mRNA_L-elsbetiae_contig11748.1514.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11748.1514.1
Unique NamemRNA_L-elsbetiae_contig11748.1514.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11748.1514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11748contigL-elsbetiae_contig11748:1720..2807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size347
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815378.2100508-CDS-L-elsbetiae_contig11748:1721..17811622815378.2100508-CDS-L-elsbetiae_contig11748:1721..1781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11748 1722..1781 -
1691682868.458516-CDS-L-elsbetiae_contig11748:1721..17811691682868.458516-CDS-L-elsbetiae_contig11748:1721..1781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11748 1722..1781 -
1622815378.219958-CDS-L-elsbetiae_contig11748:2522..28071622815378.219958-CDS-L-elsbetiae_contig11748:2522..2807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11748 2523..2807 -
1691682868.4681437-CDS-L-elsbetiae_contig11748:2522..28071691682868.4681437-CDS-L-elsbetiae_contig11748:2522..2807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11748 2523..2807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11748.1514.1prot_L-elsbetiae_contig11748.1514.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11748 1722..2807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11748.1514.1

>prot_L-elsbetiae_contig11748.1514.1 ID=prot_L-elsbetiae_contig11748.1514.1|Name=mRNA_L-elsbetiae_contig11748.1514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
AAGTARQSKVSVASSAARNRRRTGREPDRRDGSPSLRKHQLYRRVGSERA
ACTAGAAAAALATLAETKEPPAATSTTKPVPIRKRRRRVSSAAAKGPVAL
PPQAVHAGGGDMLEQ
back to top

mRNA from alignment at L-elsbetiae_contig11748:1720..2807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11748.1514.1 ID=mRNA_L-elsbetiae_contig11748.1514.1|Name=mRNA_L-elsbetiae_contig11748.1514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1088bp|location=Sequence derived from alignment at L-elsbetiae_contig11748:1720..2807- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCGGGAACAGCGCGGCAGAGCAAGGTCTCCGTTGCTTCTTCTGCTGC
GAGGAACCGAAGGCGGACGGGGAGAGAGCCGGATCGACGGGATGGTAGTC
CCTCCCTCCGGAAGCACCAGCTGTACCGTAGGGTCGGCAGCGAGCGGGCT
GCTTGTACTGCCGGGGCGGCGGCGGCGGCCCTGGCCACACTGGCGGAGAC
GAAAGAGCCTCCGGCGGCAACGAGCACCACCAAGCCTGTTCCCATTCGTA
AGCGGCGGCGCCGTGTGTCGTCGGCCGCGGCCAAGGTGCGGCACTCTGGT
CTGTTGCCTGCCTGCTGGTTTATTAGTGTTGCGTGCGTGTGGTTTGCCTC
TGCGCAGTGCAGCATCATCGACGAGGAAGCAGTCTCCTGTCGTGTTCGAA
TGGTCGGCTGTCTGGCCCCTTGCACTCTCTTCTTTTGTGTGTCTTGCTTG
TTGTTTTGGTTTTGGTTTTCCTTCGGATGGAGAGAAGGGGCGGTTGGTTG
CCGCTACAATACGACGTCCTCTAACCCAGGAAACGGCCTTGTTCTTCTGC
CGTTCCTTTTTTTTTTTTTTCCTTGACATGTATTTCCGTGCTCGATGGGC
TCGTTGCTACTAGGGCATCTTGCCAGAGTACTGAACCATGGTCACACAGA
AGGGTTCCTCTCCCCGAGGCCCCCACTCCCACCTTCTGCGGTGCTTGTCT
AAGGTTTTGTGGCGAGAAGGGTTCAGCCGTCCCTTTTCCCTCGTCGACGG
TCAGGTCGAAGTTTGGGTACACACGCTAAGCGCTATCCACCGACAGGGAC
GGAAGCGAGAAAAAAAAACTCACTTCGCAAGGAAAAGTCGCTCCCGCCGG
GACTCGAACCCCATGACCTGCCTGCTAGAAAGTGTTCAGGGGTAAAAACT
GGACCACCGGGGCCACCGGGGCCATCGGCGTCCCTGCAGAGGCCTTATTC
GCTGGAATGGTGTATGACCGCTGCTTTCTTTCGCTGCGACAACGGCTGCC
TGATTGTTTGTTCCCCGCTTCTCCAGGGCCCGGTAGCGCTACCGCCGCAG
GCCGTCCATGCCGGCGGCGGCGACATGCTCGAGCAGTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11748:1720..2807-

>mRNA_L-elsbetiae_contig11748.1514.1 ID=mRNA_L-elsbetiae_contig11748.1514.1|Name=mRNA_L-elsbetiae_contig11748.1514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig11748:1720..2807- (Laminarionema elsbetiae ELsaHSoW15)
GCCGCGGGAACAGCGCGGCAGAGCAAGGTCTCCGTTGCTTCTTCTGCTGC
GAGGAACCGAAGGCGGACGGGGAGAGAGCCGGATCGACGGGATGGTAGTC
CCTCCCTCCGGAAGCACCAGCTGTACCGTAGGGTCGGCAGCGAGCGGGCT
GCTTGTACTGCCGGGGCGGCGGCGGCGGCCCTGGCCACACTGGCGGAGAC
GAAAGAGCCTCCGGCGGCAACGAGCACCACCAAGCCTGTTCCCATTCGTA
AGCGGCGGCGCCGTGTGTCGTCGGCCGCGGCCAAGGCCGCGGGAACAGCG
CGGCAGAGCAAGGTCTCCGTTGCTTCTTCTGCTGCGAGGAACCGAAGGCG
GACGGGGAGAGAGCCGGATCGACGGGATGGTAGTCCCTCCCTCCGGAAGC
ACCAGCTGTACCGTAGGGTCGGCAGCGAGCGGGCTGCTTGTACTGCCGGG
GCGGCGGCGGCGGCCCTGGCCACACTGGCGGAGACGAAAGAGCCTCCGGC
GGCAACGAGCACCACCAAGCCTGTTCCCATTCGTAAGCGGCGGCGCCGTG
TGTCGTCGGCCGCGGCCAAGGGCCCGGTAGCGCTACCGCCGCAGGCCGTC
CATGCCGGCGGCGGCGACATGCTCGAGCAGGGCCCGGTAGCGCTACCGCC
GCAGGCCGTCCATGCCGGCGGCGGCGACATGCTCGAGCAG
back to top