mRNA_L-elsbetiae_contig1175.1519.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1175.1519.1
Unique NamemRNA_L-elsbetiae_contig1175.1519.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1175.1519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1175contigL-elsbetiae_contig1175:16446..17032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size340
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1175.1519.1prot_L-elsbetiae_contig1175.1519.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1175 16446..17003 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815378.4391787-CDS-L-elsbetiae_contig1175:16445..167251622815378.4391787-CDS-L-elsbetiae_contig1175:16445..16725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1175 16446..16725 -
1691682868.5843718-CDS-L-elsbetiae_contig1175:16445..167251691682868.5843718-CDS-L-elsbetiae_contig1175:16445..16725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1175 16446..16725 -
1622815378.4487448-CDS-L-elsbetiae_contig1175:16974..170031622815378.4487448-CDS-L-elsbetiae_contig1175:16974..17003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1175 16975..17003 -
1691682868.5977569-CDS-L-elsbetiae_contig1175:16974..170031691682868.5977569-CDS-L-elsbetiae_contig1175:16974..17003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1175 16975..17003 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815378.4601316-UTR-L-elsbetiae_contig1175:17003..170321622815378.4601316-UTR-L-elsbetiae_contig1175:17003..17032Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1175 17004..17032 -
1691682868.6087356-UTR-L-elsbetiae_contig1175:17003..170321691682868.6087356-UTR-L-elsbetiae_contig1175:17003..17032Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1175 17004..17032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1175.1519.1

>prot_L-elsbetiae_contig1175.1519.1 ID=prot_L-elsbetiae_contig1175.1519.1|Name=mRNA_L-elsbetiae_contig1175.1519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MSGRGPRNKRHSWSSDEGSADSGSSIETQVDSSGGRRHRKGKHSGLFSSQ
DFTFTHGEERKIRRSLVRKLLSDDGIRLSRLERRLLRADHSRKGSVSVST
FKA
back to top

mRNA from alignment at L-elsbetiae_contig1175:16446..17032-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1175.1519.1 ID=mRNA_L-elsbetiae_contig1175.1519.1|Name=mRNA_L-elsbetiae_contig1175.1519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=587bp|location=Sequence derived from alignment at L-elsbetiae_contig1175:16446..17032- (Laminarionema elsbetiae ELsaHSoW15)
CCTGTGTGCTCAAGCTTCCTGTGGCCGATATGTCGGGCAGAGGTCCAAGG
AACAAGAGGTGGGTAAGCAACAAACAAGGGTTGGGCATTGTCGGGTATCT
CTGCTGCTTGCTTGTGCGGCCAACGGGGAAACTAATCATGCCTGTTCCGA
CGCCCTGGGTGTATCGCCTTTCGCTAGCGACCTACACTGAACGCTGCTGT
ATCGTGTGCCGTGCACAACTATTACTGGTCTAACGCCTATGATAACTTGT
ACACTCTAAGCCTACATGTAAACTGCTGTGGCCCGCGTCCGTCATTTGAA
AACGAAGGCACAGCTGGTCGTCGGACGAAGGCAGCGCCGACAGCGGCAGC
AGCATCGAAACCCAAGTGGACAGTAGCGGTGGGCGAAGGCATCGCAAAGG
AAAACACTCCGGGCTATTCTCCTCTCAAGACTTCACATTCACCCACGGAG
AGGAGCGAAAGATTCGCAGGTCCCTGGTACGCAAGCTCCTTTCCGATGAT
GGGATACGGCTGAGCAGGTTAGAGCGGCGCCTTTTGCGAGCCGATCATTC
AAGAAAGGGTTCTGTCAGCGTCTCCACCTTCAAGGCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1175:16446..17032-

>mRNA_L-elsbetiae_contig1175.1519.1 ID=mRNA_L-elsbetiae_contig1175.1519.1|Name=mRNA_L-elsbetiae_contig1175.1519.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig1175:16446..17032- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGGCAGAGGTCCAAGGAACAAGAGATGTCGGGCAGAGGTCCAAGG
AACAAGAGGCACAGCTGGTCGTCGGACGAAGGCAGCGCCGACAGCGGCAG
CAGCATCGAAACCCAAGTGGACAGTAGCGGTGGGCGAAGGCATCGCAAAG
GAAAACACTCCGGGCTATTCTCCTCTCAAGACTTCACATTCACCCACGGA
GAGGAGCGAAAGATTCGCAGGTCCCTGGTACGCAAGCTCCTTTCCGATGA
TGGGATACGGCTGAGCAGGTTAGAGCGGCGCCTTTTGCGAGCCGATCATT
CAAGAAAGGGTTCTGTCAGCGTCTCCACCTTCAAGGCTGCACAGCTGGTC
GTCGGACGAAGGCAGCGCCGACAGCGGCAGCAGCATCGAAACCCAAGTGG
ACAGTAGCGGTGGGCGAAGGCATCGCAAAGGAAAACACTCCGGGCTATTC
TCCTCTCAAGACTTCACATTCACCCACGGAGAGGAGCGAAAGATTCGCAG
GTCCCTGGTACGCAAGCTCCTTTCCGATGATGGGATACGGCTGAGCAGGT
TAGAGCGGCGCCTTTTGCGAGCCGATCATTCAAGAAAGGGTTCTGTCAGC
GTCTCCACCTTCAAGGCT
back to top