTTTTTCTTTTTTGAGGCAAAGAAAGCGCCCTTGACAAA
GATCCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11784:3072..5179+

>mRNA_L-elsbetiae_contig11784.1538.1 ID=mRNA_L-elsbetiae_contig11784.1538.1|Name=mRNA_L-elsbetiae_contig11784.1538.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1464bp|location=Sequence derived from alignment at L-elsbetiae_contig11784:3072..5179+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGGTAGCAAGACGGTGGATGTATGTGCTGGACATGCCAAGGAGGG
CATGATGAACGTCGTCAAGAAGCTGTGTGCCCACCCTGGTTGCAACAAAC
ATCCGTCCTACGGCATGGCAGGTAGCATCAAGACGGCGGATTTCTGTGCT
GGGCACGCCAAGGAGGCCATGATGAACGTCGCGGACAAGAGGTGTGGCCA
CCCTAGTTGCAACAAGCATTCGTCCTACAGCGTGCAAGGTAGCAAGACGG
CGGAGTTCTGTGCTGGGCACGCCAAGGAGGGCATGATGAACGTCGCGGAC
AAGAGGTGTGGCCACCCTAGTTGCAACAAGCATCCGTCCTACAGCGTGCA
AGGTAGCAAGACGGCGGAGTTCTGTGCTGGGCACGCCAAGGAGGGCATGA
TGAATCCACGGTCGGGCCGGGTAGTAGGTGGAGAGGCCGGTAGTGCTGAC
GATGCGAGTGGACGAGGAAATCGAGATCCAGCCGTAAGCAGCAGCGTGGG
TCGTGTTGCGGACGGCAGAAAGCGCAGGAACAGTGCCCCTCTGCCATCAG
CGCGAGGCGAGGTCTCCTCCGCTAGCAAGCGCGTCAGACGACCCAGCCAA
ACCGCCGAAGAAGGGATGCCTGTGGCCACGAATGCAGCGAACGAAGCCGC
GCGTGAAAGTAGGCTCGTTCTCGAGGAAGGTGTCCCTCTTGAAAAACAAT
CTGCTGCAGTGTGTTGGAAGAGGGATTGGTGAATGGAAGGTAGCAAGACG
GTGGATGTATGTGCTGGACATGCCAAGGAGGGCATGATGAACGTCGTCAA
GAAGCTGTGTGCCCACCCTGGTTGCAACAAACATCCGTCCTACGGCATGG
CAGGTAGCATCAAGACGGCGGATTTCTGTGCTGGGCACGCCAAGGAGGCC
ATGATGAACGTCGCGGACAAGAGGTGTGGCCACCCTAGTTGCAACAAGCA
TTCGTCCTACAGCGTGCAAGGTAGCAAGACGGCGGAGTTCTGTGCTGGGC
ACGCCAAGGAGGGCATGATGAACGTCGCGGACAAGAGGTGTGGCCACCCT
AGTTGCAACAAGCATCCGTCCTACAGCGTGCAAGGTAGCAAGACGGCGGA
GTTCTGTGCTGGGCACGCCAAGGAGGGCATGATGAATCCACGGTCGGGCC
GGGTAGTAGGTGGAGAGGCCGGTAGTGCTGACGATGCGAGTGGACGAGGA
AATCGAGATCCAGCCGTAAGCAGCAGCGTGGGTCGTGTTGCGGACGGCAG
AAAGCGCAGGAACAGTGCCCCTCTGCCATCAGCGCGAGGCGAGGTCTCCT
CCGCTAGCAAGCGCGTCAGACGACCCAGCCAAACCGCCGAAGAAGGGATG
CCTGTGGCCACGAATGCAGCGAACGAAGCCGCGCGTGAAAGTAGGCTCGT
TCTCGAGGAAGGTGTCCCTCTTGAAAAACAATCTGCTGCAGTGTGTTGGA
AGAGGGATTGGTGA
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