mRNA_L-elsbetiae_contig11768.1529.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11768.1529.1
Unique NamemRNA_L-elsbetiae_contig11768.1529.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11768.1529.1 vs. uniprot
Match: A0A6H5L347_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L347_9PHAE)

HSP 1 Score: 429 bits (1103), Expect = 8.970e-144
Identity = 273/445 (61.35%), Postives = 317/445 (71.24%), Query Frame = 2 
Query:   53 PTSLRELIERVPQVLGAQAPTALHLEQCASADAVETMARAEARLLKSAETFFEPLFRVSVLDNLGRKEDPFAEPGDEDFPSQAPIEELKTERRRVDAIADRAISEQPPLRASAEKVQQQAAHLQERMEKLALQAEAAXXXXXXXXXXAGLLDTVYAGDGADGAAERARETDRLDDEALRRGAEVLALAEAKKAALVEEAAARRADLARQRREVDALEKEQ-AQALAEAAGPISNAGR--------RAEASREMESLAGVAGMSAAGLERCVREEEALVERNGGIRGWYEATVANVELLGGVRVSHRLLFGTGGGGGGVEGMELMVELGAGQIMEVTVSSVDGGLGSVQLCHAQSGA-----AGVSAPELEELRRTADALPAPQNLRMLVREALGRARCAAVVEEHVRLMRGRYVTAYTAPPREFTVTLNAGLVAGFRLHADYPKV 1345
            PTSLREL+ERVPQVL AQ+P ALH++  ASADA+E+++RAEARLLKSAETF    F VSVL+NLGR+ DPF EPGDEDFP QA  ++L+ ERRRVD I DRA+SEQ PLR+SAE+V++QA HLQER++ L LQ EA             ++D VYAGD  D A ER  +  R ++  LR  ++ L   EAK+  L E AAA RA+L  Q+REVD LE+EQ A ALA A    + AG         RAEASREME+L GVAGM  A LE C REE+ALV RN GIR WY ATVA VE LGGVR+SHRLLFG G GG  VEGME MV LG+G  MEVTVS+VDG L S QLCH Q G      AG+S  ELEE+RR ADALPAPQNL  LV EAL RA CAAV EEHVR +R RY+T Y +P RE TVT+ AG+VA F L ADYPKV
Sbjct:   14 PTSLRELLERVPQVLNAQSPGALHMQSRASADAMESVSRAEARLLKSAETFHPHTFSVSVLENLGRR-DPFIEPGDEDFPDQAADDDLEAERRRVDEITDRALSEQQPLRSSAERVEEQAMHLQERIKGLTLQVEADPALRSSGGARLSIMDKVYAGD--DRADEREADI-RNEETLLREDSQALGAVEAKRTVLAERAAAVRAELLLQQREVDLLEREQHAVALAAAETAATGAGGAAAGSNGWRAEASREMENLVGVAGMPEARLEACEREEDALVRRNTGIRDWYAATVAEVENLGGVRLSHRLLFGAGAGGR-VEGMEFMVGLGSGLTMEVTVSAVDGKLSSAQLCHGQGGGGAAGFAGISPSELEEMRRAADALPAPQNLGKLVIEALSRATCAAVREEHVRQVRRRYLTGYRSPSREVTVTMGAGIVACFHLAADYPKV 453
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11768.1529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L347_9PHAE8.970e-14461.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11768contigL-elsbetiae_contig11768:2307..5667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004100.1
Exons3
Model size1345
Cds size1332
