mRNA_L-elsbetiae_contig11729.1505.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11729.1505.1
Unique NamemRNA_L-elsbetiae_contig11729.1505.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11729.1505.1 vs. uniprot
Match: D8LFV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFV7_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.320e-40
Identity = 124/153 (81.05%), Postives = 132/153 (86.27%), Query Frame = 1 
Query:   16 DRRDYNMHRLAREERLRGKKXXXXXXXXETEREKAPGQDFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILEERSRRKDKKGHGGRRSNSNNSLAGDANGXXXXXXXXXXXXXXXXXXXXXXXGRKKGDLSLLVNKLKTRGLARNG 474
            DRRDY+MHRLAREE+L+GK XXXXXXXX   REKAPGQDFRVDVADERFAA+LEGDTRFGIDRTDSSFKDTEGMRSILEER+RRK KK    RR++ +   AG    XXXXXXXXXXXXXXXXXXXXX  G KKGDLSLLVNKLKTRGLA NG
Sbjct:  766 DRRDYDMHRLAREEKLKGKXXXXXXXXXXAAREKAPGQDFRVDVADERFAALLEGDTRFGIDRTDSSFKDTEGMRSILEERTRRKGKK----RRADRDGPDAGXXXXXXXXXXXXXXXXXXXXXXXXXLCGGKKGDLSLLVNKLKTRGLAENG 914
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BLAST of mRNA_L-elsbetiae_contig11729.1505.1 vs. uniprot
Match: A0A7S1FMP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMP2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.310e-14
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:   10 EEDRRDYNMHRLAREER-----LRGKKXXXXXXXXETEREKAPGQDFRVDVADERFAAVLEG-DTRFGIDRTDSSFKDTEGMRSILEERSRRK 270
            EED RDY+M  L + ER     LRGK+ XXXXXXX   R    G +F+VDVAD+RFAAVL+G D RFGI RTD +FKDTEGMR +L E++RR+
Sbjct:   14 EEDARDYDMRGLRKAERDAAKALRGKRLXXXXXXXXEVR----GGEFQVDVADDRFAAVLDGEDARFGITRTDPAFKDTEGMRKVLAEQNRRR 102
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BLAST of mRNA_L-elsbetiae_contig11729.1505.1 vs. uniprot
Match: A0A1Z5KDP7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDP7_FISSO)

HSP 1 Score: 76.6 bits (187), Expect = 2.510e-13
Identity = 50/93 (53.76%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    7 DEEDRRDYNMHRLAREERLRGKKXXXXXXXXETEREK-APGQDFRVDVADERFAAVLEG-DTRFGIDRTDSSFKDTEGMRSILEERSRRKDKK 279
            D+++ +DYNM  L R ER +GKK        E  R K   G DF+VDV DERF AVL+G D RFGIDRTD +FK+T  MR IL E+SRR+  K
Sbjct:  638 DDDEHKDYNMKDLERLERNKGKKLTGSRKRKEELRAKNTVGTDFKVDVEDERFKAVLDGQDGRFGIDRTDPNFKETPAMREILAEQSRRRQAK 730
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BLAST of mRNA_L-elsbetiae_contig11729.1505.1 vs. uniprot
Match: A0A4D9D496_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D496_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.530e-13
Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    7 DEEDRRDYNMHRLAREERLRGKKXXXXXXXXETEREKA-PGQDFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILEERSRRK 270
            +EE RRD++M  L R ERL+GKKXXXXXXXX      A PGQDFRVD +D RFAA+ EGD R+GI+ T   +K+TEGM  +L E+S+R+
Sbjct:  689 EEEGRRDFDMRALERTERLKGKKXXXXXXXXXXXXXXAVPGQDFRVDTSDSRFAALFEGDARYGIETTSKEYKETEGMVRVLREQSKRR 777
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BLAST of mRNA_L-elsbetiae_contig11729.1505.1 vs. uniprot
Match: I2CPY8_NANGC (NUC153 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPY8_NANGC)

