mRNA_L-elsbetiae_contig11748.1515.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11748.1515.1
Unique NamemRNA_L-elsbetiae_contig11748.1515.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11748.1515.1 vs. uniprot
Match: A0A6H5KU56_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU56_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.810e-17
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:  121 QHHKLPTGTTKLDTQNMPQRGEETRRFVLPLQEGKSIGLELDFSVEMSTGSGIRVSRIDGGGAAEAGGLRQEDRLIIVGGVDVRGAAHVVIREMLMRRTETIRLEFERP 447
            + H+ PT        N+       +R  + L+E K IGLELDFS E +TG  +RVS ++ GGAAE+ G+ QEDRLI V G DVR    V  REML+RR +T  L FERP
Sbjct:    6 KRHRKPTTQQPQPAPNI------AKRIHVSLEEDKPIGLELDFSAEATTG--VRVSHVNAGGAAESEGVEQEDRLIHVSGQDVREMGLVETREMLLRRAKTTLLVFERP 106
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BLAST of mRNA_L-elsbetiae_contig11748.1515.1 vs. uniprot
Match: D8LSG0_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG0_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.730e-16
Identity = 53/109 (48.62%), Postives = 66/109 (60.55%), Query Frame = 1 
Query:  121 QHHKLPTGTTKLDTQNMPQRGEETRRFVLPLQEGKSIGLELDFSVEMSTGSGIRVSRIDGGGAAEAGGLRQEDRLIIVGGVDVRGAAHVVIREMLMRRTETIRLEFERP 447
            + H+ PT      TQ         +R  + L+E K IGLELDFS E +TG  +RVS ++ GGAAE+ G+ QEDRLI V G DVR    V  REML+RR +T  L FERP
Sbjct:    6 KRHRKPT------TQQPQPAPNVAKRIHVSLEEDKPIGLELDFSAEATTG--VRVSHVNAGGAAESEGVEQEDRLIHVSGQDVREMGLVETREMLLRRAKTTLLVFERP 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11748.1515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU56_9PHAE6.810e-1747.71PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LSG0_ECTSI2.730e-1648.62PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11748contigL-elsbetiae_contig11748:2910..4638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size539
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11748.1515.1prot_L-elsbetiae_contig11748.1515.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11748 2910..4470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815378.2504203-CDS-L-elsbetiae_contig11748:2909..30901622815378.2504203-CDS-L-elsbetiae_contig11748:2909..3090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11748 2910..3090 -
1691682868.4798977-CDS-L-elsbetiae_contig11748:2909..30901691682868.4798977-CDS-L-elsbetiae_contig11748:2909..3090Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11748 2910..3090 -
1622815378.2644424-CDS-L-elsbetiae_contig11748:3676..37741622815378.2644424-CDS-L-elsbetiae_contig11748:3676..3774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11748 3677..3774 -
1691682868.4908872-CDS-L-elsbetiae_contig11748:3676..37741691682868.4908872-CDS-L-elsbetiae_contig11748:3676..3774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11748 3677..3774 -
1622815378.2757373-CDS-L-elsbetiae_contig11748:4380..44701622815378.2757373-CDS-L-elsbetiae_contig11748:4380..4470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11748 4381..4470 -
1691682868.5033545-CDS-L-elsbetiae_contig11748:4380..44701691682868.5033545-CDS-L-elsbetiae_contig11748:4380..4470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11748 4381..4470 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815378.2889745-UTR-L-elsbetiae_contig11748:4470..46381622815378.2889745-UTR-L-elsbetiae_contig11748:4470..4638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11748 4471..4638 -
1691682868.5127015-UTR-L-elsbetiae_contig11748:4470..46381691682868.5127015-UTR-L-elsbetiae_contig11748:4470..4638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11748 4471..4638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11748.1515.1

