mRNA_L-elsbetiae_contig11781.1536.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11781.1536.1
Unique NamemRNA_L-elsbetiae_contig11781.1536.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11781.1536.1 vs. uniprot
Match: D7G5I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I3_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 8.230e-5
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   88 AVAVPGSVITVVGGSPKEDKEAPQKARGTADLPDLRMIIERSRRRVK 228
            A+AVPGSVITVV  S K D  A QKA    +LPDLRM+IERSRRR K
Sbjct:  433 AIAVPGSVITVVSDSAKGDDTA-QKA----NLPDLRMVIERSRRRGK 474
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11781.1536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5I3_ECTSI8.230e-568.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11781contigL-elsbetiae_contig11781:1655..5656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_000720.1
Exons3
Model size259
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11781.1536.1prot_L-elsbetiae_contig11781.1536.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11781 1655..5656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815380.6502173-CDS-L-elsbetiae_contig11781:1654..17221622815380.6502173-CDS-L-elsbetiae_contig11781:1654..1722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11781 1655..1722 +
1691682870.047355-CDS-L-elsbetiae_contig11781:1654..17221691682870.047355-CDS-L-elsbetiae_contig11781:1654..1722Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11781 1655..1722 +
1622815380.6668034-CDS-L-elsbetiae_contig11781:4301..43961622815380.6668034-CDS-L-elsbetiae_contig11781:4301..4396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11781 4302..4396 +
1691682870.0590682-CDS-L-elsbetiae_contig11781:4301..43961691682870.0590682-CDS-L-elsbetiae_contig11781:4301..4396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11781 4302..4396 +
1622815380.6829708-CDS-L-elsbetiae_contig11781:5561..56561622815380.6829708-CDS-L-elsbetiae_contig11781:5561..5656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11781 5562..5656 +
1691682870.0669982-CDS-L-elsbetiae_contig11781:5561..56561691682870.0669982-CDS-L-elsbetiae_contig11781:5561..5656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11781 5562..5656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11781.1536.1

>prot_L-elsbetiae_contig11781.1536.1 ID=prot_L-elsbetiae_contig11781.1536.1|Name=mRNA_L-elsbetiae_contig11781.1536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
GRTKHAGEDRAAAAAPAAALVKSDDTRAAAVAVPGSVITVVGGSPKEDKE
APQKARGTADLPDLRMIIERSRRRVKPSQEGGESGD
