mRNA_L-elsbetiae_contig11744.1513.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11744.1513.1
Unique NamemRNA_L-elsbetiae_contig11744.1513.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11744.1513.1 vs. uniprot
Match: A0A6H5KLQ4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ4_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 2.790e-36
Identity = 151/385 (39.22%), Postives = 172/385 (44.68%), Query Frame = 1 
Query:   43 MLALRSSHRGVRLHTFEPEDRAYTSTPTKIGGHALDHVV-GVTLEWSRALNNNKS------------NAWGGRAF-----------VVGEGGCGAACSTTLEPRMGRFGGLSFAV--------HSPRRYLPEPPPCPVLMPPLYPTLAVLPPDTLAPRSVTADADVSWQWHRRLEYGP------------EWVDDNRNEGGEVEAVAPLDGGSTSSTNPASIVAASAGASGGAAPYRNMATS-ATGHSGALMAILLSKLA----NSGYSAPSAGEAPPEAAVAA--------------AAPSPSRAELLHRSV------DSIARGLGGSAVGPDAADPIANGGGSWAWKARVDQTPHYSKLRRYHFVRELGSGSHGTILLVRKRP 990
            +LALR SHRGVRLHTFEPEDR YTSTPTKIGGH LDHV  G T+   + L N  S            N  G +A               EG   AA STTL+  MGRFGGLS  +         +P R+             LYPTLA  PPDTLA R   A    S Q                     +W     +EG                        A       A PYR+MAT+ A GHSGAL+AILLS+LA      GY+    G+ P  AA AA              A P  + A +    V      DS AR  G                 SWAWKARVD  P  S+L+RY FVRELGSGSHGT+LLVRKRP
Sbjct:    3 LLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTV--IQQLRNKSSASVLTCSSGSSRNGQGQQASSRDSGDGEHEPAAMEGRPAAAFSTTLDTSMGRFGGLSAGLVLRLGAADFAPPRHR------------LYPTLAEFPPDTLALRR-DASGGFSCQXXXXXXXXXXXXXXXXXXXXXKWHAGESDEGEPXXXXXXXXXXXXXXXXXXXXDDAREEIR--AVPYRDMATTVAAGHSGALVAILLSRLAAVNPGDGYT----GDTPAAAAAAAGGLVRDNSRVDLGVAQPGSTTALIATDEVPRRPPADSAAREHGXXXXXXXXXXXXX----SWAWKARVDPLPVSSRLKRYDFVRELGSGSHGTLLLVRKRP 362
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BLAST of mRNA_L-elsbetiae_contig11744.1513.1 vs. uniprot
Match: D8LSH9_ECTSI (Protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH9_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 7.380e-14
Identity = 63/139 (45.32%), Postives = 72/139 (51.80%), Query Frame = 1 
Query:  631 TSATGHSGALMAILLSKLANSGYSAPSAGEAPPEAAVAAAAPSPSRAELLHRSVDSIARGLG--GSAVGPDAADPIAN-----------------GGGSWAWKARVDQTPHYSKLRRYHFVRELGSGSHGTILLVRKRP 990
            T+ATGHSGALMAILLS+LA         G+ P       AA        L R   S+  G+   GSA    A D +                      SWAWKARVD  P  S+L+RY FVRELGSGSHGT+LLVRKRP
Sbjct:    4 TAATGHSGALMAILLSRLAAVNPGDAYTGDTP-------AAAXXXXXGGLARDNSSVGLGVAQPGSATALIATDEVLRRPPXXXXXXXXXXXXXXXXSSWAWKARVDSLPVSSRLKRYDFVRELGSGSHGTLLLVRKRP 135
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11744.1513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLQ4_9PHAE2.790e-3639.22Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LSH9_ECTSI7.380e-1445.32Protein kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11744contigL-elsbetiae_contig11744:3877..5040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1164