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11768.1529.1prot_L-elsbetiae_contig11768.1529.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11768 2320..5667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815379.7366219-UTR-L-elsbetiae_contig11768:2306..23191622815379.7366219-UTR-L-elsbetiae_contig11768:2306..2319Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11768 2307..2319 +
1691682869.3868244-UTR-L-elsbetiae_contig11768:2306..23191691682869.3868244-UTR-L-elsbetiae_contig11768:2306..2319Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11768 2307..2319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815379.7465603-CDS-L-elsbetiae_contig11768:2319..23871622815379.7465603-CDS-L-elsbetiae_contig11768:2319..2387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11768 2320..2387 +
1691682869.3952415-CDS-L-elsbetiae_contig11768:2319..23871691682869.3952415-CDS-L-elsbetiae_contig11768:2319..2387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11768 2320..2387 +
1622815379.756804-CDS-L-elsbetiae_contig11768:2616..28161622815379.756804-CDS-L-elsbetiae_contig11768:2616..2816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11768 2617..2816 +
1691682869.406947-CDS-L-elsbetiae_contig11768:2616..28161691682869.406947-CDS-L-elsbetiae_contig11768:2616..2816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11768 2617..2816 +
1622815379.76604-CDS-L-elsbetiae_contig11768:4603..56671622815379.76604-CDS-L-elsbetiae_contig11768:4603..5667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11768 4604..5667 +
1691682869.4172375-CDS-L-elsbetiae_contig11768:4603..56671691682869.4172375-CDS-L-elsbetiae_contig11768:4603..5667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11768 4604..5667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11768.1529.1

>prot_L-elsbetiae_contig11768.1529.1 ID=prot_L-elsbetiae_contig11768.1529.1|Name=mRNA_L-elsbetiae_contig11768.1529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=444bp
MSTAAVGSTSQRAPTSLRELIERVPQVLGAQAPTALHLEQCASADAVETM
ARAEARLLKSAETFFEPLFRVSVLDNLGRKEDPFAEPGDEDFPSQAPIEE
LKTERRRVDAIADRAISEQPPLRASAEKVQQQAAHLQERMEKLALQAEAA
SSGGGGGGGGAGLLDTVYAGDGADGAAERARETDRLDDEALRRGAEVLAL
AEAKKAALVEEAAARRADLARQRREVDALEKEQAQALAEAAGPISNAGRR
AEASREMESLAGVAGMSAAGLERCVREEEALVERNGGIRGWYEATVANVE
LLGGVRVSHRLLFGTGGGGGGVEGMELMVELGAGQIMEVTVSSVDGGLGS
VQLCHAQSGAAGVSAPELEELRRTADALPAPQNLRMLVREALGRARCAAV
VEEHVRLMRGRYVTAYTAPPREFTVTLNAGLVAGFRLHADYPKV