HSP 1 Score: 73.6 bits (179), Expect = 2.600e-13
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:    7 DEEDRRDYNMHRLAREERLRGKKXXXXXXXXETEREKA-PGQDFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILEERSRRK 270
            +EE RRD++M  L R E+L+GK XXXXXXXX      A PGQDFRVD +D RFAA+ EGD R+GI+ T   +K+TEGM  IL E+S+R+
Sbjct:   78 EEEGRRDFDMRALERTEKLKGKXXXXXXXXXXXXXXXAVPGQDFRVDTSDSRFAALFEGDARYGIETTSKEYKETEGMVRILREQSKRR 166
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BLAST of mRNA_L-elsbetiae_contig11729.1505.1 vs. uniprot
Match: A0A835YR83_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR83_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.840e-10
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    7 DEEDRRDYNMHRLAREERLRGKKXXXXXXXXETEREKAPGQDFRVDVADERFAAVLEGDTRF 192
            DEED R+++M  L REE+++GKK        E  R++APGQ F VDV D+RFAAVLEGD+RF
Sbjct:  617 DEEDERNFDMRALMREEKVKGKKLRGKRKRKEEARDRAPGQGFNVDVKDDRFAAVLEGDSRF 678
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BLAST of mRNA_L-elsbetiae_contig11729.1505.1 vs. uniprot
Match: B7GAK3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAK3_PHATC)

HSP 1 Score: 65.1 bits (157), Expect = 2.560e-9
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:   22 RDYNMHRLAREERLRGKKXXXXXXXXETE-REKAPGQDFRVDVADERFAAVLEG-DTRFGIDRTDSSFKDTEGMRSILEERS-RRKDKK 279
            RDY+M  L R E+ + KK        E        G +F VD +D+RF AVL+G D RFGIDRTD SFK+T  MR IL+E++ RRKDK+
Sbjct:  566 RDYDMRGLQRLEKNKDKKFTGSRKRNEVALAANVTGTEFHVDTSDQRFKAVLDGTDDRFGIDRTDPSFKETPAMREILKEQTLRRKDKR 654
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BLAST of mRNA_L-elsbetiae_contig11729.1505.1 vs. uniprot
Match: A0A1E7F590_9STRA (NUC153 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F590_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.540e-9
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    7 DEEDRRDYNMHRLAREERLRGKKXXXXXXXXETE-REKAPGQDFRVDVADERFAAVLEG-DTRFGIDRTDSSFKDTEGMRSILEERS-RRKDKK 279
            ++E+ RDY++  + R E+ +GKK        E +      G  F+VD  D RF AVL+G D RFGID+TD SFKDT  MR I+ E++ RRK+K+
Sbjct:  636 EDEEARDYDIRGIQRMEKNKGKKLTGSRKRKEAKIAADVSGSSFKVDTKDNRFQAVLDGSDARFGIDKTDPSFKDTSAMREIISEQNMRRKNKR 729
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BLAST of mRNA_L-elsbetiae_contig11729.1505.1 vs. uniprot
Match: S7S439_GLOTA (NUC153 domain-containing protein n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7S439_GLOTA)

HSP 1 Score: 54.3 bits (129), Expect = 1.380e-5
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:   22 RDYNMHRLAREERLRGKKXXXXXXXXETEREKAPGQDFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILEERSRRK 270
            R ++M  + + E+ RGKK        + E E    +DF++DV DERFAA+ E D  F ID ++  FK T+ M ++LEERS+RK
Sbjct:  545 RHFDMKAVVKSEKARGKKRRSKKNPLD-EGENETQEDFKIDVQDERFAALHE-DYNFAIDPSNPRFKKTKSMSALLEERSKRK 625
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BLAST of mRNA_L-elsbetiae_contig11729.1505.1 vs. uniprot
Match: A0A0F4YFT1_TALEM (Pre-rRNA processing protein Esf1 n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4YFT1_TALEM)

