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Homology
BLAST of mRNA_L-elsbetiae_contig11751.1520.1 vs. uniprot
Match: A0A6H5KMF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF0_9PHAE) HSP 1 Score: 125 bits (314), Expect = 8.220e-29 Identity = 106/203 (52.22%), Postives = 116/203 (57.14%), Query Frame = 1
Query: 265 MLSVGPLGDDSEALRLEAMAGRGSGGGGSS-------APSVHAIRCFNSQTELCALDLLRSGCIQDGDDEAAAAVAGSTQAGNGIILRGGAARRSTASRPLDLGSVPVLPFLFSGGLDLAHKTSDSNKGSSGXXXXXXXXXXXXX---------------RVFDLCLTRRERDAEVLRVVEAFGLNQDQARLLWRCARWFRPV 807
MLSVGPLGDDSEALRLEA A G+ + S+HAIRCFN+QT+L ALDLLR+G + GDD A R LDL SVPVL FL SGGL S N XXXXXXXXXXXXX RVFDLCLTR ER+AEV + VEAF LN+DQARLLWRCA WFRP
Sbjct: 1 MLSVGPLGDDSEALRLEATARGGAXXXXXXXXXXXXXSRSIHAIRCFNAQTDLSALDLLRNGRL--GDDXXXXXX---XXXXXXXXXXXNALGRGKGL--LDLDSVPVLRFLLSGGLAPDDCNSSGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDRVFDLCLTRGERNAEVSQTVEAFRLNRDQARLLWRCATWFRPA 196
BLAST of mRNA_L-elsbetiae_contig11751.1520.1 vs. uniprot
Match: D8LH01_ECTSI (Prematurely terminated mRNA decay factor-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH01_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 6.350e-10 Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 265 MLSVGPLGDDSEALRLEAMAG--------RGSGGGGSSAPSVHAIRCFNSQTELCALDLLRSGCIQDGD 447
MLSVGPLGDDSEALRLEAMAG +A S+HAIRCFN+QT L A+DLLR+G + D D
Sbjct: 1 MLSVGPLGDDSEALRLEAMAGGXXXXXXXXXXXXXXXNARSIHAIRCFNAQTHLSAVDLLRNGRLGDDD 69
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 71.2 |
| Seed ortholog evalue | 8.2e-10 |
| Seed eggNOG ortholog | 2880.D8LH01 |
| KEGG ko | ko:K10706 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
| EggNOG OGs | COG1112@1,KOG1802@2759 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko03021 |
| Exons | 5 |
| Model size | 816 |
| Cds size | 816 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815378.9316237-CDS-L-elsbetiae_contig11751:997..1332 | 1622815378.9316237-CDS-L-elsbetiae_contig11751:997..1332 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11751 998..1332 - |
| 1691682868.9152987-CDS-L-elsbetiae_contig11751:997..1332 | 1691682868.9152987-CDS-L-elsbetiae_contig11751:997..1332 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11751 998..1332 - |