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mRNA from alignment at L-elsbetiae_contig11768:2307..5667+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11768.1529.1 ID=mRNA_L-elsbetiae_contig11768.1529.1|Name=mRNA_L-elsbetiae_contig11768.1529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3361bp|location=Sequence derived from alignment at L-elsbetiae_contig11768:2307..5667+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTCAGCAAACCATGTCGACTGCTGCCGTGGGTTCGACGTCCCAACGTG
CACCGACTTCATTGCGAGAGCTGATAGAGAGGTGAGGATGGCTTTCACAA
CGTACTTCTTGCCGTTGTGTCTCTCTCTCCCTGTCTCCCTCGGAGGGGTG
CCTGTCACGCACTCACCGAGCTGCTCTTCTACAGCACTAGTACGTTGATC
AACCCTGAAACCACACACACACACACATACACACACACACACCAACGTAG
CCTTCTTTCGGCATCTCTGCTCCGCCCGGCCTCTCTCGTTGCAAAAAAAA
CGCCAACCAGAGTTCCGCAGGTACTCGGCGCGCAGGCACCCACCGCCCTG
CACCTGGAGCAATGCGCCAGCGCCGATGCCGTGGAGACCATGGCTCGAGC
CGAGGCACGCTTGCTCAAATCGGCCGAGACTTTCTTCGAGCCACTCTTCC
GTGTGTCGGTGCTGGATAATCTTGGGCGCAAGGAGGACCCTTTCGCCGAG
CCTGGCGACGGTGAGTGCAAGGCGTTCTCTGCTGCACCAGCGGTATGTAT
GTAAGCAGTATCGCTGTATGTACAGCAGAACCGGGAGATCGCGACCATCT
CTGCCAGCTCGGTGTACCATGCGCATGCCACTCGACGGCGGCAGCGGGGT
TGTTGCTACCTGTTTCTATCTAGATGTTGTGAAACCAGTCTCCTCCCTCT
CTCAAAGATTTGTTGTATATATCTAGATAGATAACACACACCCAGGGTAG
ACTAAACTATAACTCCATGTGTGATGTACATAAACGCGTGCTTGCTTGAA
CTCTTGCAACGGCATGGATAATATGCAGCCCAGCAGGCACGCTGCTGTTT
GCTGTCTGCTGCTGTTTGCTGTCTGCCGTCTGCTGTCTGCTATAGGGCAC
CTTCGATACTGCTGTTGGAATGCTCAATGTCAGTCATTCGTATAAGTACT
GCTATAAACAACAGTGCATAGGTAATCGCCTAGAAGTAGATACACCGGAA
TAATCTTCGGTATAAATACCATGTACATTGTAAAGTGGACGGGTCATTTT
ACACACCTACAACAGTGCGGGTCATACATTGAACCATCAGAGTAACGGTC
CATCAGACCATTGTCCTTTAGGATAATCTACTCAGGACGTTGCTACAGGC
CGGGCTAACCGTCTGTTTGCCGAGATCGGTAGGTTGCAATAGTCCGTGTG
TGTTCATCTTTCTGTGATATGTTGGAGGCTCGCCCCTGTGGTGCTCGCCC
CCACGTGCTCACTCTCCTACCGTCTTTTCTTTCTCACTTGTTCCAAGGCC
CTTGGCCTTTTCCTCCGAGTCCTCCGGGACTCTTGCGGGTCCCAGGTCCC
CTTTCTCTTTCCTGGTCTTTCGGCCAACTAAGCGCCAATATTCAAACCGT
CTTCTCTGGTCTACAACGAATGTACTTTACAACAGTCAGTCTGTGATCCC
TCTGCACGCGCTGTTCCTAGATGCACAGCAGAAGTGGCCATTGCCAGGGT
GCAACCAACAGATACTTCCTACCACTGTCACAAGAGTGCACGGCGATGCG
GTAGTGCACTATTTACTACATACCCACGCGGAGGCCGACCCCTTCAACAG
AGGGGGCACTCCGCGTTTGTTCTGTGACCCCCAACCTGAAGGAAGGCCAG
ACTGCTGCACCCCTGCGTAATGCACTCACTTCGTGTACGTAGTATCTATG
TAGTTGCAGTCCAAGAAGAGCTTTTATTCAGGCTCGATGTGTTACCGTGA
GCTTCTGGTGTGACCGAGGGCCGGTGCTGAAGCCGGAGCACATGCTGGGT
GTTTTTGTTGTAACGCACGGCGCAATTTCGTCAGTCTCTCCCTCTCCATC
CCAAACCTGTAGTACACCTCCCAACAAGAACGTAGATAGCGGGATATAGC