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mRNA from alignment at L-elsbetiae_contig11781:1655..5656+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11781.1536.1 ID=mRNA_L-elsbetiae_contig11781.1536.1|Name=mRNA_L-elsbetiae_contig11781.1536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4002bp|location=Sequence derived from alignment at L-elsbetiae_contig11781:1655..5656+ (Laminarionema elsbetiae ELsaHSoW15)
GGTAGGACCAAGCATGCCGGGGAGGATCGGGCGGCGGCGGCGGCGCCTGC
GGCTGCTTTGGTGAAGAGGTGAGCCGTATGTCTATAGTAGATACTGTAGA
CAAATTGGTCTCCGGGAACTTCTGTTCCGAAAGCTGAATCAGTAGGTTAT
GTATCGGCCTCCAACAACCCAAGAAAGACGTCGGTATGACAGCAGTTGTT
TTGAGCATGGCAGCACATGCCAGGAGACTGGACAGCTATTGTACCTGATG
AGCACAGACCGGCACGGCTCCGTTTGGTTCAAGGGAGCGGTAGCACAGAA
AACAAGCGTTGTTTGTTTGTTTCAGTATGCACAGCAGAGCTGCTGCTTCG
GTGCTCAAAACACAGCAGCAGCTGCTGTTTTTTTCAGTTGTAAATTTAAT
TTAGTAGTACTTTTGTTTTTGCTGATGCCTTCGCCTGTTTGCTTTGGTCT
TGCATCACCCCCTGCCGCTGTGCTCTCATGAGCTCGCTCCGAAGGGGTAT
CTTGTACTTCGTATAATAGGAGTATTTTTTTTTCCTCTCCCATTATTGGC
TTATTCGTCGTCTGGCCCCACTGGCCCCCTTCCTCCACTTCGACTAGCTA
GACGACCCAACCGGGGTGGCATGTGTATGTGGCTCGTTTTTTTTTTCGGT
CTTAATGGTAGGGCTATGTTTTTTTTTTGTGTTTTTGTGTGATTGTATGT
ATGTACTTAGCGCGCGCTCGTTTCTGTGTTGTGCAGTTGCCACGGCTTTT
GATGAAGGGGTTGAGCCGTGGCTCGTACATATATCTATGCGTGTATACTA
CATAGATTCTCCTATAACTTCTATGTTTTTTTTGCGGCGAGGATTTTTTT
TCTTTTTTTTTTAATGAACGTACAAATGCCGGTGCCCCGGTGGTCTAGTT
GGTACCCCCGAACAGCGTCTAGCAGGCAGGTCGTGAGTTCGAATCTCAGC
GGAAGCGACTTTTTCTTGCGAAGTGAGTTTTTTCTCTCGCTTCCGTCCCC
GTGTCGGTGGATAGCGCTATGTACTTGTAGCGTGTGTACACAAACTTCGA
CCTCACCGTCGACGAGGGAAAGGGGCGGCTGAACCCTTCTCGCGACAAAA
AACTTAGGCTTAGGCAAGCACCGCAGACGGGGGGAGGAGGTCCTTGGGGA
AAGGAACCCTTCTACTTCTGTGTGACCCCGGTTCAGTACTCTGGCAAGAT
GTCCTCGTGACAAGGAGCCCATCGAGTACATACTGGAAATAAGTGTGAAA
GACAAAAAATAAATAAAAATTAAAATAATTTTTTCCTACATACTCCTATG
ATATTTAGCCCGCGCTCATTGGTGTACATAGTGCCCAGTAGACGTCCCCG
AGTTGGCGCTCGCTACTCAGCGGTTTGGCGCCGGGCAGGGTAGCTAGCCG
CCGTTCTGCTTTCCGCAAACCCACCCTCCAGGACTGCTATCGGTTGCACC
GGGCGCTCGTGCTCTCGCGTGAATGGTCGGTCGATCCTCGGGAACGTTTG
AGACCCCTATCGAGTCCTTGCTCTAGTGTGGGGTAGGTTCCATCTTTGAT
TCATTGATTATTTTTAAAGAGTTACGTCACTTTGTATATGGAATACCGGG
TGAACCCCACGGAGTCACGGAGTGTCCCGTCTCAAATGTGGTTCCGTTTT
TGATCACACCTGATTTATACCTTTCAAAGGTTGAACAATATTACGTCACT
AGGTATATGGAATACCGTTGAACCCCACGGAATTCCGTCTCAAATGTGGG
CTAGGTTTCCGTTTTTGATTATCTGATTTTGAAAGAAAACAGTTCATCAA
AAATGGAACCTAACCCATTATTACGTCACTAGGTATATGGTATACCGGTG
AACCCCACGGAGTGTCCTGTCTCAAATGTGGGTTAGGTTCCATTTTTGAG
GATCTGATTTATCGTTTCAAAGGACGGTGGAAGTGGGAAAAAAAAAACGG
AGATGCGGCGTGGGTCGGATGTACCGTAGGTGACACAAGATACCACACCA
CACCCCCTGGACAGATTTTCAAAGGTCGATTCCTGCCCAAGAGAAAGAAA
GAGTGCCAGTGCCGAAAGGGGGTGGCGTTGGAAAAATCAAGTCGAGGACT
GTCCGAAAATGTGTCGTTTGGTGCTGGCGCCCTCTTCGTTACGGAGTAAT
CAAGCTCTAATAGTCGGTCCGGGGGGGAGGGGGAGTGGTATCTTGTGTCA
CATACGGTATGTACACACGCGGGAGAGCTAATGTGAGAATCAACAACAAC