HSP 1 Score: 53.5 bits (127), Expect = 2.570e-5
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  112 EKAPGQDFRVDVADERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILEERSRRK 270
            EKAPG DF +DV D RFA++ E    F ID T+  FKDT GMR++LEE  +R+
Sbjct:  626 EKAPGDDFEIDVNDPRFASLYENH-EFAIDPTNPRFKDTAGMRALLEEGRKRR 677
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11729.1505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LFV7_ECTSI1.320e-4081.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1FMP2_9STRA4.310e-1460.22Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A1Z5KDP7_FISSO2.510e-1353.76Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A4D9D496_9STRA2.530e-1358.43Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
I2CPY8_NANGC2.600e-1357.30NUC153 domain-containing protein (Fragment) n=1 Ta... [more]
A0A835YR83_9STRA5.840e-1056.45Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
B7GAK3_PHATC2.560e-949.44Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1E7F590_9STRA6.540e-944.68NUC153 domain-containing protein n=1 Tax=Fragilari... [more]
S7S439_GLOTA1.380e-542.17NUC153 domain-containing protein n=1 Tax=Gloeophyl... [more]
A0A0F4YFT1_TALEM2.570e-554.72Pre-rRNA processing protein Esf1 n=1 Tax=Rasamsoni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11729contigL-elsbetiae_contig11729:108..1829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue3.9e-36
Seed eggNOG ortholog2880.D8LFV7
Preferred nameESF1
KEGG koko:K22197
KEGG Pathwayko05225,map05225
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.rRNA processing
EggNOG OGsCOG5638@1,KOG2318@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size475
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.442791-CDS-L-elsbetiae_contig11729:107..3291622815376.442791-CDS-L-elsbetiae_contig11729:107..329Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11729 108..329 +
1691682868.0449383-CDS-L-elsbetiae_contig11729:107..3291691682868.0449383-CDS-L-elsbetiae_contig11729:107..329Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11729 108..329 +
1622815376.4520502-CDS-L-elsbetiae_contig11729:1576..18281622815376.4520502-CDS-L-elsbetiae_contig11729:1576..1828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11729 1577..1828 +
1691682868.058257-CDS-L-elsbetiae_contig11729:1576..18281691682868.058257-CDS-L-elsbetiae_contig11729:1576..1828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11729 1577..1828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11729.1505.1prot_L-elsbetiae_contig11729.1505.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11729 108..1828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11729.1505.1

>prot_L-elsbetiae_contig11729.1505.1 ID=prot_L-elsbetiae_contig11729.1505.1|Name=mRNA_L-elsbetiae_contig11729.1505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
QEDEEDRRDYNMHRLAREERLRGKKLRGKRKRKETEREKAPGQDFRVDVA
DERFAAVLEGDTRFGIDRTDSSFKDTEGMRSILEERSRRKDKKGHGGRRS
NSNNSLAGDANGSAHGGSSGASTGINAGGGGGGADGRKKGDLSLLVNKLK
TRGLARNG
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mRNA from alignment at L-elsbetiae_contig11729:108..1829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11729.1505.1 ID=mRNA_L-elsbetiae_contig11729.1505.1|Name=mRNA_L-elsbetiae_contig11729.1505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1722bp|location=Sequence derived from alignment at L-elsbetiae_contig11729:108..1829+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGGACGAGGAGGACAGGCGGGACTACAACATGCACCGGCTGGCGCG
CGAGGAGAGGCTCAGGGGCAAGAAACTGAGGGGCAAGCGGAAGCGGAAGG
AGACGGAGAGGGAGAAAGCCCCCGGTCAGGACTTCAGGGTCGACGTGGCC
GACGAGCGGTTCGCGGCGGTTCTCGAGGGGGACACCCGGTTCGGAATCGA
CCGCACGGACTCGAGCTTCAAGGTGATTAATAAATTGATTGGTTGATTGA
TTGATTGATTGATTGATTGATGCAGGGGGTCCTCGTTTTCGTGGGTATGG
GGGGCGGGGGGGGGTGGTCCTAGAAAGGTATTTCTACCGCGCCCTGTAGG
CTACAGGCTGGTTGCGTGGGGGGGGTGCATGCAAGGTGTGGGGTGCCTTT
TGGTGCGTTGTTGAACCACACGCTGGTTCTGTCTTATCACCAAGCACCGC
AGACGGGGGGAGTGGGGGCCTTGGGGAAAGGCACCCTTCTGTGTGACACC
ACGGTTCAGTACTCTGGCAAGATGCCCTCGTGGCATGGAGCGCCCATCGA
GCACTGGAAATAAATGTGAAGAAGAAAAACAATGTGAGAACAAAAGCGTC
CCACCGCTGGTGTTGGTTTTGTCATCGTTCCGAAAGGAGCCCATGCGTGC
GTGGCACAGGGAGCAGTCGAACCAAACCTTTCCGGATTGGATCCTTGCGA
AGATTGTTGGTCCATATGTTTCAGAATGGCTGCCGAGAAAAACATGGAAC
AATTTAGCCGCACGGGCGGGCTCCTTCACTACCCTGTACGACACAAGATA
ACACACACCCTGGGCCGATTTTCAAAGCTCGGTTACTCCGCAAAGACTAT
GTACAGTATGATTATAATACCAATTGACAAGTTTTCGGACAGCTCTTGAT
GAAATCTTTTTCCAACGCCACCCTTTTCGGGGCTGGAGCTCTTTTTTTTT
TTTTCGGAGCTAAAGCTCTTCTCGCTGTCGAGCACTCGAGCATTGAAAAT
CGATCCAGGGGGGTGTGTTATCTTGTGTCGTATAGTCTACGGTAGTGCCT
CGATAGATGGTATATACTGCTGAGACTTCACGCGGTTCGTGCTTCCTCTG
CGCATCGGCCAGGCGTGTTCTACGGTAGCCAGTTAGTTCGTCGCACAGGT
GGACAGCAGTTGGAGGTTGTTTGACTCCACATCGTGCCATGCGCGCGGTG
TGTATATACGTAGAACATGCCAGAATCTTGTACGAACAACATTTCAGCAA
GCAACAGAAAATACTACCACCTGCTCTCCTCTATTTCGGCACTTCTCCAT
CTCCATCTCTCTCGCTGCCTCTCTCTCTCTCTCTTTGTTTCCGTCTTGTT
TGCCTGACCCTGTCTCACTCATGTTATGCTTCTGATGTCTACTTCTGTCT
CCTCTTATTTCCCTTGGATGTGTGCACCTCTCTCTCTCTCTCTCTCTCCT
ACGACTCTTGTCTCTTCAGGACACCGAGGGGATGCGCTCCATCCTGGAAG
AACGCTCGCGCCGGAAGGACAAGAAGGGGCACGGCGGCCGCCGCAGCAAC
AGCAACAACAGTCTCGCCGGGGACGCCAACGGCTCCGCTCACGGCGGCAG
CAGCGGTGCTAGCACCGGGATCAACGCCGGCGGTGGCGGTGGCGGGGCAG
ACGGTCGAAAGAAGGGCGACCTCTCGCTGCTCGTCAACAAGCTCAAAACG
AGAGGTCTCGCCAGAAACGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11729:108..1829+