CTTGTCTCTTTGGAGCCCAGCGCTACTCGGAAAGTTCCAGGAAAGAGCAA
ACAAGCCGCGTGCGTAAACGGTGTGTGCGCCTCGTTCAGCAGATCGTGTA
AACAATAGCTTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGATCCACCCCTTCCGCTGGTTTTGTGTCCACTGTGACGCGATCAAT
AGACTGACGTCACAGCAGTAAATAAAGAGGTATTTCAGATTTACAACCTC
CGGCCCGGGGTTCTCCTGCCTCCAGCAGCTAGCCGGGGACAGCAGACACC
AGGTATAATCTCCTTGAATCTCGGCTTCTCTGACTTTTGCTGCTGCGGCG
TGAATTCATTATGGTCCTGGTCTATTTTCCCAAAAAACTAACCGCAGAGG
ACTTTCCGAGCCAAGCGCCGATCGAGGAGCTCAAGACAGAACGGCGTCGG
GTAGACGCGATCGCCGACCGCGCCATCTCCGAACAGCCCCCACTGAGGGC
CTCCGCCGAGAAGGTCCAGCAGCAGGCCGCGCACCTGCAGGAGCGGATGG
AGAAGCTGGCCCTGCAAGCAGAGGCGGCCTCTAGCGGCGGCGGCGGCGGC
GGCGGCGGCGCGGGACTTCTGGACACGGTGTACGCCGGCGACGGGGCGGA
CGGCGCCGCCGAGAGGGCCCGCGAGACCGACCGCTTGGACGACGAGGCCC
TGCGGCGGGGCGCCGAGGTCCTAGCCCTGGCCGAGGCGAAGAAGGCGGCG
CTGGTGGAGGAGGCGGCCGCCAGGAGAGCGGACCTCGCGCGGCAGCGGCG
GGAGGTGGACGCCCTCGAGAAGGAGCAGGCCCAGGCCCTGGCGGAAGCGG
CGGGGCCGATCTCGAACGCCGGGCGGAGGGCGGAGGCGTCCAGGGAGATG
GAGAGTCTCGCCGGGGTGGCGGGCATGTCGGCGGCCGGGCTGGAGCGCTG
CGTGCGAGAGGAGGAGGCCCTCGTGGAGAGGAACGGCGGCATCCGGGGCT
GGTACGAGGCCACCGTCGCCAACGTGGAGCTCCTGGGGGGGGTCCGGGTG
TCCCACCGGCTGCTCTTCGGCACCGGCGGCGGCGGCGGCGGGGTGGAGGG
GATGGAGCTCATGGTGGAGCTCGGGGCCGGCCAGATCATGGAGGTGACCG
TGTCCTCGGTGGACGGCGGGCTGGGCTCTGTGCAGCTGTGCCATGCCCAG
AGCGGCGCGGCGGGGGTATCGGCGCCGGAGCTGGAGGAGCTGAGGCGGAC
CGCGGACGCGCTCCCGGCCCCGCAGAACTTGCGGATGCTCGTGCGCGAGG
CCTTGGGCCGGGCGAGGTGCGCCGCGGTCGTGGAGGAGCACGTGCGGCTG
ATGAGGGGCAGATACGTTACCGCGTACACCGCGCCCCCGCGCGAGTTCAC
CGTGACCTTGAACGCCGGGTTGGTGGCTGGTTTCCGACTGCACGCGGACT
ACCCGAAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11768:2307..5667+

>mRNA_L-elsbetiae_contig11768.1529.1 ID=mRNA_L-elsbetiae_contig11768.1529.1|Name=mRNA_L-elsbetiae_contig11768.1529.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2664bp|location=Sequence derived from alignment at L-elsbetiae_contig11768:2307..5667+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGACTGCTGCCGTGGGTTCGACGTCCCAACGTGCACCGACTTCATT
GCGAGAGCTGATAGAGAGATGTCGACTGCTGCCGTGGGTTCGACGTCCCA
ACGTGCACCGACTTCATTGCGAGAGCTGATAGAGAGAGTTCCGCAGGTAC
TCGGCGCGCAGGCACCCACCGCCCTGCACCTGGAGCAATGCGCCAGCGCC
GATGCCGTGGAGACCATGGCTCGAGCCGAGGCACGCTTGCTCAAATCGGC
CGAGACTTTCTTCGAGCCACTCTTCCGTGTGTCGGTGCTGGATAATCTTG
GGCGCAAGGAGGACCCTTTCGCCGAGCCTGGCGACGAGTTCCGCAGGTAC
TCGGCGCGCAGGCACCCACCGCCCTGCACCTGGAGCAATGCGCCAGCGCC
GATGCCGTGGAGACCATGGCTCGAGCCGAGGCACGCTTGCTCAAATCGGC