Cds size1164
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815378.174627-CDS-L-elsbetiae_contig11744:3876..50401622815378.174627-CDS-L-elsbetiae_contig11744:3876..5040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11744 3877..5040 +
1691682868.4491067-CDS-L-elsbetiae_contig11744:3876..50401691682868.4491067-CDS-L-elsbetiae_contig11744:3876..5040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11744 3877..5040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11744.1513.1prot_L-elsbetiae_contig11744.1513.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11744 3877..5040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11744.1513.1

>prot_L-elsbetiae_contig11744.1513.1 ID=prot_L-elsbetiae_contig11744.1513.1|Name=mRNA_L-elsbetiae_contig11744.1513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=388bp
FEESKDVSLACQLIMLALRSSHRGVRLHTFEPEDRAYTSTPTKIGGHALD
HVVGVTLEWSRALNNNKSNAWGGRAFVVGEGGCGAACSTTLEPRMGRFGG
LSFAVHSPRRYLPEPPPCPVLMPPLYPTLAVLPPDTLAPRSVTADADVSW
QWHRRLEYGPEWVDDNRNEGGEVEAVAPLDGGSTSSTNPASIVAASAGAS
GGAAPYRNMATSATGHSGALMAILLSKLANSGYSAPSAGEAPPEAAVAAA
APSPSRAELLHRSVDSIARGLGGSAVGPDAADPIANGGGSWAWKARVDQT
PHYSKLRRYHFVRELGSGSHGTILLVRKRPAANDHAPSSGGGGGGGGLVF
DNYCKTSSGGGPRRRSGTGSDDHRRCCVRSSGRDAGGG
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mRNA from alignment at L-elsbetiae_contig11744:3877..5040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11744.1513.1 ID=mRNA_L-elsbetiae_contig11744.1513.1|Name=mRNA_L-elsbetiae_contig11744.1513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig11744:3877..5040+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGAAGAGAGCAAAGATGTATCACTAGCGTGTCAATTAATCATGTTAGC
GCTGAGATCGAGCCATCGGGGCGTGCGGCTGCACACTTTCGAGCCAGAGG
ACCGCGCGTACACGTCGACACCAACAAAAATCGGAGGGCATGCTCTCGAT
CACGTGGTCGGCGTAACCTTGGAGTGGTCGCGCGCTCTGAACAACAACAA
GAGCAACGCGTGGGGTGGCCGAGCGTTTGTCGTAGGGGAAGGAGGGTGCG
GTGCCGCGTGTTCTACGACGCTCGAGCCCAGAATGGGCAGGTTTGGGGGC
CTTAGCTTTGCGGTGCATTCTCCGCGACGTTACCTCCCCGAGCCACCACC
CTGCCCCGTGCTGATGCCCCCGCTTTACCCGACCCTTGCCGTGCTCCCAC
CGGACACGCTTGCACCAAGGAGCGTCACGGCGGATGCTGATGTTTCCTGG
CAGTGGCATCGGCGCCTGGAGTACGGCCCCGAATGGGTGGACGATAACCG
CAACGAGGGCGGCGAGGTGGAGGCGGTTGCGCCGCTAGACGGCGGTAGTA
CGAGTAGCACCAATCCTGCGAGCATCGTAGCGGCGAGTGCGGGAGCTAGC
GGCGGGGCGGCGCCCTACCGAAACATGGCCACCTCTGCCACGGGGCACAG
CGGCGCGCTCATGGCCATCCTCCTTTCCAAGCTCGCCAACAGCGGCTACA
GCGCTCCCTCCGCGGGCGAGGCACCGCCAGAAGCGGCAGTGGCAGCGGCG
GCGCCGTCGCCGTCGCGGGCCGAGCTACTCCACCGCTCTGTCGATAGCAT
TGCCCGGGGCCTGGGCGGTAGCGCCGTCGGTCCTGACGCTGCGGACCCGA
TTGCCAACGGCGGTGGCAGTTGGGCGTGGAAGGCGCGGGTCGACCAGACG
CCGCACTACTCCAAGCTCAGGAGGTACCACTTCGTCCGCGAGCTGGGCAG
TGGCAGCCATGGTACCATCTTGCTCGTGAGGAAGAGGCCGGCAGCTAACG
ACCACGCCCCCAGTAGCGGCGGCGGCGGCGGTGGCGGCGGCCTGGTTTTC
GACAATTACTGCAAAACAAGTAGCGGTGGCGGTCCGAGGAGAAGGAGCGG
TACCGGCAGCGACGACCACCGCCGCTGCTGTGTAAGAAGCAGCGGCAGAG
ACGCTGGTGGTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11744:3877..5040+

>mRNA_L-elsbetiae_contig11744.1513.1 ID=mRNA_L-elsbetiae_contig11744.1513.1|Name=mRNA_L-elsbetiae_contig11744.1513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2328bp|location=Sequence derived from alignment at L-elsbetiae_contig11744:3877..5040+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGAAGAGAGCAAAGATGTATCACTAGCGTGTCAATTAATCATGTTAGC
GCTGAGATCGAGCCATCGGGGCGTGCGGCTGCACACTTTCGAGCCAGAGG
ACCGCGCGTACACGTCGACACCAACAAAAATCGGAGGGCATGCTCTCGAT
CACGTGGTCGGCGTAACCTTGGAGTGGTCGCGCGCTCTGAACAACAACAA
GAGCAACGCGTGGGGTGGCCGAGCGTTTGTCGTAGGGGAAGGAGGGTGCG
GTGCCGCGTGTTCTACGACGCTCGAGCCCAGAATGGGCAGGTTTGGGGGC
CTTAGCTTTGCGGTGCATTCTCCGCGACGTTACCTCCCCGAGCCACCACC
CTGCCCCGTGCTGATGCCCCCGCTTTACCCGACCCTTGCCGTGCTCCCAC
CGGACACGCTTGCACCAAGGAGCGTCACGGCGGATGCTGATGTTTCCTGG
CAGTGGCATCGGCGCCTGGAGTACGGCCCCGAATGGGTGGACGATAACCG
CAACGAGGGCGGCGAGGTGGAGGCGGTTGCGCCGCTAGACGGCGGTAGTA
CGAGTAGCACCAATCCTGCGAGCATCGTAGCGGCGAGTGCGGGAGCTAGC
GGCGGGGCGGCGCCCTACCGAAACATGGCCACCTCTGCCACGGGGCACAG
CGGCGCGCTCATGGCCATCCTCCTTTCCAAGCTCGCCAACAGCGGCTACA
GCGCTCCCTCCGCGGGCGAGGCACCGCCAGAAGCGGCAGTGGCAGCGGCG
GCGCCGTCGCCGTCGCGGGCCGAGCTACTCCACCGCTCTGTCGATAGCAT
TGCCCGGGGCCTGGGCGGTAGCGCCGTCGGTCCTGACGCTGCGGACCCGA
TTGCCAACGGCGGTGGCAGTTGGGCGTGGAAGGCGCGGGTCGACCAGACG
CCGCACTACTCCAAGCTCAGGAGGTACCACTTCGTCCGCGAGCTGGGCAG
TGGCAGCCATGGTACCATCTTGCTCGTGAGGAAGAGGCCGGCAGCTAACG
ACCACGCCCCCAGTAGCGGCGGCGGCGGCGGTGGCGGCGGCCTGGTTTTC
GACAATTACTGCAAAACAAGTAGCGGTGGCGGTCCGAGGAGAAGGAGCGG
TACCGGCAGCGACGACCACCGCCGCTGCTGTGTAAGAAGCAGCGGCAGAG
ACGCTGGTGGTGGCTTTGAAGAGAGCAAAGATGTATCACTAGCGTGTCAA
TTAATCATGTTAGCGCTGAGATCGAGCCATCGGGGCGTGCGGCTGCACAC
TTTCGAGCCAGAGGACCGCGCGTACACGTCGACACCAACAAAAATCGGAG
GGCATGCTCTCGATCACGTGGTCGGCGTAACCTTGGAGTGGTCGCGCGCT
CTGAACAACAACAAGAGCAACGCGTGGGGTGGCCGAGCGTTTGTCGTAGG
GGAAGGAGGGTGCGGTGCCGCGTGTTCTACGACGCTCGAGCCCAGAATGG
GCAGGTTTGGGGGCCTTAGCTTTGCGGTGCATTCTCCGCGACGTTACCTC
CCCGAGCCACCACCCTGCCCCGTGCTGATGCCCCCGCTTTACCCGACCCT
TGCCGTGCTCCCACCGGACACGCTTGCACCAAGGAGCGTCACGGCGGATG
CTGATGTTTCCTGGCAGTGGCATCGGCGCCTGGAGTACGGCCCCGAATGG
GTGGACGATAACCGCAACGAGGGCGGCGAGGTGGAGGCGGTTGCGCCGCT
AGACGGCGGTAGTACGAGTAGCACCAATCCTGCGAGCATCGTAGCGGCGA
GTGCGGGAGCTAGCGGCGGGGCGGCGCCCTACCGAAACATGGCCACCTCT
GCCACGGGGCACAGCGGCGCGCTCATGGCCATCCTCCTTTCCAAGCTCGC
CAACAGCGGCTACAGCGCTCCCTCCGCGGGCGAGGCACCGCCAGAAGCGG
CAGTGGCAGCGGCGGCGCCGTCGCCGTCGCGGGCCGAGCTACTCCACCGC
TCTGTCGATAGCATTGCCCGGGGCCTGGGCGGTAGCGCCGTCGGTCCTGA
CGCTGCGGACCCGATTGCCAACGGCGGTGGCAGTTGGGCGTGGAAGGCGC
GGGTCGACCAGACGCCGCACTACTCCAAGCTCAGGAGGTACCACTTCGTC
CGCGAGCTGGGCAGTGGCAGCCATGGTACCATCTTGCTCGTGAGGAAGAG
GCCGGCAGCTAACGACCACGCCCCCAGTAGCGGCGGCGGCGGCGGTGGCG
GCGGCCTGGTTTTCGACAATTACTGCAAAACAAGTAGCGGTGGCGGTCCG
AGGAGAAGGAGCGGTACCGGCAGCGACGACCACCGCCGCTGCTGTGTAAG
AAGCAGCGGCAGAGACGCTGGTGGTGGC
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