| 1622815378.985415-CDS-L-elsbetiae_contig11751:2584..2672 | 1622815378.985415-CDS-L-elsbetiae_contig11751:2584..2672 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11751 2585..2672 - |
| 1691682868.9286451-CDS-L-elsbetiae_contig11751:2584..2672 | 1691682868.9286451-CDS-L-elsbetiae_contig11751:2584..2672 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11751 2585..2672 - |
| 1622815378.9976904-CDS-L-elsbetiae_contig11751:3242..3402 | 1622815378.9976904-CDS-L-elsbetiae_contig11751:3242..3402 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11751 3243..3402 - |
| 1691682868.9383755-CDS-L-elsbetiae_contig11751:3242..3402 | 1691682868.9383755-CDS-L-elsbetiae_contig11751:3242..3402 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11751 3243..3402 - |
| 1622815379.0957208-CDS-L-elsbetiae_contig11751:4682..4801 | 1622815379.0957208-CDS-L-elsbetiae_contig11751:4682..4801 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11751 4683..4801 - |
| 1691682868.9489272-CDS-L-elsbetiae_contig11751:4682..4801 | 1691682868.9489272-CDS-L-elsbetiae_contig11751:4682..4801 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11751 4683..4801 - |
| 1622815379.107152-CDS-L-elsbetiae_contig11751:5429..5543 | 1622815379.107152-CDS-L-elsbetiae_contig11751:5429..5543 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11751 5430..5543 - |
| 1691682868.958168-CDS-L-elsbetiae_contig11751:5429..5543 | 1691682868.958168-CDS-L-elsbetiae_contig11751:5429..5543 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11751 5430..5543 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11751.1520.1 >prot_L-elsbetiae_contig11751.1520.1 ID=prot_L-elsbetiae_contig11751.1520.1|Name=mRNA_L-elsbetiae_contig11751.1520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=272bp
RGQGRGGDEEENDGEEEGDTTGKAKGGGGSGCGKLYLKILCLTESKEAAS
SYGKGDIWALSATGRFLDGSNDDVVFCRSLWHGVSSQGMLSVGPLGDDSE
ALRLEAMAGRGSGGGGSSAPSVHAIRCFNSQTELCALDLLRSGCIQDGDD
EAAAAVAGSTQAGNGIILRGGAARRSTASRPLDLGSVPVLPFLFSGGLDL
AHKTSDSNKGSSGGGGGGGDGDGEGERVFDLCLTRRERDAEVLRVVEAFG
LNQDQARLLWRCARWFRPVATG back to topmRNA from alignment at L-elsbetiae_contig11751:998..5543- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig11751.1520.1 ID=mRNA_L-elsbetiae_contig11751.1520.1|Name=mRNA_L-elsbetiae_contig11751.1520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4546bp|location=Sequence derived from alignment at L-elsbetiae_contig11751:998..5543- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGGCAGGGGCGGGGTGGCGACGAAGAAGAAAACGACGGCGAAGAGGA
