mRNA_L-elsbetiae_contig11768.1528.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11768.1528.1
Unique NamemRNA_L-elsbetiae_contig11768.1528.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11768.1528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11768contigL-elsbetiae_contig11768:751..1221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size458
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11768.1528.1prot_L-elsbetiae_contig11768.1528.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11768 906..1221 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815379.650025-UTR-L-elsbetiae_contig11768:750..9051622815379.650025-UTR-L-elsbetiae_contig11768:750..905Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11768 751..905 -
1691682869.3379865-UTR-L-elsbetiae_contig11768:750..9051691682869.3379865-UTR-L-elsbetiae_contig11768:750..905Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11768 751..905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815379.6931515-CDS-L-elsbetiae_contig11768:905..9861622815379.6931515-CDS-L-elsbetiae_contig11768:905..986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11768 906..986 -
1691682869.3658798-CDS-L-elsbetiae_contig11768:905..9861691682869.3658798-CDS-L-elsbetiae_contig11768:905..986Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11768 906..986 -
1622815379.7075932-CDS-L-elsbetiae_contig11768:999..12211622815379.7075932-CDS-L-elsbetiae_contig11768:999..1221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11768 1000..1221 -
1691682869.3790243-CDS-L-elsbetiae_contig11768:999..12211691682869.3790243-CDS-L-elsbetiae_contig11768:999..1221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11768 1000..1221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11768.1528.1

>prot_L-elsbetiae_contig11768.1528.1 ID=prot_L-elsbetiae_contig11768.1528.1|Name=mRNA_L-elsbetiae_contig11768.1528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
TAVPVASPKPKKRIQFVARKESKSSSGDTRKSESSSGSGDDESKIDLEAS
ASAEKHDTSPPLAAAPAAAPAAAPPKTPFSLAKLKQNPKQPPAVAAGPPR
*
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mRNA from alignment at L-elsbetiae_contig11768:751..1221-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11768.1528.1 ID=mRNA_L-elsbetiae_contig11768.1528.1|Name=mRNA_L-elsbetiae_contig11768.1528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=471bp|location=Sequence derived from alignment at L-elsbetiae_contig11768:751..1221- (Laminarionema elsbetiae ELsaHSoW15)
ACGGCGGTGCCTGTTGCTTCGCCCAAGCCGAAAAAGCGAATTCAGTTCGT
GGCTCGAAAAGAATCGAAGAGCAGCAGTGGCGATACCAGAAAGAGCGAAA
GCAGCAGTGGCAGTGGTGATGATGAGAGCAAGATCGATCTTGAGGCGAGC
GCGTCAGCAGAAAAGCACGACACATCGCCGCCGCTAGCGGCAGCACCAGC
GGCAGCACCAGCGGCAGCACCAGCGGCAGCACCAGCCAAAAACACCGTTC
TCGCTGGCGAAACTGAAACAGAACCCGAAGCAGCCACCAGCGGTAGCAGC
TGGGCCGCCAAGATGATGTCCTCCATGGCACAGCTTCCCACGAGCGGCAG
CACCTCCCAGTGGGGCGCACTCGCTTCCGGCCCAGCAGAGAAGAAGAGCA
CCGCGGCCGTTGAGACTATGGGCGCCGACGCAGACGAGGGTGGAGGCGAA
GAAGGAGAACAAGTTGGCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11768:751..1221-

>mRNA_L-elsbetiae_contig11768.1528.1 ID=mRNA_L-elsbetiae_contig11768.1528.1|Name=mRNA_L-elsbetiae_contig11768.1528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig11768:751..1221- (Laminarionema elsbetiae ELsaHSoW15)
ACGGCGGTGCCTGTTGCTTCGCCCAAGCCGAAAAAGCGAATTCAGTTCGT
GGCTCGAAAAGAATCGAAGAGCAGCAGTGGCGATACCAGAAAGAGCGAAA
GCAGCAGTGGCAGTGGTGATGATGAGAGCAAGATCGATCTTGAGGCGAGC
GCGTCAGCAGAAAAGCACGACACATCGCCGCCGCTAGCGGCAGCACCAGC
GGCAGCACCAGCGGCAGCACCAACGGCGGTGCCTGTTGCTTCGCCCAAGC
CGAAAAAGCGAATTCAGTTCGTGGCTCGAAAAGAATCGAAGAGCAGCAGT
GGCGATACCAGAAAGAGCGAAAGCAGCAGTGGCAGTGGTGATGATGAGAG
CAAGATCGATCTTGAGGCGAGCGCGTCAGCAGAAAAGCACGACACATCGC
CGCCGCTAGCGGCAGCACCAGCGGCAGCACCAGCGGCAGCACCACCAAAA
ACACCGTTCTCGCTGGCGAAACTGAAACAGAACCCGAAGCAGCCACCAGC
GGTAGCAGCTGGGCCGCCAAGATGACCAAAAACACCGTTCTCGCTGGCGA
AACTGAAACAGAACCCGAAGCAGCCACCAGCGGTAGCAGCTGGGCCGCCA
AGATGA
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