>mRNA_L-elsbetiae_contig11729.1505.1 ID=mRNA_L-elsbetiae_contig11729.1505.1|Name=mRNA_L-elsbetiae_contig11729.1505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig11729:108..1829+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGGACGAGGAGGACAGGCGGGACTACAACATGCACCGGCTGGCGCG
CGAGGAGAGGCTCAGGGGCAAGAAACTGAGGGGCAAGCGGAAGCGGAAGG
AGACGGAGAGGGAGAAAGCCCCCGGTCAGGACTTCAGGGTCGACGTGGCC
GACGAGCGGTTCGCGGCGGTTCTCGAGGGGGACACCCGGTTCGGAATCGA
CCGCACGGACTCGAGCTTCAAGCAGGAGGACGAGGAGGACAGGCGGGACT
ACAACATGCACCGGCTGGCGCGCGAGGAGAGGCTCAGGGGCAAGAAACTG
AGGGGCAAGCGGAAGCGGAAGGAGACGGAGAGGGAGAAAGCCCCCGGTCA
GGACTTCAGGGTCGACGTGGCCGACGAGCGGTTCGCGGCGGTTCTCGAGG
GGGACACCCGGTTCGGAATCGACCGCACGGACTCGAGCTTCAAGGACACC
GAGGGGATGCGCTCCATCCTGGAAGAACGCTCGCGCCGGAAGGACAAGAA
GGGGCACGGCGGCCGCCGCAGCAACAGCAACAACAGTCTCGCCGGGGACG
CCAACGGCTCCGCTCACGGCGGCAGCAGCGGTGCTAGCACCGGGATCAAC
GCCGGCGGTGGCGGTGGCGGGGCAGACGGTCGAAAGAAGGGCGACCTCTC
GCTGCTCGTCAACAAGCTCAAAACGAGAGGTCTCGCCAGAAACGGGGACA
CCGAGGGGATGCGCTCCATCCTGGAAGAACGCTCGCGCCGGAAGGACAAG
AAGGGGCACGGCGGCCGCCGCAGCAACAGCAACAACAGTCTCGCCGGGGA
CGCCAACGGCTCCGCTCACGGCGGCAGCAGCGGTGCTAGCACCGGGATCA
ACGCCGGCGGTGGCGGTGGCGGGGCAGACGGTCGAAAGAAGGGCGACCTC
TCGCTGCTCGTCAACAAGCTCAAAACGAGAGGTCTCGCCAGAAACGGG
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