AGGCGACACCACTGGCAAGGCCAAGGGCGGGGGCGGCAGTGGCTGCGGAA
AGCTGTACCTCAAGGTCTGGCAAACGCTACTCCCTACTAGAGCGTCATCC
CTCGTCTGCAGTAACTCAATCGCACTTTTTTCCAGTATTGTAGAAGGGCG
TACCGTATCGTCCAACCTTTTGTGTGTACACGATAGATTGGCTGAGGGCT
CTTCTGTCCCTGCCGTTGTCCACGGTTAAAACTCGCCCCCTTCGGCACTT
TCCTTCTTGGAACTCTCGCTCGATTCATTTCATGGAATTTCTGAGAGGGG
AAGAGAGAAAGGGGCAGAGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGAGATAATGGAGAGAGATAGGGAG
AGTTGGGCGAAAGAAAGCGATGCGAAATGCGGAGAAAAAATAGTCTTGCT
GTGTCGGGCGGGCGGGCTTGGTTATGGTAGATGTAGACTTTCTCTGTTTC
GCATGCGACCGCGGGCGCGACAGATCGGAGACTATGTGTGTTTTGTGAGT
AGCTGCTGCTGCTGCTGCTGGAGAAGAAGTCGTGCGTGCGATTTCGGAAC
GCTCGCCACACCCTCTCCTCTTTCTGCCGCACCCAACGAACGCTTCACAA
TAGCGATGGCCCGCCTGCCTGCCTGCCTGCCTGCCTTGTCAGATTCTATG
CTTGACGGAGAGCAAGGAGGCCGCCTCTTCTTACGGGAAGGGAGACATCT
GGGCGCTGAGCGCGACCGGCCGTTTTCTGGACGGCAGCAACGATGATGTC
GTATTTTGCAGGCGAGTGTCGAGTCCAAAAGTCGGGACAATAAAGACGAA
GAGGTATGCGGGGGATATAGGAAGAGGCATGTCTGCCAACGCGGCTAAGT
CTCGGGGGGCCCACACACCCCTCCTGCTCTCGCGGTATCATCGTGGGATA
AAAAAAAAAAAGTGAGCGCCGTCGAAGCTTGTCCGGTCCCGATACACGTA
GCCCCCAAGGAGGGTGGTGCTATGTTGTCGTCTTTCTTCTCAGGGGGGCT
TTTCGTGCGGGCGGTTGTTGTAGGGGTGCAAGCACGCCCGCCCGAACCCC
CTTTTTTTTTGTCGATCAATAGAATAGCAAAAGTCTGTATGTTGAGGGGA
CGAGTTTCCTCTCGCGATGAGAGTGATGTGGGCGAGAGGCAGCATAATCC
GCCTGTAGCCTGAAAGTAACTCAAGAGAGATCCACCATCGTACACTAAAA
CTACTATAACGAGGCATCGGATCGGTCGGTCGGCCGAGAGGATCCGTCTC
TCTAGTTCCTAGTCAGCCAAGGTGACAACAACAAGTCATCATCAGAAGAC
ACGATTTTCCCAGGATTCCGGCCGGCCATGGTGTGGTTTGGCCGTGGATG
ACGCTGCCGGTCGACCAAGGATCCTGGGTCGTGACCTGTTTTTTTTGGGA
ATTTTCCAATTCCGCCGCAGGGGCGTTGACCAATCAGCGAATTGCGTGCC
ACAAAAACCTTTTTTTCCTGTTGTGTGAATGAAACGTTGAACGCCTGTTG
GGCGGCCAACACCAGTGGTCGGCGGAAAATCAGTGGCATGCCGTTCGCCT
CCTCTAGGGAACACCGTTAGGTGTATGTCTGTCTGTCTGTCTGTCTGTAT
GTCGTAGGCCAGCCACAATGGGCGCCTGGTTTTCGATAACAGCACAACGC
AGCAAATAAATCCAACACGCAAAACACGCCCAACCTCTCCTCCCGTTTCG
GACGGCCTGAAATGAAACAATAAAATTATGCTGCTGCAAACGACCTCTCT
AAATAAACATGAATAAGTGGGCATCGAGCCGAGCCCTAACAGAGCATCTG
AAGCTCGTATATCTGTGCGACAACTCCAGCCGGAAAGAAGACCAACCCAA
CCCTCCGCGGGCCCCCCGCGGGGGGGGGCAGAGCAAGAACTGATTGGCGG
GAGTTCGGCGCGCTCTTTGATCCATGAAAGCTAATTCCCGGCCTTGGGCT
CTCTCGGATTGTCGGCTTTTGGCTGCTCCTTGATTGGCTGCCTGCCTATG
CGGTGTCCGTCTGATGCTCACGTCTCGAAATAAAAAAAAAGGAGTCTATG