AACAACCAACAACAACATGCATGCGGGGGGGCGAGGCACCTCACAAACGA
CGAGCGAAAGAATCGCCGCGCTCGCACATACGAAAAGTATGTAGTATGTA
TGAACAGGTCTTGGTTGCGGGGTTGGTTAGTTACCCACGCAGGACAGGTA
GACAAAATGGCCAGACAAAATGGCAACACGACAGTTGCACAGGTTTTCAA
AAAGAATGTGTCGTTCGGTGCTGGCACCCTCTTCGTTGCGGGAGTAGTGG
AGCTCTAAAAGTCGGTCCAGGGGGGGGGGCTGGTATCTTGTAGTCACCTT
CGGTTATAGCTGTTGTCTTCCCTCACGATACATATCCTGCGAACTGCGGC
CGTCTAATTTGGCTTTGCCGCGTCGCCTCTGTTGCCGCCGTGCACAGTGA
CGACACTCGGGCTGCGGCTGTGGCGGTGCCCGGGAGCGTCATCACGGTTG
TCGGCGGCTCCCCGAAAGAAGACAAAGAGGCCCCGCAGAAGGGTGAGTCG
GGCGCACGTAGTACCACTGTTGCATGTATGTAGCGTCGAAGCAACCCCCC
CCCCACCCCCCGCACGTCCCTGCGAGCCTGTGCTTTTTAGTAATGGTTGT
ACGAGTGTCAACTGTCAGCGGTTTACGTACGCCCGACTTGTGACAAAAAG
TCGTTACGGGGGGGGGGGGGGGGCTTTTGCAGACACACCGACCCTCCCTC
TGTTATCGTTCCCTACTGTAGGCTAATTTACAGGCTCAAAACCCGCGACG
CGTAAGTTTTGCCGGCGGAGGCTTGTTTGTTTGGGGGGTATTTGGAGAGA
AATGCATGGTGTGTACGGTAGGTAAGAGCGCAGGCAGACAACAGCAGTAG
TTCCATGTGTCTGGAAATGCAGAAAAACAAATTATCACGCCTCCACACAG
TGAACCCCGGGGGGGGGGGGGCATACCCTCTCCTGTGTGACCCCGGCTGG
TACGTAGGTCTAGTCAGCTTACTTGTACAAAGGACGTGCGCCGCAAGGTG
TGCACGTGCGCGTGCATCTACCGTGGGTGACACAGGATACCATACCCCCT
GGACAAATTTTTAAAGCTCGATTCCTCCCCTTGCCAGCAAGAACAAGAAT
GCCAGTGCCGAATAGGGGTGGGTGGTGTTGGAAAGATCCAGTCGAGGGGC
TGTCCGAAGATGTGCCGTTTGGTGCTGGCACCCTCTTCGTGACCGAGTGA
TGGAGCTCTAAAAGTCCAAGGGGGGAGAGGGAGGGGGATGGTATCTTGTG
TCACCTACGGTACACCGAGACATCCAACAGCAGTTTAGTATGCACGCTTC
ATAGCCGTTCCTTATTTTGGGCCACCTTCCACCACCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCGGNNNNNNNNCGCCCGGGCACCC
CTAGAACCCAAATACCTTTTTCGTATCCCCCTTCCTTCCCCCTCCCTTTT
TTGGGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCGCCGACGCCG
CCGGTGCCGCCCTGTCTCGCGGAGAACAACCAACCTGCCCGACGCCTCCC
CTACCCCCCCCCCTCTTTTCGGCCATTTTTTCCGTGCCCCTTTAACCCCT
GCCGTAGCGCGTGGAACAGCTGACCTGCCCGACCTCCGCATGATCATCGA
GCGCTCTCGACGGCGCGTGAAACCCTCTCAGGAGGGGGGGGAATCAGGGG
AC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11781:1655..5656+

>mRNA_L-elsbetiae_contig11781.1536.1 ID=mRNA_L-elsbetiae_contig11781.1536.1|Name=mRNA_L-elsbetiae_contig11781.1536.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig11781:1655..5656+ (Laminarionema elsbetiae ELsaHSoW15)
GGTAGGACCAAGCATGCCGGGGAGGATCGGGCGGCGGCGGCGGCGCCTGC
GGCTGCTTTGGTGAAGAGGGTAGGACCAAGCATGCCGGGGAGGATCGGGC
GGCGGCGGCGGCGCCTGCGGCTGCTTTGGTGAAGAGTGACGACACTCGGG
CTGCGGCTGTGGCGGTGCCCGGGAGCGTCATCACGGTTGTCGGCGGCTCC
CCGAAAGAAGACAAAGAGGCCCCGCAGAAGGTGACGACACTCGGGCTGCG
GCTGTGGCGGTGCCCGGGAGCGTCATCACGGTTGTCGGCGGCTCCCCGAA
AGAAGACAAAGAGGCCCCGCAGAAGGCGCGTGGAACAGCTGACCTGCCCG
ACCTCCGCATGATCATCGAGCGCTCTCGACGGCGCGTGAAACCCTCTCAG
GAGGGGGGGGAATCAGGGGACCGCGTGGAACAGCTGACCTGCCCGACCTC
CGCATGATCATCGAGCGCTCTCGACGGCGCGTGAAACCCTCTCAGGAGGG
GGGGGAATCAGGGGAC
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