CGAGACTTTCTTCGAGCCACTCTTCCGTGTGTCGGTGCTGGATAATCTTG
GGCGCAAGGAGGACCCTTTCGCCGAGCCTGGCGACGAGGACTTTCCGAGC
CAAGCGCCGATCGAGGAGCTCAAGACAGAACGGCGTCGGGTAGACGCGAT
CGCCGACCGCGCCATCTCCGAACAGCCCCCACTGAGGGCCTCCGCCGAGA
AGGTCCAGCAGCAGGCCGCGCACCTGCAGGAGCGGATGGAGAAGCTGGCC
CTGCAAGCAGAGGCGGCCTCTAGCGGCGGCGGCGGCGGCGGCGGCGGCGC
GGGACTTCTGGACACGGTGTACGCCGGCGACGGGGCGGACGGCGCCGCCG
AGAGGGCCCGCGAGACCGACCGCTTGGACGACGAGGCCCTGCGGCGGGGC
GCCGAGGTCCTAGCCCTGGCCGAGGCGAAGAAGGCGGCGCTGGTGGAGGA
GGCGGCCGCCAGGAGAGCGGACCTCGCGCGGCAGCGGCGGGAGGTGGACG
CCCTCGAGAAGGAGCAGGCCCAGGCCCTGGCGGAAGCGGCGGGGCCGATC
TCGAACGCCGGGCGGAGGGCGGAGGCGTCCAGGGAGATGGAGAGTCTCGC
CGGGGTGGCGGGCATGTCGGCGGCCGGGCTGGAGCGCTGCGTGCGAGAGG
AGGAGGCCCTCGTGGAGAGGAACGGCGGCATCCGGGGCTGGTACGAGGCC
ACCGTCGCCAACGTGGAGCTCCTGGGGGGGGTCCGGGTGTCCCACCGGCT
GCTCTTCGGCACCGGCGGCGGCGGCGGCGGGGTGGAGGGGATGGAGCTCA
TGGTGGAGCTCGGGGCCGGCCAGATCATGGAGGTGACCGTGTCCTCGGTG
GACGGCGGGCTGGGCTCTGTGCAGCTGTGCCATGCCCAGAGCGGCGCGGC
GGGGGTATCGGCGCCGGAGCTGGAGGAGCTGAGGCGGACCGCGGACGCGC
TCCCGGCCCCGCAGAACTTGCGGATGCTCGTGCGCGAGGCCTTGGGCCGG
GCGAGGTGCGCCGCGGTCGTGGAGGAGCACGTGCGGCTGATGAGGGGCAG
ATACGTTACCGCGTACACCGCGCCCCCGCGCGAGTTCACCGTGACCTTGA
ACGCCGGGTTGGTGGCTGGTTTCCGACTGCACGCGGACTACCCGAAGGTA
AGGACTTTCCGAGCCAAGCGCCGATCGAGGAGCTCAAGACAGAACGGCGT
CGGGTAGACGCGATCGCCGACCGCGCCATCTCCGAACAGCCCCCACTGAG
GGCCTCCGCCGAGAAGGTCCAGCAGCAGGCCGCGCACCTGCAGGAGCGGA
TGGAGAAGCTGGCCCTGCAAGCAGAGGCGGCCTCTAGCGGCGGCGGCGGC
GGCGGCGGCGGCGCGGGACTTCTGGACACGGTGTACGCCGGCGACGGGGC
GGACGGCGCCGCCGAGAGGGCCCGCGAGACCGACCGCTTGGACGACGAGG
CCCTGCGGCGGGGCGCCGAGGTCCTAGCCCTGGCCGAGGCGAAGAAGGCG
GCGCTGGTGGAGGAGGCGGCCGCCAGGAGAGCGGACCTCGCGCGGCAGCG
GCGGGAGGTGGACGCCCTCGAGAAGGAGCAGGCCCAGGCCCTGGCGGAAG
CGGCGGGGCCGATCTCGAACGCCGGGCGGAGGGCGGAGGCGTCCAGGGAG
ATGGAGAGTCTCGCCGGGGTGGCGGGCATGTCGGCGGCCGGGCTGGAGCG
CTGCGTGCGAGAGGAGGAGGCCCTCGTGGAGAGGAACGGCGGCATCCGGG
GCTGGTACGAGGCCACCGTCGCCAACGTGGAGCTCCTGGGGGGGGTCCGG
GTGTCCCACCGGCTGCTCTTCGGCACCGGCGGCGGCGGCGGCGGGGTGGA
GGGGATGGAGCTCATGGTGGAGCTCGGGGCCGGCCAGATCATGGAGGTGA
CCGTGTCCTCGGTGGACGGCGGGCTGGGCTCTGTGCAGCTGTGCCATGCC
CAGAGCGGCGCGGCGGGGGTATCGGCGCCGGAGCTGGAGGAGCTGAGGCG
GACCGCGGACGCGCTCCCGGCCCCGCAGAACTTGCGGATGCTCGTGCGCG
AGGCCTTGGGCCGGGCGAGGTGCGCCGCGGTCGTGGAGGAGCACGTGCGG
CTGATGAGGGGCAGATACGTTACCGCGTACACCGCGCCCCCGCGCGAGTT
CACCGTGACCTTGAACGCCGGGTTGGTGGCTGGTTTCCGACTGCACGCGG
ACTACCCGAAGGTA
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