GCATGGGGTTTCTTCTCAGGGGATGCTGTCCGTCGGCCCCCTCGGGGACG
ACTCCGAAGCGCTGAGGCTCGAGGCCATGGCGGGCCGGGGAAGCGGCGGC
GGCGGCAGCAGCGCACCCTCCGTCCATGCCATTCGCTGCTTCAACTCACA
GGTGGTGGGGGCCACGTGGCGAACGCTACTACATAGGAGTACATAGTTCC
ATGCATGCTTCGTATACTTGGAAGTATACTGCTTGGTCGTGGGGCCTGTA
AAATTAGAAGAAAAAATGAGTGTGTATGCAGGTAAATTGTGAATAGATAA
ATATGGCCAAAGATGAAGGGAGTCAGTTATGATGTAATTCCGGTTGTACA
GAGTAGTATGTGTTGTTTTGTTGGTCCACCAATCAGTATCTCATCGGCGT
TCTGTAATATTCTCACGCCGCTTATATATTTAACTACATACATACATGGC
GCTTGCAGGAGAAAGAAGCGTTTCGTAGTTTTTTTTTGGTATGCCGCTGG
TTCGAGGGGATATGTAGGGGAGGGGCTCGACAGAAAGGAATATCGCCATT
TGTTTTTTTCTGACACGGGTTGCTCCACTCCTTTCTTTCCTTTCTGGCCG
CGTCGGCTGCTGAAGCTGGCTCGTTTTTTCCTTTTCCTTTGGCCTCTCTC
TCTTCCTACATTTATATATGTTTTTTTTATCTTCGCTCGCGTTTCTGCCT
GTCGTCTCTTTGCCAAGACAGACGGAGTTGTGCGCGCTGGACTTGCTGCG
GAGCGGCTGTATCCAAGACGGTGACGACGAGGCGGCGGCGGCGGTGGCGG
GCTCGACTCGTGAGTCCACCGCGCGTGAGAGAGAACACACTTACTTCGCT
GAGATTTGATTGGTTCTGTACAAGCAGTCAGGCTTTCCTTCTGTTTGGCT
ATTTTGTCGTTGTGCGGTTTGTGCTACATAAATACTGCGGTCATTTTTGT
GCTTTGCAGGATAGGCTGAAGAACGAAACTGTTGTAGATGTTCTCTCGTG
TCCGACAGCCGCCTCAGGCCCCGACCCGTCTGCCTTCTCCTTATGCACAA
TATGCGTCATCTGGGTGGAGAAATAGAGTGCGCAGTCCGTTTTCTCCTCA
CGTACAATAGGCGTCATCTGGGCGAAGAAATACAGCCGGCGGTCCGTCTT
TCTCCTCCGCACAGCAGTATGCGTCACCTGGGTGTCGGCCGACCTCGCAA
ATCTTTGCAGGGGAGGATGATGAACTCTTCTGATATTTAAGGTTGTGTTT
CTGCTCGCTTCGCCAAATATCACGTCACTGTTGTACATATGGAATACCGT
TTGAACCCCATATCGAGTCCTTGCTCTAGTGTGGGGTAGGTTCCATCTTT
GATTCGTTGTTTATTTTTAAACAAGAACATAGGGTCTCCGCAGTCCGTCT
TCTCCTCGTGTACAATACGCACCATCTGGGTTTAAATAGAAATAGTGTGT
GCCCCCCCCCCCGGTGCTCCTTCATTTTGTGTGTCACGCTTGCTCTCGGG
CTCGGATGCTCCCTGCATGCCACCCCGTGCACTCACGGACTTACTTCCCG
TTGTATTTTTGGCTGCCCTGGTCTCCCTGGTGCATAAAGTGGAAGTACCC
CGCGTTGCCCTCCTACTTCGAAGTACATAGATAAACACCAGTGCGAGCCG
ACTCTCTAAGTCGCAGGCTCGCCGTGCCCTGAAGTAAGTTTGCGACATTA
ACAAAAAAAAATAGCACAATCGCTTCGATGCCTGTCTCGTTTTCGTCAAG
AAATCAGAAGCTACGAAGGCACAGCTGGGGACTGGCGGCTTGTCGATCCG
CAGCTCACAGAACTGGGAAGCTTGACTGCCGCCGCGAGTAACTGCTGCGT
TCCAGCTACGAAACATGTCCCTGAGAAAGCTCGCTCGCGCGAGGGGGTGT
TGATGAAAAGTGACCCTTTTTCCCTGTCCGCCATATATATTGCCGTTTTT
TTCCCGCGGCGCCCGTGTGTCCGCCACGTTCTCGTCTCTCTCGCGCGCGC
TCCGCCGCCGCGTTTGCAAAAACGAAACAACGAACCGACCGACCGATAAA
AAAAACAAAAGAAGCCGGGAACGGCATCATCTTGCGTGGGGGCGCCGCAA
GAAGGAGCACAGCGAGCCGCCCCCTCGACCTCGGCTCTGTTCCTGTTCTC
CCCTTTCTCTTCTCGGGGGGCCTCGACCTCGCTCACAAGACCAGCGACAG
CAACAAGGGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGACGGCGACGGCG
AGGGCGAGCGCGTGTTCGACCTGTGCCTCACCCGCCGAGAGCGCGATGCC
GAGGTCCTCCGGGTGGTGGAGGCTTTCGGGCTCAACCAAGACCAGGCGCG
CCTTCTCTGGCGGTGCGCGCGCTGGTTCCGCCCTGTTGCGACGGGT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig11751:998..5543- >mRNA_L-elsbetiae_contig11751.1520.1 ID=mRNA_L-elsbetiae_contig11751.1520.1|Name=mRNA_L-elsbetiae_contig11751.1520.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1632bp|location=Sequence derived from alignment at L-elsbetiae_contig11751:998..5543- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGGCAGGGGCGGGGTGGCGACGAAGAAGAAAACGACGGCGAAGAGGA
AGGCGACACCACTGGCAAGGCCAAGGGCGGGGGCGGCAGTGGCTGCGGAA
AGCTGTACCTCAAGCGGGGGCAGGGGCGGGGTGGCGACGAAGAAGAAAAC
GACGGCGAAGAGGAAGGCGACACCACTGGCAAGGCCAAGGGCGGGGGCGG
CAGTGGCTGCGGAAAGCTGTACCTCAAGATTCTATGCTTGACGGAGAGCA
AGGAGGCCGCCTCTTCTTACGGGAAGGGAGACATCTGGGCGCTGAGCGCG
ACCGGCCGTTTTCTGGACGGCAGCAACGATGATGTCGTATTTTGCAGATT
CTATGCTTGACGGAGAGCAAGGAGGCCGCCTCTTCTTACGGGAAGGGAGA
CATCTGGGCGCTGAGCGCGACCGGCCGTTTTCTGGACGGCAGCAACGATG
ATGTCGTATTTTGCAGGAGTCTATGGCATGGGGTTTCTTCTCAGGGGATG
CTGTCCGTCGGCCCCCTCGGGGACGACTCCGAAGCGCTGAGGCTCGAGGC
CATGGCGGGCCGGGGAAGCGGCGGCGGCGGCAGCAGCGCACCCTCCGTCC
ATGCCATTCGCTGCTTCAACTCACAGGAGTCTATGGCATGGGGTTTCTTC
TCAGGGGATGCTGTCCGTCGGCCCCCTCGGGGACGACTCCGAAGCGCTGA
GGCTCGAGGCCATGGCGGGCCGGGGAAGCGGCGGCGGCGGCAGCAGCGCA
CCCTCCGTCCATGCCATTCGCTGCTTCAACTCACAGACGGAGTTGTGCGC
GCTGGACTTGCTGCGGAGCGGCTGTATCCAAGACGGTGACGACGAGGCGG
CGGCGGCGGTGGCGGGCTCGACTCACGGAGTTGTGCGCGCTGGACTTGCT
GCGGAGCGGCTGTATCCAAGACGGTGACGACGAGGCGGCGGCGGCGGTGG
CGGGCTCGACTCAAGCCGGGAACGGCATCATCTTGCGTGGGGGCGCCGCA
AGAAGGAGCACAGCGAGCCGCCCCCTCGACCTCGGCTCTGTTCCTGTTCT
CCCCTTTCTCTTCTCGGGGGGCCTCGACCTCGCTCACAAGACCAGCGACA
GCAACAAGGGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGACGGCGACGGC
GAGGGCGAGCGCGTGTTCGACCTGTGCCTCACCCGCCGAGAGCGCGATGC
CGAGGTCCTCCGGGTGGTGGAGGCTTTCGGGCTCAACCAAGACCAGGCGC
GCCTTCTCTGGCGGTGCGCGCGCTGGTTCCGCCCTGTTGCGACGGGTAAG
CCGGGAACGGCATCATCTTGCGTGGGGGCGCCGCAAGAAGGAGCACAGCG
AGCCGCCCCCTCGACCTCGGCTCTGTTCCTGTTCTCCCCTTTCTCTTCTC
GGGGGGCCTCGACCTCGCTCACAAGACCAGCGACAGCAACAAGGGCAGCA
GCGGCGGCGGCGGCGGCGGCGGCGACGGCGACGGCGAGGGCGAGCGCGTG
TTCGACCTGTGCCTCACCCGCCGAGAGCGCGATGCCGAGGTCCTCCGGGT
GGTGGAGGCTTTCGGGCTCAACCAAGACCAGGCGCGCCTTCTCTGGCGGT
GCGCGCGCTGGTTCCGCCCTGTTGCGACGGGT back to top
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