>prot_L-elsbetiae_contig11748.1515.1 ID=prot_L-elsbetiae_contig11748.1515.1|Name=mRNA_L-elsbetiae_contig11748.1515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MPQRGEETRRFVLPLQEGKSIGLELDFSVEMSTGSGIRVSRIDGGGAAEA
GGLRQEDRLIIVGGVDVRGAAHVVIREMLMRRTETIRLEFERPPLPPPRP
PPQPQESDSVASRPEIRTSSNSS
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mRNA from alignment at L-elsbetiae_contig11748:2910..4638-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11748.1515.1 ID=mRNA_L-elsbetiae_contig11748.1515.1|Name=mRNA_L-elsbetiae_contig11748.1515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1729bp|location=Sequence derived from alignment at L-elsbetiae_contig11748:2910..4638- (Laminarionema elsbetiae ELsaHSoW15)
GGGCATGAGCAGGAAGTTGGTTGGTAGGACAGCGAGCAAGTGTATGATGT
TTCTTTGCGCAGGAATATAGGATTAGTGGCCCTCTTACCTCGACGGATGG
TCTAAGTGATAGTTGGCCATCAGCACCACAAGCTGCCCACCGGGACCACA
AAATTAGATACACAAAACATGCCGCAACGAGGGGAGGAGACTAGGCGGTT
TGTCTTGCCTCTTCAAGAGGGCAAATCAATTGGGCTGGAGCTGGACTTTA
GTGTTGAGGTGAGGCGGGGTATTTCCGTTCCGTTGATGAATCCAGTCACT
CCCTTCGTCAAGTATTTATCGGGAAAACCCGGAGCCAGCGACCCCTGGAA
AACAAACCGTAAAAACAGCACTGCTGTTGGTGGCCACTCTGCTGGATGTT
CAGCACACATGGCAGAGTGCATCTTACCCAGATTGCATTTCCCCAGACAT
ACATATCGCTCGGCGATAGTGCCAGTTGTGGTGAAATCGCCTACAATACA
ACACTACTGCTGCCGCAGAACAATGCATGTGTGTAGATATGTAGATCGGA
GAGAGAAGACATCACGTGGAAGACATGTTCCACTTCTTGGCCCAAGTGCT
CTCGAGAACGGCGCCCCCGGCGGGAGAGATTGGGCCCTTGCCGCGGCCAC
CTAAAACCAGAGCTGTTATATTCCACGGAAAGTCCAACAACATCTCTGGT
TGGGCAAGTCTCCAGCTTTTCTTCTTGTCGCCTTCTCAGCGTACGGACGA
TATTTATGTAGGACACGCTGCTTTGGGGTGGACCAAAAGGCCCTGTTGGC
GAATATGAAAGGGCAAACCGGATCTAATTCCTTGTTTGCGTGCGTGAATG
CTCGGCGGCGACAGATGTCCACAGGGAGCGGGATCCGCGTCTCCCGCATC
GACGGCGGCGGCGCAGCGGAGGCGGGGGGGTTGCGCCAAGAGGATCGGCT
CATCATCGTCGGGTAAGATACATATGTACGTATGTAGAAAACATGAGATG
CTGAAGAAAGTCTATTTAGTTGCCGACACGGTACTGCTGTAGAGAGGACG
AGATACGTGGGGGGGAGAAAGGAGAAAGGAGAGTGGAAGAAGAGCTGTTC
TTGTTCCGATATCTCCGGCGCCAGGGGACCCGATGTATGATCCTTTTCGC
TCTTGACTTGGCTGACTTATAGAGAAAGCATGGGAGGGAGGGATTGACGA
AGCGCGTGCGCGCGAGCCCGGCCTGTTCGGTAGTGGATCCCAAGGCAACA
GCGGGAGGCTACCTCTTCGTTGGTATCCTACATATGATTCAGGGAGAGAG
TCGCTATTGTTGCATGTTCCTCACCCTTGCCTCCCCATGTATTGCTCCAT
GGAGGATGTGCTGCTCCATCCCCGCGGATAAGCGCGGGACGTGGAGATCG
GTACTTGAAAGATTACCAGCAGAGCGGTCTCTGACGGCGTTTTTTTTTCG
AGAGCTAACTTTCTCAACCGTGGAAACGACGACACTCAATGCACCACCAC
ATGCACGTCGTGAGCGGTGCTGATGATGGACGATGTGCTTGGTTGCAGGG
GTGTGGATGTCCGAGGGGCGGCGCACGTTGTGATCCGCGAGATGCTCATG
AGGCGTACTGAAACCATCCGGCTCGAGTTCGAGCGGCCGCCGCTGCCGCC
GCCGCGACCACCACCACAACCCCAAGAGAGCGACAGCGTTGCCTCCAGAC
CCGAGATACGCACCTCCAGCAACAGTAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11748:2910..4638-

>mRNA_L-elsbetiae_contig11748.1515.1 ID=mRNA_L-elsbetiae_contig11748.1515.1|Name=mRNA_L-elsbetiae_contig11748.1515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig11748:2910..4638- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCAACGAGGGGAGGAGACTAGGCGGTTTGTCTTGCCTCTTCAAGA
GGGCAAATCAATTGGGCTGGAGCTGGACTTTAGTGTTGAGATGCCGCAAC
GAGGGGAGGAGACTAGGCGGTTTGTCTTGCCTCTTCAAGAGGGCAAATCA
ATTGGGCTGGAGCTGGACTTTAGTGTTGAGATGTCCACAGGGAGCGGGAT
CCGCGTCTCCCGCATCGACGGCGGCGGCGCAGCGGAGGCGGGGGGGTTGC
GCCAAGAGGATCGGCTCATCATCGTCGGATGTCCACAGGGAGCGGGATCC
GCGTCTCCCGCATCGACGGCGGCGGCGCAGCGGAGGCGGGGGGGTTGCGC
CAAGAGGATCGGCTCATCATCGTCGGGGGTGTGGATGTCCGAGGGGCGGC
GCACGTTGTGATCCGCGAGATGCTCATGAGGCGTACTGAAACCATCCGGC
TCGAGTTCGAGCGGCCGCCGCTGCCGCCGCCGCGACCACCACCACAACCC
CAAGAGAGCGACAGCGTTGCCTCCAGACCCGAGATACGCACCTCCAGCAA
CAGTAGTGGGTGTGGATGTCCGAGGGGCGGCGCACGTTGTGATCCGCGAG
ATGCTCATGAGGCGTACTGAAACCATCCGGCTCGAGTTCGAGCGGCCGCC
GCTGCCGCCGCCGCGACCACCACCACAACCCCAAGAGAGCGACAGCGTTG
CCTCCAGACCCGAGATACGCACCTCCAGCAACAGTAGT
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